ASSESSMENT OF ION EXCHANGE CHROMATOGRAPHY …
Transcript of ASSESSMENT OF ION EXCHANGE CHROMATOGRAPHY …
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ASSESSMENT OF ION EXCHANGE CHROMATOGRAPHY
PARAMETERS FOR DESIGNING AN OPTIMUM PURIFICATION
PROFILE OF L-ASPARAGINASE FROM PSEUDOMONAS
FLUORESCENS
Hrishikesh Mungia, Rohan Dighe
b and V.G.Shanmuga Priya
a*
aDepartment of Biotechnology, KLE Dr M S Sheshgiri College of Engineering and
Technology, Belgaum (India).
bSerum Institute of India Limited Pune(India).
ABSTRACT
Purification is a vital step in the downstream processing of any
industrially important compound. The purification profile must be
designed by considering the efficacy of each step along with
economics involved. The current study is based on designing an
optimum purification profile for L-asparaginase, comprising
ammonium sulphate fractionation, diafiltration and ion exchange
chromatography. Maximum enzyme recovery in the first step was
observed at 60% saturation of ammonium sulphate. The removal of
ammonium ions and concentration of the sample was carried out using
a 30 kDa poly ether sulphone diafiltration membrane. The optimization
of purification profile was mainly concentrated on assessment of static
and dynamic binding capacity of Seralite SRC 120 ion exchange resin
to L-asparaginase. Optimum adsorption of enzyme to resin was
observed at pH 4 within 70 minutes. The adsorption pattern was best explained by Langmuir
isotherm. The adsorbed enzyme was eluted by using 0.2 M NaCl. The analysis of Height
Equivalent to Theoretical Plates (HETP) shows 77% column performance, indicating the set
parameters are optimum for performance of the column.
KEYWORDS: L-asparaginase, Purification, optimization, ion exchange chromatography,
adsorption, HETP.
World Journal of Pharmaceutical Research SJIF Impact Factor 5.990
Volume 4, Issue 7, 1101-1114. Research Article ISSN 2277– 7105
Article Received on
30 April 2015,
Revised on 25 May 2015,
Accepted on 14 June 2015
*Correspondence for
Author
V.G.Shanmuga Priya
Department of
Biotechnology, KLE Dr
M S Sheshgiri College of
Engineering and
Technology, Belgaum
(India).
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INTRODUCTION
The enzyme L-asparaginase finds immense applications in cancer therapeutics and has
shown promise for Acute Lymphoblastic Leukemia (ALL) treatment in children.[1]
Tumor
cells are unable to synthesize asparagine, thus increasing the asparagine requirement of
leukemic cells and consequently their dependency on circulating asparagine,[2]
L-
asparaginase transforms L-asparagine into L-aspartate and ammonia via a covalently bound
intermediate involving a β-aspartyl enzyme.[3]
This deprives the leukemic cell of circulating
asparagine, leading to cell death. A number of microorganisms have been studied for
production of L-asparaginase including Escherichia coli,[4]
Serratia marcescens,[5]
Enterobacter cloacae,[6]
Pseudomonas stutzer,[7]
and Erwinia sp.[8]
Downstream purification of proteins involves a capture step, resulting the removal of
impurities and in concentration of product. Ion-exchange chromatography has proved to be a
very important tool in downstream purification,[9]
The popularity of ion-exchange
chromatography is due to its widespread applicability, high resolving power, high capacity,
simplicity and ease of control in preservation of biological activity during processing,[10]
These could be achieved by studying the relationship between the physicochemical properties
of preparative ion-exchange resins and chromatographic protein retention, thus offering a
potential to guide for selection process in adsorbent design.[11]
The design of an optimum purification profile for L-asparaginase comprises ammonium
precipitation, removal of salt, filtration and concentration of loading sample. These steps are
equally important as they help in reducing the impurity level in the sample carried on to the
ion-exchange column. It also helps in eliminating smaller molecules like peptides and other
proteins. It is to be ensured that while designing the overall purification profile the enzyme
stability and activity are maintained by selecting optimum conditions with respect to pH,
temperature and concentration of ions.
In this study, a purification profile is designed in accordance with the stability of enzyme.
The profile is focused on optimization of chromatography parameters by evaluation of pH,
adsorption time, adsorption isotherm, static binding capacity, HETP parameters and dynamic
binding capacity. Thus, the study helps in estimating and increasing the efficiency of the
matrix used for purification.
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MATERIALS AND METHODS
Microbial strains: Pseudomonas fluorescens NCIM2639 was acquired from National
Collection of Industrial Microorganisms (NCIM), Pune, India, and maintained on nutrient
agar slants (pH 7.4).
