Barcelona 2014: CrossRef Tools for Small Publishers by Geoffrey Bilder

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Georey Bilder Director of Strategic Initiatives Barcelona, 2014 CrossRef Helps Small Publishers

Transcript of Barcelona 2014: CrossRef Tools for Small Publishers by Geoffrey Bilder

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Geoffrey Bilder Director of Strategic Initiatives

Barcelona, 2014

CrossRef Helps Small Publishers

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Who am I?

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Let’s play a game...

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Part II

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BrandIs it relevant? Is it good? Is it important?

provenance infrastructure

•What is it?

•Where can I get it?

•What refers to it?

•What does it refer to?

•What has been done to it?

•Who provides stewardship of it?

•Who funded it?

•What can I do with it?

•Who do we credit it to?

•What are their credentials?

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CrossRef DOIs

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http://www.easel.com/foo/bar/blat.html

Tim Berners-Lee (1998). "Cool URIs Don’t Change"

Litigation Transfer Poverty Forgetfulness

Divorce Death...

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List of university and college mergers in theUnited StatesFrom Wikipedia, the free encyclopedia

This is a list of mergers of universities and/or colleges in the United States with the name of thesurviving institution, predecessors, and effective date.

This list is incomplete; you can help by expanding it (http://en.wikipedia.org/w/index.php?title=List_of_university_and_college_mergers_in_the_United_States&action=edit) .

Contents1 A through D2 E through M3 N through Z4 See also5 References

A through DAlliant International University - merger of California School of Professional Psychology andUnited States International University, 2001Azusa Pacific College - absorbed Arlington College, 1968Azusa Pacific College - merger of Azusa College and Los Angeles Pacific College, 1965University of Baltimore - absorbed Eastern College, 1970Benedictine College - merger of Mount Saint Scholastica College and St. Benedict's College -1971Boston University School of Medicine - absorbed Boston Female Medical School, 1874Brevard College - merger of Brevard Institute, Weaverville College, and Rutherford College,1934University of California, Berkeley - merger of the College of California and the Agricultural,Mining, and Mechanical Arts College, 1853Carson-Newman College - merger of Carson College and Newman College for Women, 1889Case Western Reserve University - merger of Case Tech and Western Reserve, 1971-72The Catholic University of America - absorbed Columbus University, 1954Central Nazarene College - absorbed Nazarene Bible Institute (1911)Chicago College of Performing Arts - absorbed Roosevelt University School of Music, 1954University of Cincinnati - absorbed Medical College of Ohio 1896; Cincinnati College ofPharmacy, 1954Clark Atlanta University - merger of Clark College and Atlanta University, 1988Davenport University - merger of Davenport College, Detroit College of Business, and GreatLakes College, 2000.University of Delaware - merger of Newark College and Women's College of Delaware, 1921DePaul University - absorbed Barat College, 2001

List of university and college name changes inthe United StatesFrom Wikipedia, the free encyclopedia

Here follows a list of renamings of universities and colleges in the United States.

Contents: A B C D E F G H I J K L M N O P Q R S T U V W X Y ZTop of Page — See also

Current Name FormerName(s) Year of Change

Alabama Agricultural andMechanical University

Agricultural andMechanicalCollege ofAlabama

Alcorn State UniversityAlcornAgricultural andMechanicalCollege

1974

Amridge UniversitySouthernChristianUniversity

Alliant International University CaliforniaWestern

Appalachian State University

Appalachian StateTeachers College;AppalachianTraining Schoolfor Teachers;Appalachian StateNormal School;WataugaAcademy

1967 [1]

Apollo CollegeAmericanInstitute ofHealthTechnology

2005 [2]

Arcadia University Beaver College 2001

Arizona State University Tempe NormalSchool 1958

University of North Texas Libraries

CyberCemetery Home

Search the CyberCemetery

Browse the CyberCemetery

Related Resources

Contact Us

Digital Collections Home

Browse the CyberCemetery: Agencies by DateExpired

2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 |1998 | 1997 | 1996 | 1995

