CombineArchiveWeb -- web based tool to handle files associated with modelling results. -- DEMO at...
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SYSTEMS BIOLOGY BIOINFORMATICS ROSTOCK SE S simulation experiment management system CombineArchiveWeb web based tool to handle files associated with modelling results. MARTIN SCHARM ,FLORIAN WENDLAND,MARTIN PETERS, MARKUS WOLFIEN,TOM T HEILE,DAGMAR WALTEMATH Department of Systems Biology & Bioinformatics, University of Rostock http://sems.uni-rostock.de SWAT4LS, Berlin 2014 December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 1
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Transcript of CombineArchiveWeb -- web based tool to handle files associated with modelling results. -- DEMO at...
SYSTEMS BIOLOGY
BIOINFORMATICS
ROSTOCKS E Ssimulation experiment management system
CombineArchiveWebweb based tool to handle files associatedwith modelling results.
MARTIN SCHARM, FLORIAN WENDLAND, MARTIN PETERS,MARKUS WOLFIEN, TOM THEILE, DAGMAR WALTEMATHDepartment of Systems Biology & Bioinformatics, University of Rostock
http://sems.uni-rostock.de
SWAT4LS, Berlin 2014December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 1
How do you share your data?
science sucks - stern i4ever
science sucks - stern i4ever
science sucks - stern i4ever
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 2
The COMBINE Archiveone file to share them all
TM
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 3
The COMBINE Archiveone file to share them all
• OMEX: Open Modelling EXchange Format
• Contents:
• manifest.xml – information about files and their formats
• Meta data files – clerical information
• The files – necessary to reproduce a modelling result
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 4
CATThe CombineArchive Toolkit
Martin Scharm
Florian Wendland
Martin Peters
Dagmar Waltemath
Tom Theile
Markus Wolfien
Website: sems.uni-rostock.de/cat
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 5
CATThe CombineArchive Toolkit
DEMO.http://cat.sems.uni-rostock.de
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 6
CATThe CombineArchive Toolkit
Desktop WebApplication Interface
CombineArchive Library
CombineArchive Toolkit
create
science sucks - stern i4ever
modifyBioModelsDatabase
explore
CellML ModelRepository
share
science sucks - stern i4ever
science sucks - stern i4ever
science sucks - stern i4ever
science sucks - stern i4ever
Martin Scharm
Florian Wendland
Martin Peters
Dagmar Waltemath
Tom Theile
Markus Wolfienpeerj.com/preprints/514
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 7
SYSTEMS BIOLOGY
BIOINFORMATICS
ROSTOCKS E Ssimulation experiment management system
Thank you for your attention!
SEMS group
Dagmar WaltemathMartin PetersMarkus WolfienVivek GargSrijana KayasthaOlaf Wolkenhauer
@SemsProject
http://sems.uni-rostock.de
December 10, 2014 CombineArchive Toolkit | Martin Scharm, Florian Wendland, Martin Peters, Markus Wolfien, Tom Theile, Dagmar Waltemath 8