Biochemical assay of L-asparaginase
L-Asparaginase activity was determined by the method of Shirfrin et a, [12]
In brief, 0.1 ml
of 189 mM L-asparagine was added to 1.0 ml of 50 M Tris-hydrochloride buffer (pH 7.4), the
volume was made up to 2 ml by distilled water. The reaction was quenched after 30 min by
the addition of 100 ul of 1.5M trichloroacetic acid (TCA). 200 ul supernatant was diluted in
deionized water, followed by the addition of 0.5 ml Nessler’s reagent to a total volume of 5
ml. The liberated ammonia was determined spectrophotometrically at 436 nm. The
concentrations of ammonia were determined from a standard curve with ammonium sulfate
as the source of dissolved ammonia. 1 I.U (International Unit) of L-Asparaginase is equal to
1 µmole of ammonia liberated from L-Asparagine per minute.
Production and recovery of L-asparaginase enzyme
The optimum production of L-asparaginase from Pseudomonas fluorescens was carried by
using optimized production condition as described in an earlier study.[13]
The cell-free
supernatant from the culture was tested for enzyme activity and protein concentration. The
supernatant was further subjected for ammonium sulphate precipitation.
Ammonium sulphate precipitation
Finely powdered ammonium sulphate was added to the cell-free supernatant till 20%
saturation.. After 2 h, the mixture was centrifuged and the supernatant was brought to 40%
saturation of ammonium sulphate.. The step was repeated for 60, 80 and 100% saturation.
Precipitates obtained were dissolved in 10 mM Phosphate buffer pH7.
Stability of Crude enzyme
The stability of enzyme activity was examined by incubating crude enzyme in the pH range
2-10 for 24 h. The enzyme activity was estimated at every 4 h interval.
Removal of salt and Concentration of protein
Microfiltration
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The solution obtained after ammonium sulphate precipitation was pretreated to remove
impurities and prevent clogging of Diafiltration membrane. The sample was subjected to
micro-filtration using a micro-filtration assembly with membrane pore size of 0.45 μ m. The
enzyme activity, volume and protein content were analyzed for the filtrate after micro-
filtration.
Diafiltration
An polyether sulphone ultra filtration assembly with a membrane molecular weight cut off of
30 kDa was selected. Cross flow filtration technique was applied for salt removal and protein
concentration. The removal of ammonium ions was confirmed by using monograph
method.[14]
The enzyme activity, volume and protein content were analyzed for the retentate
after diafiltration.
Optimization of Ion exchange chromatography
L-Asparaginase isolated from Pseudomonas stutzeri has a pI of 6.38.[7]
Hence a cation
exchange chromatography was used for the adsorptive purification of L-Asparaginase from
the crude fermentation broth subjected to ammonium precipitation and diafiltration. Based on
economics Seralite SRC-120 ion exchange resin was selected for study.
Batch Studies
Batch studies were carried out to determine the adsorption equilibrium time, nature of
adsorption isotherms, static binding capacity of the resin and the optimal binding and elution
conditions. This data helps in carrying out the purification in column mode with efficiency.
Optimization of binding pH
Sodium acetate buffers (10 mM, pH 3-6) were used to optimize the protein binding to the
resin. 1 ml of resin suspension equilibrated in each pH was added to 9 ml of diluted
diafiltered sample and incubated at 25°C for 2.5 h at 100 rpm. The equilibrium samples were
immediately assayed and the partition coefficients were calculated by using equation 1 as
given by Manera et al,[15]
f = Q/C …… (1)
where f = partition co-efficient, Q and C are enzyme equilibrium activities at equilibrium of
adsorbed and free enzyme respectively. Optimum pH for adsorption was determined using a
graph of partition co-efficient v/s pH,
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Determination of adsorption equilibrium time
The adsorption equilibrium time was determined as discussed by Makino et al,[16]
3ml of
resin suspension equilibrated in 10 mM sodium acetate buffer pH 4 was mixed with 27 ml
diafiltered enzyme solution with two different initial L-asparaginase concentrations, 24.8
U/ml and 10.1 U/ml. The mixtures were incubated at 25°C for 2.5 h at 100 rpm. The aliquots
from each mixture were assayed every 10 min. Equilibrium time was estimated from a graph
of ratio of final concentration to initial concentration v/s time was plotted.
Adsorption isotherm studies
To determine the adsorption isotherm models and the parameters that best fit the process,
enzyme binding to resin was measured at different enzyme concentrations.. Initial and final
enzyme activities were measured. The isotherm indicates the nature of adsorption and was
determined by plotting a graph of Q vs C.
