Bioinformatics Applications & Analysis using PoPLAR Gateway · 2013-08-22 · 7/29/13, 16:03 Create...

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Nyalia Lui, Yuan Liu, and Bhanu Rekepalli PhD Bioinformatics Applications & Analysis using PoPLAR Gateway

Transcript of Bioinformatics Applications & Analysis using PoPLAR Gateway · 2013-08-22 · 7/29/13, 16:03 Create...

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Nyalia Lui, Yuan Liu,

and Bhanu Rekepalli PhD

Bioinformatics Applications &

Analysis using PoPLAR Gateway

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Bioinformatics

Focus

Genomic Sequencing

DNA/RNA Strands

Protein Sequences

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Problems

Unorganized Data

Abundance of Data

Data Growth

Knowledge Discovery

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Explored Aspects of Bioinformatics

Genome Assembly

Sequence Analysis

Structures

Drug Discovery

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Applications

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• What are we

comparing?

BLAST vs

MUMMER

• What is coverage?

• BLAST vs MUMMER

• Contigs vs Nodes

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Our

Focus

Develop Resources

Analytical Tools

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PoPLAR Science Gateway

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The life of a running task

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Research Use

Provide easier access to

command line tools through

PoPLAR Gateway.

Educate Biologists on

accessing HPC

resources for large scale

data analysis.

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Future Work

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Thank

You

• Questions?

Acknowledgements


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