Enabling semantic search in a bio-specimen repository - ICBO 2013
Bio Storage Labs & Repository Overview
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Transcript of Bio Storage Labs & Repository Overview
BioStorage Laboratory Services
and
BioStorage Repository
Protecting Your Valuable Research
MD Route 43 at Crossroads Circle –
Just two miles east of I-95
Comprehensive Security for Primary and
Backup Facilities
•Campuses under overnight police and video surveillance with adequate exterior lighting
•External doors locked; Front door kept open only when main entry area is occupied
•Live-monitored ADT alarm system with keypad code activation & deactivation
•External door sensors and internal motion, heat & smoke detectors
•CMS-monitored facility environmental conditions
•Campuses under overnight police and video surveillance with adequate exterior lighting
•External doors locked; Front door kept open only when main entry area is occupied
•Live-monitored ADT alarm system with keypad code activation & deactivation
•External door sensors and internal motion, heat & smoke detectors
•CMS-monitored facility environmental conditions
Facilities & Infrastructure
•Freezers have individual locks with dedicated internal alarm sensors
•Authorized clients are escorted through storage warehouse and have access restricted to their own samples
•Reserve UPS power, CO2 & liquid N2, and freezer units available at all times
•Freezers have individual locks with dedicated internal alarm sensors
•Authorized clients are escorted through storage warehouse and have access restricted to their own samples
•Reserve UPS power, CO2 & liquid N2, and freezer units available at all times
Equipment
•Spyware/Viral internet & intranet security and update patches
•Computer terminals and servers are ID/password controlled
•Client database login/password changed every 60 days
•Confidentiality, protection, and handling of client data & information maintained according to Federal guidance
•Databases & files regularly backed up to on-site and off-site servers
•Spyware/Viral internet & intranet security and update patches
•Computer terminals and servers are ID/password controlled
•Client database login/password changed every 60 days
•Confidentiality, protection, and handling of client data & information maintained according to Federal guidance
•Databases & files regularly backed up to on-site and off-site servers
IT & Records
Bioprocessing Laboratory with
Class II Biosafety Cabinet
SAMPLE RECEIPT PROCESSING DISTRIBUTION STORAGE
Process Workflow
RECEIPT Examine incoming
samples/packaging
Review paperwork
Scan papers for vital
records
INVENTORY Upload data sheet or
enter sample data into
FreezerPro database
Generate Barcode if
needed
Identify priority (pre-
frozen) samples for
immediate freezer
storage
NO
YES Priority (Prefrozen)
Sample?
Immediate
transfer to
Storage
TESTING & ANALYSIS
Outsourced to University of MD at
Baltimore Translational Research
Lab
Proliferation & cytotoxicity assays
PD & PK analysis
Genotyping
Performed at BioStorage
Laboratory Services
Mycoplasma, Entotoxin, & Sterility
testing
LAB PROCESSING Isolation / Sample aliquoting
Client or BSL-generated SOPs (if
applicable)
Cell culturing & banking
Production of proteins
FREEZER
STORAGE (Client-specified or
BioStorage-
recommended
environment)
Daily CMS
monitoring of
temperature &
freezer status
Regular freezer &
equipment
maintenance
FreezerPro
Database alerts
for low inventory
SHIPPING Obtain packaging &
shipping supplies
Ship specimens packed in
dry ice unless otherwise
requested
Maintain compliance with
DOT & IOTA regulations
REQUEST Receive written request
from Project Manager, PI
or Designee (with written
authorization)
RETREIVAL Maintain sample integrity
throughout retrieval
process
Update database &
inventory
Quality Assurance & Controls
Inventory •Specimen tracking
•Zebra barcode labeling
•Primary & backup database files
Specimen &
Laboratory
Processing
•ISO 9001 & ISO 17025 compliant
•Mycoplasma / contamination testing
•ISBER & NCI Biorepository best
practices
•Aseptic & Sterile Techniques
•Follow DOT, IOTA, & other Federal
shipping regulations
IT &
Information
•User access-controlled servers &
databases
•Primary & backup database files
•Vital records stored by hard copy and
electronically
Facilities &
Equipment
•Continuous freezer monitoring &
maintenance
•24/7 Central Monitoring System (CMS)
HVAC / Environmental Tracking
•Documentation & status tracking
•Automatic phone notification
•Regular equipment calibration
Processes
&
Operations
Quality
Management
Program
SOPs &
Policies