Optimization of elution conditions
The elution of bound L-Asparaginase was carried out by varying the ionic strength of the
elution buffer. 1 ml of resin suspension equilibrated with 0.01 M Sodium acetate buffer at pH
4 was added to 9 ml of clarified fermentation broth containing L-Asparaginase and incubated
for 10 minutes. Supernatant from each tube was discarded and the resin was washed with
wash buffer. The supernatant was then discarded, and 5 ml of elution buffer containing
varying concentrations of NaCl from 0.2 to 1 M was added to each of the tube. The
supernatant was then assayed for L-Asparaginase activity and total protein concentration.
Column studies
HETP and Dynamic binding capacity analysis
The selected resin Seralite SRC-120 was packed in column with a bed height of 10 ± 0.2 cm.
The column was equilibrated with 15 column volume of 0.01 M Sodium acetate buffer pH 4.
Concentrated diafiltered sample was loaded on the column and the column effluent fractions
were collected at a flow rate of 1.0 ml/min. L-Asparaginase activity was analyzed (U/ml) for
all the fractions . A breakthrough curve was plotted as effluent enzyme activity (U/ml) vs.
cumulative volume (ml) for enzyme adsorption. The dynamic capacity of resin and column
performance was determined by evaluation of height equivalent to theoretical plate (HETP)
value. The HETP analyses were carried by using breakthrough data. A comparative analysis
was carried out by comparing the theoretical HETP with actual HETP data to give a clear
picture on column efficiency.
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Purification of L-asparaginase on column
The Seralite SRC-120 was packed in column with bed height of 10 ± 0.5 cm. The column
was equilibrated with 15 column volumes of 0.01 M Sodium acetate equilibration buffer at
pH 4. Concentrated diafiltered sample with a volume of 20% breakthrough volume was
loaded. The column was washed with 3 column volumes of 0.01 M Sodium acetate buffer at
pH 4 to remove any unbound proteins. The elution of bound L-Asparaginase was carried out
using the selected elution buffer with optimum molarity of salt concentration. The elution
fractions were collected at a flow rate of 1 ml/min. Collected fractions were assayed for L-
Asparaginase activity and total concentration of protein.
RESULTS AND DISCUSSION
Production and recovery of L-asparaginase enzyme
During the production of L-asparaginase enzyme from Pseudomonas fluorescens, a
maximum enzyme activity of 206 U/ml was recovered from the culture supernatant The
maximum recovery of enzyme activity was obtained at 60-80% of ammonium sulphate
precipitation, with 1.5 fold increase in activity and with a purification factor of 4.41 (Table
1).
Table1: L-asparaginase enzyme recovery from fermented broth by fractional
ammonium sulphate precipitation.
The validation of ammonium sulphate precipitation was carried out by direct use of
ammonium sulphate to cause direct precipitation instead of fractional precipitation. The
enzyme recovery is as shown in Table 2.The direct precipitation helped in better enzyme
recovery. 71.1% of enzyme was recovered from crude fermented broth by direct increase in
ammonium salts concentration to 60% as compared to 31% of enzyme recovery obtained by
40-60% by individual fractional increase in ammonium salt concentration.
(NH4)2SO4
fractionation
ml
Enzyme
activity
(U/ml)
Total
Activity
U
Protein
mg/ml
Total
Protein
mg/ml
Specific
activity
U/mg
Purification
factor
Recovery
%
Crude 0 % 50 206.63 10331.5 0.76 38 271.88 1 100
0-20 % ------- ----- ----- ------ -------- ------- -------
20-40 % 10 210 2100 0.62 6.2 338.7 1.24 20.32 40-60 % 10 240.2 2402 0.43 4.3 558.6 2.05 23.24 60-80 % 10 290.2 2902 0.39 3.9 744.1 2.85 28.08
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Table2: L-asparaginase enzyme recovery from fermented broth by direct increase in
concentration of ammonium sulphate precipitation.
Stability of Crude enzyme activity
The stability of enzyme activity for 24 h in various pH conditions is as shown in Fig. 1. The
enzyme activity is highly stable between pH 5-6. The enzyme activity was unstable at pH 2
and 9. There is a gradual decrease in activity over time period when incubated in pH 3. The
decrease in activity is more rapid in pH 8 as compared to pH 3.
Figure1: Stability of enzyme activity in varying pH incubated for a time interval of
24hrs
Removal of ammonium ions and Concentration of protein
Diafiltration
The ammonium precipitated solution was subjected to microfiltration in order to prevent
clogging of diafiltration membrane. The filtrated sample was further subjected to
diafiltration. As a result there is an increase in purification factor and recovery of enzyme
(Table 3). Diafiltration increased the recovery of enzyme by 1.27 fold and the purification
factor by 1.45 fold. The total removal of ammonium ions was observed after 7 cycles of
diafiltration as confirmed by monograph method.
