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Bioenergetics and Biochemical Reaction Types
Photosynthetic autotrophs Heterotrophs
bioenergeticsbioenergetics is the study of the balance between energy intake in the form of food and energy utilization by is the study of the balance between energy intake in the form of food and energy utilization by organisms for life-sustaining processes- tissue synthesis, osmoregulation, digestion, respiration, reproduction, organisms for life-sustaining processes- tissue synthesis, osmoregulation, digestion, respiration, reproduction, locomotion, etc.locomotion, etc.
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Autotrophs
Use CO2 as sole carbon source
Photoautotrophs: Energy from sunlight (photosynthesis)
Chemoautotrophs: Energy from oxidation of inorganic compounds e.g.,Fe ++-----> Fe+++
Heterotrophs: Use combined forms of carbon (sugars) for energy
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Energy
The measurement of energy requires converting it from one form to anotherThe measurement of energy requires converting it from one form to another
The basic unit of energy is the calorieThe basic unit of energy is the calorie
international unit: the joule - 1.0 joule = 0.239 calories or 1 calorie = 4.184 jouleinternational unit: the joule - 1.0 joule = 0.239 calories or 1 calorie = 4.184 jouleEnergy content of a substanceEnergy content of a substance
Gross energy represents the energy present in dry matter (DM)-Gross energy represents the energy present in dry matter (DM)-
Laws of Thermodynamics1. Conservation of energy. Energy may change form or be transported but cannot be
created or destroyed.2. Entropy. In all natural processes, the entropy of the universe increases.
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Animals are not engines and can’t use heat to perform work Animals are not engines and can’t use heat to perform work
Cells are isothermal (Const temp and pressure)Cells are isothermal (Const temp and pressure)
Cells obtain their energy from chemical bonds, Cells obtain their energy from chemical bonds,
Free energy G- amt of energy capable of work at const temp and pressureFree energy G- amt of energy capable of work at const temp and pressure
Enthalpy H-Heat content of the system.
Entropy S- expression of randomness in the system-
G=H-TS G’o = -RTlnK’eq (Std free energy change of a reaction) (pH7, 25C, 1M reactant/product, 1Atm)
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Std versus actual
Std free energy change G’o tells us direction of a reaction and how far it will go to reach equilibrium WHEN Initial conc of reactant and product is 1M, pH is 7, temp is 25C, pressure is 1Atm.
G’o is a constant for that reaction
ACTUAL CHANGE
A+B <-----> C+D
G = G’o + RTln [C][D][A][B]
A---->B G’o = +13.8 kJ/molB---->C G’o =-30.5 kJ/molA---->C
Sum= -16.7 kJ/mol (reaction is spontaneous because the two are coupled)
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Keq and Go
ATP+H2O---->ADP+ Pi -7.3Kcal/molATP+H2O---->AMP+PPi -10.9Kcal/molPPi+H2O---->2Pi -4.6Kcal/mol
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ReviewEnergy transduction in cells are via chemical reactions- bond formation/breakage
Covalent bonds share electronsHomolytic cleavage- each atom leaves the bond with on electronHeterolytic cleavage-one atom retains both electrons
Nucleophiles-groups rich in and capable of donating electron (attracted to nucleus)Electrophile- group deficient in electron (attracted to electron)
Non-bonded electrons (dots) are moved in direction of arrows
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Carbonyl
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Chemical reaction that occur during metabolism
Carbonyl bonds play a key role in C-C bond formation and breakage
Rearrangements in electrons
Grp transfer- transfer of acyl/phosphoryl from one nucleophile to another
Biological oxidation (loss of electron)-Oxidation releases energy.
Every oxidation is accompanied by a reduction (electron acceptor acquires electrons removed by oxidation).