2009

National Prison Rape Elimination Commission (August 2009)

2008

Citizens' Health Care Working Group (June 2008)

2007

Antitrust Modernization Commission (May 2007)

2006

Texas Tax Reform Commission (March 2006)

2005

Select Bipartisan Committee to Investigate the Preparation for andResponse to Hurricane Katrina (December 2005)

President's Advisory Panel on Federal Tax Reform (November 2005)

Commission on Systemic Interoperability (October 2005)

Commission on Review of Overseas Military Facility Structure of theUnited States: Overseas Basing Commission (August 2005)

Return to Flight Task Group (August 2005)

White House Conference on Cooperative Conservation (August 2005)

Commission on the Intelligence Capabilities of the United States RegardingWeapons of Mass Destruction (March 2005)

2004

United States Commission on Ocean Policy (December 2004)

National Commission on Terrorist Attacks Upon the United States (August2004)

President's Commission on Moon, Mars and Beyond (July 2004)

Coalition Provisional Authority (June 2004)

Back to Top

2003

Columbia Accident Investigation Board (October 2003)

University of North TexasLibrariesGovernment Documents Dept.P.O. Box 305190 Denton, TX 76203-5190 Phone: (940) 565-2870 Fax: (940) 565-2599http://www.library.unt.edu/govinfo

Geographical renamingFrom Wikipedia, the free encyclopedia

Geographical renaming is the act of changing the name of a geographical feature or area. This canrange from the uncontroversial change of a street name to a highly disputed change to the name of acountry. Some names are changed locally but are not recognised by other countries, especially whenthere is a difference in language. Other names may not be officially recognised but remain in commonuse.

There are many reasons to undertake renaming, with political motivation being the primary cause, suchas renaming places to honour Stalin, and reverting to the original names (see de-Stalinization). One ofthe most common reasons for a country changing its name is newly acquired independence. Whenborders are changed, sometimes due to a country splitting or two countries joining together, the nameof the areas can change. This, however, is more the creation of a different entity than an act ofgeographical renaming.

Other more unusual reasons for renaming have included:

To stop having an unusual or embarrassing nameAs part of a sponsorship deal or publicity stunt

A change might see a completely different name being adopted or may simply be just a slightlydifferent spelling.

In some cases established institutions preserve the old names of the renamed places in their names,such as the Pusan National University in Busan, South Korea; the Peking University in Beijing,People's Republic of China; Bombay Stock Exchange, IIT Bombay and the Bombay High Court inMumbai, Republic of India; Persian Gulf, south of Iran (formerly Persia); and the University ofMadras, Madras Stock Exchange, the Madras High Court, and IIT Madras in Chennai, Republic ofIndia.

Contents1 Naming disputes2 Significant name changes

2.1 Countries and territories2.2 Subnational entities2.3 Cities and towns

3 Changes resulting from splits and mergers4 Unusual name changes5 See also6 References7 External links

U.N. Member States

U.S. State DepartmentList of IndependentStates

Mapping.com's list ofWorldwide Country andCity Name ChangesSince 1990

Internet Domains fromthe Internet AssignedNumbers Authority (anagency under ICANN,the Internet Corporationfor Assigned Namesand Numbers)

All the Airport CodesIn The World (about36,000 codes!)

ISO3166-definedcountry codes 240 2-letter codes, 3-lettercodes, and RIPE NCCService Region

Flags of the World, andother information,keyed to each country'sISO3166 Code

Country Informationfrom the CIA WorldFactbook

Countries,Dependencies, and

Name Changes Since 1990: Countries, Cities, and More

An admittedly incomplete and imperfect list of new countriesand cities, and various name changes

Search For Cities and Countries Not Listed Here:

Search

Web mapping.com

1. "New" Countries Since 1990

FORMER USSR:

Estonia

Latvia

Lithuania

Belarus

Ukraine

Moldova

Georgia

Armenia

Azerbaijan

Kazakhstan

Uzbekistan

CheapInternationalCallsGet A Free LebaraSIM (Was £2.99)Limited Offer -Order YoursOnline!www.Lebara-Mobile.co.uk