(NH4)2SO4
fractionation
ml
Enzyme
activity
(U/ml)
Total
Activity
U
Protein
mg/ml
Total
Protein
mg/ml
Specific
activity
U/mg
Purification
factor
Recovery
%
Crude 0 % 50 206.63 10331.5 0.96 48 215.23 1 100
0-80 % 20 280.63 5612.6 0.56 5.6 1002.25 4.65 54.32
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Table3: Assessment of enzyme activity and protein concentration after removal of
ammonium ions by filtration techniques
Fraction ml Enzyme
activity U/ ml
Total
activity U
Protein
mg/ml
Total
protein mg
Specific
activityU/mg
Purification
factor
Recovery
%
Micro filtered
broth 20 277.63 5552.6 0.55 5.5 1009.56 4.69 53.74
UF Retentate 5 1418.5 7092.5 1.21 4.84 1465.39 6.81 68.49
Optimization of Ion exchange chromatography parameters by batch studies
Optimization of binding pH
The assessment of enzyme activity for unbound enzyme to the resin was used to estimate the
partition co-efficient. The partition co-efficient indicates the efficacy of resin at a particular
pH. Fig. 2 shows the binding pattern of enzyme to resin with respect to pH. The maximum
binding was observed at pH 4.
Figure2: Binding efficacy of Seralite SRC-120 at different pH
Determination of adsorption equilibrium time
The equilibrium time assists in studying the time taken by the enzyme to bind to the matrix.
The data will help to set the flow parameters during column studies giving sufficient time for
binding of enzyme. The enzyme took 70 min to reach adsorption equilibrium (Fig. 3). . The
data indicates the equilibrium time is independent of concentration, and also provides basis
for carrying out adsorption isotherm studies.
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Figure 3: Adsorption equilibrium of Seralite SRC-120 for varying enzyme
concentration.
Adsorption isotherm studies
The isotherm studies were carried out in order to know the binding efficiency of L-
asparaginase to Seralite SRC-120. One of the bases for adsorption is the equilibrium
distribution of L-asparaginase between two phase’s i.e. Seralite SRC-120 and buffer. This
equilibrium is represented as an equation called isotherm. The enzyme analyses were carried
out to understand the nature of isotherms. From Fig. 4 it can be interpreted that the nature of
isotherm belongs to Type I adsorption isotherm and the nature was best explained by
Langmuir isotherm (Equation 2).
Adsorption isotherm equation
Q= Qmax.C/ [Kd + C]…….. (2)
Where Kd = Langmuir isotherm constant. Qmax= maximum matrix binding capacity. The
maximum adsorption capacity and Kd was determined by plotting a graph of 1/Q Vs 1/C (Fig.
5). The maximum capacity of the matrix (Qmax) for L-asparaginase was found to be 142.85
U/ml with a Kd of 7.42. The value of Kd indicates that 7-8 molecules of enzyme adhere to one
molecule of matrix.
Figure4: Langmuir isotherm for L-asparaginase
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Figure5: Linearization of Langmuir isotherm for L-asparaginase
Optimization of elution conditions
Of the different concentrations of NaCl tested for L-asparaginase elution, it was observed that
a concentration of 0.2 M NaCl in 0.01 N Sodium acetate buffer at pH 4, gave the maximum
elution of bound L-asparaginase. 54.92% enzyme was recovered with a purification factor of
1.79 (Table 4).
Table4: Optimization of elution conditions for L-asparaginase adsorbed on Seralite
SRC120
Sample Total
Enzyme (U)
Protein
(mg)
Specific activity
(U/mg) Purification factor
% Enzyme
recovery
Bound 113 1.63 69.32 1 100
0.1 M 42.2 0.60 70.33 1.01 37.34
0.2 M 62.06 0.50 124.12 1.79 54.92
0.3 M 50.12 0.44 113.9 1.64 44.35
0.4 M 48.29 0.49 98.55 1.42 43.29
0.5 M 46.08 0.61 75.54 1.09 40.77
COLUMN STUDIES
HETP and Dynamic binding capacity analysis
Breakthrough curve is important in chromatography for studying the effects of mass transfer
during loading and for measuring the dynamic capacity of the column. Thus, a breakthrough
curve gives an estimate of the height equivalent to theoretical plates (HETP) and the overall
mass transfer from the mobile phase to the adsorbent phase under real operating conditions.
