CHI Lab Overviedavidc/pubs/mt2016_dac.pdf · Computational Health Informatics (CHI) Laboratory...
Transcript of CHI Lab Overviedavidc/pubs/mt2016_dac.pdf · Computational Health Informatics (CHI) Laboratory...
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Prof. David A. Clifton
Associate Professor of Engineering Science
Computational Health Informatics (CHI) Laboratory
Governing Body Fellow – Balliol College
CHI Lab Overview
Michaelmas 2016
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CALMS-2
Main study paper has been submitted to CCMed;
other related papers are in preparation
CALMS-3
Study paper is in preparation
CALMS-4
Currently specified as (i) examination of
clinical pathways for responding to deteriorating
patients, (ii) ambulatory monitoring of a subset
of patients with adverse outcomes
+1 PDRA @ IBME for system development
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PICRAM (to November, 2016)
Main paper paused, waiting for patent filing
Anonymised database within Physionet(in discussion with Roger Mark)
HAVEN
Systematic reviews + protocol to be published
UAE Rhodes scholar – Farah Shamout
+1 PDRA @ KC/IBME, 3 yrs [currently advertised]
Deep Learning (MP research)
Exploratory analysis of ECG + activity
TensorFlow, Theano via Amazon
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Gates Foundation (to September, 2017)
Acquisition of M. tuberculosis genomic data
Collaboration with CDCs from UK, USA, China, India
“100,000 TB genomes” project,
supported by Genomics England
IBME PDRA: Dr. Yang Yang (Shanghai Jiaotong)
Wellcome Trust (to September, 2020)
Machine learning methodology for handling hierarchical trees of
genomics data, predicting risk of antibiotic resistance
Students to be co-supervised with Danny Wilson (NDM)
+1 PDRA @ IBME, 4 yrs [to be advertised]
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EPSRC HTCA (to September, 2021)
Fundamental ML for modelling time-series EHR data
Rhodes scholar: Drew Birrenkott (Trinity College)
Clarendon scholar: Glen Wright Colopy (St. Cross College)
EPSRC DTA: Sarah-Jane Rodgers (Balliol Lubbock Scholar)
+1 PDRA @ IBME, data analysis – fundamental methodology [to be advertised]
+1 PDRA @ IBME, data analysis – MIT eICU
with Prof. Roger Mark and Dr. Li-wei Lehman
[to be advertised]
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Intelligent Sensors (to September, 2019)
Pushing algorithms into sensors: wristworn + earables
+1 PDRA @ IBME, machine learning, 3 yrs – Delaram Jarchi[recruited]
+1 PDRA @ IBME, signal processing, 2 yrs – Fernando Andreotti[recruited, Maarten de Vos’ group]
+1 PDRA @ IBME, systems integration, 2 yrs – TBC[to be re-advertised, Lionel Tarassenko’s group]
EPSRC NetworksPlus “FAST” (to September, 2020)
No recruitment at Oxford, networking + research budget
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NERC, UNICEF (to September, 2018)
Fusing water and health data in Kenya
Handpumps + local health network data
LSI DTC: Farah Colchester (University College)
IBME PDRA: Dr. Stijn Luca (0.5 FTE, at KU Leuven)
DfID (to September, 2022)
Risk stratification for water & poverty in Bangladesh
Rhodes / UNICEF scholar: Heloise Greeff (Balliol College)
IBME PDRA: Dr. Achut Manandhar (Duke)
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Dialysis (to September, 2020)
NIHR + EPSRC match-funded
Fundamental ML for multivariate time-series
IBME PDRA: Dr. Tingting Zhu
China Kadoorie Biobank (to September, 2018)
0.5 million participants, various ECG + EHRs
China Research Council: Yanting Shen (Trinity)
Immune Disease (to October, 2016)
“Oxford IBD Cohort”: rich EHR + genomic datasets
Rhodes scholar: Kate Niehaus (Trinity)
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COPD (to September, 2017)
Analysis of EDGE data
EPSRC DTA: Peter Gyring
ASPIRE (to 2020)
Intelligent sensors in the home,
for COPD patients
+1 PDRA @ IBME, machine learning, 3 yrs
+1 PDRA @ IBME, signal processing, 3 yrs
+1 PDRA @ IBME, systems integration, 3 yrs