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Metabolism= Catabolism and Anabolism
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Converge and Diverge
Catabolism• Generate ATP
• Generate building blocks forbiosynthesis Anabolism
• Utilize energy
• Generate biomolecules
Different enzymes mediate catabolic and anabolic pathways.Catabolic and anabolic pathways employ different enzymes which are regulated separatelySome key steps in each pathway are unidirectional
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Themes
Allosteric regulation- metabolic intermediate (ATP)
Synthesis/degradation of enzyme Control enzyme levels
Covalent Modification of enzyme- Phosphorylation (integrated via growth factors/hormones)
Compartmentalization•One way to allow reciprocal regulation of catabolic and anabolic processes•Cytosol Vs mitochondria
Specialization of organs• Regulation in higher eukaryotes• Organs have different metabolic roles
Liver = gluconeogenesis (glucose)Muscle = glycolysis
Availability of substrate-(intracellular conc of substrate is often below Km of enzyme- rate is proportional to substrate conc)
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Glucose
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Glucose
Glycolysis(every cell)
Pyruvate
Hexose shunt(every cell)
NADPH
AcetylCoA
Fatty acids(liver, adipose)
Glycogen(liver muscle)Amino acids
(Liver)
Gluconeogenesis(every cell)
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ATP ATP ATP
Heterotrophic cells obtain free energy from catabolism of nutrients forming ATP
Hydrolysis of ATP has a high negative DG- -30.5kJ/mol. This means that ATP has a strong tendency to transfer terminal phosphate to water.
ATP hydrolysis in water only produces heat
In cells ATP hydrolysis involves covalent participation of ATP. ATP provides energy by grp transfer (Substrate Level Phosphorylation).
ATP hydrolysis is exogermic (negative G). This is coupled with endogermic (positive G) reactions in cells allowing these reactions to proceed.
Some processes do involve direct ATP hydrolysis providing energy that changes protein conformation producing mechanical motion
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High energy bond
Why is ATP PO4 bond high energy bond? It is not breaking of bond - it is difference in free energy between reactant and product.
ATP + H2O <-------> ADP + Pi DGo’ = -30.5 kJ/mol
Why does ATP have strong tendency to transfer its terminal phosphate?
Electrostatic repulsion
Resonance stabilization-
Hydration-
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Oxidation and Reduction
Oxidation - loss of electronsReduction - gain of electrons
Electrons can be transferred from one mol to anotherdirectly as an electron (one electron)as hydrogen atoms (one proton + one electron) as hydride ion (:H-) (two electron) (NAD)
direct combination with oxygen
In aerobic organismsOxidation of carbon (loss of electrons from carbon) is used to generate ATPThe final acceptor of electrons is oxygen producing CO2
ReducedHigh energy
OxidizedLow energy
Fatty acids are more energy rich compared to glucose because carbon in fatty acids is more reduced
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Oxidation
Biological Oxidation Involves loss of electrons from carbon
In cells Carbon (or another atom like nitrogen) exists in a range of oxidation states because:Carbon shares electrons with another atom (Oxygen, nitrogen, sulphur, hydrogen)The more electronegative atom “OWNS” the bonded electrons it shares
C ON
C
H
C
C
C
In the C-O bond, the C has partially lost the electron and has undergone oxidationIn the C-N bond, the C has partially lost the electron and has also undergone oxidation even when no oxygen is involved!Electron is not Fully transferred
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Conjugate redox pairs
AH2 <--------> A + 2e- + 2H+ (redox pair)
B+2e- + 2H+ <-----> BH2 (redox pair)
Two conjugate redox pairs together in soln- electron transfer from electron donor of one pair to electron acceptor of another pair
AH2 + B <-----> A + BH2
AH2 + NAD+ -----> A + NADH + H+
Electron donating mol is called reducing agentElectron accepting mol is called oxidising agent
(In a buffer you have proton donor <---------> proton acceptor+ H+)
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Overview
Glucose Glycolysis AcetylCoA Krebs cycleElectronTransportchain
CytosolMitochondria
ATP NADHFADH ATP
H2O
CO2 O2
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Glycolysis and Anaerobic respiration
Glucose
2 Pyruvate
2ATP
2ADP
2NAD
2NADH
4ADP
4ATP
Acetaldehyde
Ethanol
Lactate
Muscle
Yeast
Krebs
CO2
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Krebs cycle
Pyruvate
AcetylCoA
3NAD
ADP
3NADH
FADFADH2
ATP3 CO2
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