The Enzyme breakthrough cure is as shown in Fig. 6. The evaluation HETP analysis is based
on the following data and equations:
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Height of resin bed (L) =10cm, Radius of column (r) =0.5cm, Volume of resin VC =15.71cm2,
Initial concentration (Co) =211U/ml, Area under Curve (AUC) =
(Fig. 6).
Total enzyme loaded during breakthrough (W)= Ci.(VE – VB)………. (3)
Enzyme adsorbed during breakthrough (Wa) = (W- AUC)…………... (4)
Fraction of CE adsorbed f = (Wa/W)… ……………………………....(5)
Length of adsorption zone ( La)= L.(VE-VB)/ [VE-(1-f).(VE – VB )]…. (6)
Number of transfer unit (NTU)= 16.[VR / (VE-VB)]2…………………… (7)
Height equivalent to theoretical plate (HETP) = La/ N…………………. (8)
Utilization of Theoretical Efficiency UTE%= (Htheoretical / Hactual) 100%... (9)
1. Estimation of theoretical HETP
a. Exhaust volume VE= 0.95.Co=22.95ml.
b. Break through volume VB=0.05.Co=14.45 ml
c. Retention volume VR=0.5.Co=18.45 ml.
Substituting the above values in equation 3-8, we acquire Htheoretical=0.055cm and
NTUtheoretical=83.63.
2. Estimation of actual HETP
From graph (Fig. 6)
a. Exhaust volume VE= 24ml.
b. Break through volume VB=13 ml
c. Retention volume VR= (VE+ VB)/2=18.5 ml.
Substituting the above values in equation 3-8, we acquire Hactual=0.071cm and
NTUactual=67.6.
Number of theoretical plates is a measure of column efficiency (number of theoretical plates
per meter of chromatographic bed) under specified experimental conditions. The more the
number of plates over a certain length, the lower is HETP and higher is the efficiency of the
system. The actual HETP and NTU value estimated was found to be in comparison with
theoretical value for enzyme adsorption, suggesting a good performance of the ion exchange
resin. As a comparison of actual Vs theoretical column performance on a percentage basis,
UTE was estimated using equation 9. It was estimated around 77% and generally varies
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between 60 and 90 percent, indicating closeness of actual column performance to the
theoretical prospective. The dynamic capacity was estimated using equation 10.
DBC= CoVB/VC………….. (10)
The DBC was estimated to 174.60 U/ml is high as compared to static capacity for the resin,
the reasons for which could be appropriate volumetric flow rate (1.0 ml/min), good packing
of the column and void fraction as explained by Van Deemter equation.
…….. (11)
Where A, B, and C represent axial dispersion, molecular diffusion, and non equilibrium
effects, viz., solid-liquid film mass transfer, effective intra-particle diffusion and adsorptive
effects, respectively whereas u is the superficial velocity or flow rate m/s.
Figure6: Enzyme break through curve for HETP and dynamic binding analysis. AUC:
Area under the curve represented by the following equation
Purification of L-asparaginase on column
Column purification was operated by setting conditions and parameters of column based on
the above acquired data. The profile yielded a purification of 79.65% of L-asparaginase with
a fold purity of 2.2 (Table 5).
Table5: Purification of L-asparaginase on Seralite SRC-120
Sample Total Enzyme
(U)
Total Protein
(mg)
Specific activity
(U/mg)
Fold
purity
%
Recovery
Diafiltered 546 9.58 57 1 100
IEC 434.9 4.25 90.56 1.58 79.65
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CONCLUSION
The study is based on evaluation and optimization of each step involved in purification of
enzyme. The optimized process for recovery of L-asparaginase from fermented broth was
carried by precipitation of enzyme by using 60% saturation of ammonium sulphate.
Diafiltration was used to remove salts and concentrate the enzyme with minimal losses, . The
optimization of purification profile was focused on assessment of operating parameters for
ion exchange chromatography. Optimum adsorption of enzyme to resin was observed at pH
4 within 70 min. The adsorption pattern was best explained by Langmuir isotherm. The
isotherm estimated a static binding capacity of 142.85 U/ml. The adsorbed enzyme was
eluted by using 0.2 M NaCl. The Dynamic Binding Capacity was estimated to 174.60 U/ml
and is high as compared to static binding capacity for the resin. Also, the analysis of Height
Equivalent to Theoretical Plates (HETP) shows 77% column performance, indicating the set
parameters are optimum for performance of column. The column purification was operated
by setting conditions and parameters of column based on the above acquired data. The profile
yielded a purification of 79.65% of L-asparaginase enzyme from the diafiltered sample.
Hence, an optimum purification profile for recovery of L-asparaginase from fermented broth
was established.
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