MontenegroPropertyChoose from over185,000 propertiesat the UK'sleading holidayportal!Holiday-Rentals.co.uk

country brandpositioningAcanchi, foundedby Fiona Gilmore,specialists incountrypositioning.www.acanchi.com

Russian RiverCruisesThe only 5-starvessel on theRussianwaterwayswww.exeterinternational.com

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http://www.txt2pic.com/

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PQ7797.B635.B5213 2000(persistent catalog #)

(current physical location)

Hayden Library, 3rd floor, shelf # 53

The Renear/Palmer article states....

http://dx.doi.org/10.1002/meet.2009.1450460141

http://www.sciencemag.org/cgi/doi/10.1126/science.1157784

(persistent URI)

(current web location)

Library card catalog maps catalog# to current physical location of content CrossRef maps DOI to current web location of content

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• PURL

• XRI

• Numly Numbers

• NOIDs

• URL Shorteners?

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“Persistence” isn’t a technical issue, it is a

social issue.“CrossRef links are as persistent as CrossRef staff”

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• Members must assign DOIs and deposit metadata

• Members are expected to assign DOIs and deposit metadata on a current basis (i.e. content should be deposited in CrossRef as soon as possible after being published)

• Members have an obligation to maintain the metadata and URLs associated with all registered DOIs.

• Members have an obligation to link references in the journal articles they deposit via CrossRef

• Before a member may retrieve DOIs for references in an article from a particular journal, the member must be depositing articles from that journal on a current basis.

• DOI-routed reference links enabled by CrossRef must resolve to a response page containing no less than complete bibliographic information about the target content, with information about how the content can be acquired and/or a hyperlink leading to the content itself.

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CrossRef Demographics

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< $1 million revenue

$275 annual membership fee

80% members are “small” publishers

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New CR Members are

• Small

• Open Access

• From BRIC or Developing Countries

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Reduce Financial Burden

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Other options• Continue to hold line on

fees

• More sponsoring entities and service providers

• Bundle DOIs with membership

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Reduce Technical

Burden

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Members have an obligation to link references in the journal articles they deposit via CrossRef.

http://goo.gl/ZV3t3l

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Cited By

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Helping The Small

Publisher

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Depositor Tools

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Investigation of the Staphylococcus aureus GraSRRegulon Reveals Novel Links to Virulence, StressResponse and Cell Wall Signal Transduction PathwaysMelanie Falord1,2, Ulrike Mader3, Aurelia Hiron1,2, Michel Dbarbouille1,2, Tarek Msadek1,2*

1 Institut Pasteur, Biology of Gram-Positive Pathogens, Department of Microbiology, Paris, France, 2 CNRS, URA 2172, Paris, France, 3 Interfaculty Institute for Genetics and

Functional Genomics, Department for Functional Genomics, Ernst Moritz Arndt University, Greifswald, Germany

Abstract

The GraS/GraR two-component system has been shown to control cationic antimicrobial peptide (CAMP) resistance in themajor human pathogen Staphylococcus aureus. We demonstrated that graX, also involved in CAMP resistance andcotranscribed with graRS, encodes a regulatory cofactor of the GraSR signaling pathway, effectively constituting a three-component system. We identified a highly conserved ten base pair palindromic sequence (59 ACAAA TTTGT 39) locatedupstream from GraR-regulated genes (mprF and the dlt and vraFG operons), which we show to be essential fortranscriptional regulation by GraR and induction in response to CAMPs, suggesting it is the likely GraR binding site.Genome-based predictions and transcriptome analysis revealed several novel GraR target genes. We also found that theGraSR TCS is required for growth of S. aureus at high temperatures and resistance to oxidative stress. The GraSR system haspreviously been shown to play a role in S. aureus pathogenesis and we have uncovered previously unsuspected links withthe AgrCA peptide quorum-sensing system controlling virulence gene expression. We also show that the GraSR TCS controlsstress reponse and cell wall metabolism signal transduction pathways, sharing an extensive overlap with the WalKR regulon.This is the first report showing a role for the GraSR TCS in high temperature and oxidative stress survival and linking thissystem to stress response, cell wall and pathogenesis control pathways.