Quality Management Program
•Equipment and/or
facility testing
•Sample Integrity
•Disaster Recovery
& Continuity Plan
Response
•Memoranda of
Understanding
(MOUs) with Key
Partners
•BioStorage
Reorganization
Implement
and monitor
corrective
actions
BioStorage
Executive
Team
QM Planning Team
Identify Lessons Learned
Identify Deficiencies
Identify Needed Resources
Identify Major Updates
Quality
Manager
Approve
corrective
actions
Incorporate changes into revised SOPs,
Policies, and MOUs
Corrective action plan with recommendations for
implementation
Repository Warehouse has
over 1950 square feet of floor space
Storage and maintenance of
BioStorage-owned and
Client-owned Freezers
Storage Capabilities:
Ambient, +4, -20, -80, & -196 degrees
Celcius
Facility and Equipment have 24-Hour
Monitored Security and Alarm Systems
-80 degree Freezers have CO2 backup
capability
Stand-by -80 degree Freezers available
for emergencies
+4 and -20 degree Celsius
Walk-in Cold Rooms
FreezerPro Biospecimen Inventory
Tracking System
• Easily import sample data spreadsheets
• Quickly change location of individual or boxed specimens
Data Importing
• Search by field or keyword
• Graphic display of sample location
• Live querying & “Smart Folders”
Searching
• Maintains live audit trails
• Role-based, multi-layered access to audit reports
Administration & Auditing
• Incorporates barcode labeling, scanning, & verification
• Compatible with Zebra barcoding system
Sample Identification
• Conforms to FDA’s CFR Part 11 regulations for electronic documentation and electronic signatures
Regulatory Compliance
Shipping and Receiving Area
Rear 9’ X 10’ Exterior Loading Dock
Capacity for Large-Scale Delivery and
24-Hour Reserve Power
EVENT NOTIFICATION ACTIVATION RECONSTITUTION OPERATIONS
Business Continuity Program Aligns with
Federal Guidance
SURVEILLANCE
• Communications
• Human Capital
• Specimen inventory
• Database/file integrity
• Contamination
• Equipment status
• Primary & backup
resources
• Capability to implement
continuity plan
• All-Hazards event
planning
FUNCTIONALLY-
RELATED • Delegation of Authority
• Crisis communications
(internal & external)
• IT / Disaster Recovery
• Specimen Recovery
• Database & Vital Records
• Documentation & Lessons
Learned
HUMAN CAPITAL-
RELATED • Order of Succession
• Critical Hiring & other HR
Flexibilities
• Telework
• Social Distancing Incident
impacts BioStorage
operations?
INCIDENT
DEPLOY Specimens & equipment
to backup unit or facility
and/or
TRANSFER Functions to telework or
distant sites
FACILITY-RELATED • Security / Access control
• HVAC / Utility maintenance
• Equipment maintenance &
repair
• Decontamination/
Housekeeping
KEY FUNCTIONS Impact to BioStorage
resolved
Facility, equipment, IT,
and Human Capital able
to support full
operations
RETURN TO
NORMAL
OPERATIONS Return functions &
operations to primary site
Document incident and
response
Review lessons learned
Implement Correction
Plan
Monitor &
re-evaluate impact
NO
YES
Backup Facility – Arbutus, MD
10,000-Gallon Liquid Nitrogen Reserve
Backup Facility Warehouse has
over 2000 square feet of floor space
Backup Facility has standby
-80 and Liquid Nitrogen Freezers
“All-Hazards” Disaster Plan Aligns with
Federal Guidance
Human- or Infrastructure-Related
Earthquake
Flood
Severe Weather
Hurricane
Winter Weather
Tornado
Natural
Key Disaster Scenario:
Freezer Malfunction or Breakdown
SensaPhone Report:
FREEZER
MALFUNCTION
DETECTED
YES
Impact Assessment:
Will malfunction affect
samples?
NO
Monitor
situation
ACTIVATE
CONTINGENCY PLAN For affected samples
Incident Report to
Client:
SAMPLES
SUCCESSFULLY
PRESERVED Disposition details
attached
TRANSFER
SAMPLES Preserve & relocate samples:
Control spread of impact to
unaffected samples
Isolate affected samples
Relocate affected samples to
backup freezer shelf or unit
Create temporary relocation
file in FreezerPro
PERSONNEL Prepared to respond:
Primary—initial response
within 30 minutes
Alternates—two methods to
contact
EQUIPMENT Backup freezer space:
All units—at least 1 shelf
empty
Reserve units—stand-by to
fully activate
RESOLVE DAMAGE Initiate repairs & plan for
return to permanent storage:
Assess cause of problem
Repair or replace freezer
Prepare & implement plan for
restoration of samples
Plan to mitigate future
problems of similar nature
Generate incident report
Preparation
Decision-Making & Communication
Emergency Operations
LABORATORY SERVICES Tanya Y. Ray, MM – President
Tel: 410-247-2500, x203
Email: [email protected]
REPOSITORY SERVICES Richard A. Blood – Vice President
Tel: 410-247-2500, x202
Email: [email protected]