Citation: Falord M, Mader U, Hiron A, Debarbouille M, Msadek T (2011) Investigation of the Staphylococcus aureus GraSR Regulon Reveals Novel Links toVirulence, Stress Response and Cell Wall Signal Transduction Pathways. PLoS ONE 6(7): e21323. doi:10.1371/journal.pone.0021323

Editor: Malcolm James Horsburgh, University of Liverpool, United Kingdom

Received May 4, 2011; Accepted May 25, 2011; Published July 1, 2011

Copyright: ! 2011 Falord et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permitsunrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Funding: This work was supported by research funds from the European Commission (StaphDynamics [LHSM-CT-2006-019064] and BaSysBio [LSHG-CT-2006-037469] grants), the Centre National de la Recherche Scientifique (CNRS URA 2172), Agence Nationale de la Recherche (ANR GrabIron and NaBab), and the InstitutPasteur (PTR Nu256 and PTR Nu336). Melanie Falord received a Young Scientist Fellowship from the Conseil Pasteur-Weizmann. The funders had no role in studydesign, data collection and analysis, decision to publish, or preparation of the manuscript.

Competing Interests: The authors have declared that no competing interests exist.

* E-mail: [email protected]

Introduction

The opportunistic pathogen Staphylococcus aureus is both acommensal and a major Gram-positive pathogen, causing a varietyof infections ranging from superficial skin abscesses to more seriousdiseases such as pneumonia, meningitis, endocarditis, septicemiaand toxic shock syndrome [1]. The ubiquitous nature of thispathogen stems mostly from its capacity to survive a large variety ofenvironmental conditions as well as an impressive ability to resisthost innate immune defense mechanisms and produce systemicinfections, often in healthy humans [2,3]. This unique adaptivepotential has made S. aureus one of the major causes of nosocomialinfections today, compounded by the rapid emergence of multipleantibiotic-resistant strains over the past few decades [4], particularlymethicillin and vancomycin-intermediate resistant strains (MRSAand VISA). Until recently, vancomycin had remained the weaponof last resort, but the recent appearance of the enterococcal vanAvancomycin-resistance gene cluster in S. aureus highlights thegrowing threat this bacterium poses to human health and theurgent need for developing novel therapeutic approaches [5,6].

Cationic antimicrobial peptides (CAMPs) are an importantcomponent of host innate immunity and understanding themolecular mechanisms involved in resistance is a key factor in

staphylococcal treatment research. CAMPs have both cationic andamphipathic properties and are classified according to their lengthand secondary structure [7]. They are produced by certainimmune, skin and epithelial cells in all living kingdoms, as defensesagainst microbial proliferation, and many are known to act byforming pores in the cell membrane, through interactions withbacterial cell envelope components [8]. However, recent work hasshown that several CAMPs, including indolicidin and colistin, canalso kill by inhibiting intracellular processes such as protein andDNA synthesis as well as septum formation and division [9].

To counteract CAMP antimicrobial activity during infection,Gram-positive bacteria have developed several resistance mecha-nisms, including degradation, sequestration or electrostatic repulsion[10]. In Bacillus subtilis and related Gram-positive bacteria, D-alanylation of wall teichoic acids (WTAs) and lipoteichoic acids(LTAs), mediated by the DltABCD enzymes, as well as MprF-dependent lysylination of phosphatidylglycerol, prevent CAMP-binding by increasing the bacterial surface positive charge [10,11].

Two-component systems (TCSs) play an important role in thesemechanisms by coordinating the expression of resistance genes,when CAMPs are detected at the cell surface. TCSs are typicallycomposed of a membrane histidine kinase (HK), acting as a signalsensor/transducer, through phosphorylation of its cognate response

PLoS ONE | www.plosone.org 1 July 2011 | Volume 6 | Issue 7 | e21323

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