ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are...

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ARE YOU READY FOR SEND? Presented by Roman Radelicki Clinical Data Programmer Coordinator SGS Life Science Services

Transcript of ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are...

Page 1: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

ARE YOU READY FOR SEND?

Presented by Roman Radelicki

Clinical Data Programmer Coordinator

SGS Life Science Services

Page 2: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

2 © CDISC 2015

INTRODUCTION

n  Assigned to drive the process of evaluating §  what is needed to implement SEND §  how best to implement this within our organization.

n  Followed the CDISC SEND training as a starting point and based on this I have put together an implementation plan for our organization.

Page 3: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

3 © CDISC 2015

FDA BINDING GUIDANCE

n  From December 2016 nonclinical data will have to be submitted in SEND format

n  Start to think about how SEND will be implemented

n  What does it take for an organization with SDTM knowledge to be able to deliver SEND datasets

Page 4: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

4 © CDISC 2015

CDISC STANDARDS

n  SEND finds its foundations in the SDTM standard

n  Knowledge gained and software tools built for SDTM can be used to a great extent

n  Relatively small updates are needed to adapt current processes

n  Create a new library for SEND like you would create a new library for §  new/upgraded SDTM versions §  Sponsor specific SDTM versions

SDTM

SDTMIG SENDIG

Page 5: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

5 © CDISC 2015

TOOLS AND PROCESSES

n  Annotation

n  Conversion process §  Map, merge and convert source data (EDC, third party

data, raw data files) §  Scheduling/follow-up complete conversion process

n  Transfer of datasets (draft, interim, final)

n  Format of transferred datasets (SAS, XPT, Dataset-XML, CSV)

n  Creation of define metadata

n  Validation checks

n  Trial design tables

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6 © CDISC 2015

Interventions

• Exposure

Events

• Disposition

Findings

• Body Weights • Body Weight Gains • Clinical Observations • Death Diagnosis • ECG Test Results • Food and Water Consumption • Laboratory Tests Results • Macroscopic Findings • Microscopic Findings • Organ Measurements • Palpable Masses • Pharmacokinetics Concentrations

• Pharmacokinetics Parameters • Subject Characteristics • Tumor Findings • Vital Signs

Trial Design

• Trial Elements • Trial Arms • Trial Sets • Trial Summary

Special Purpose

• Demographics • Comments • Subject Elements

Relationships

• SUPPQUAL • RELREC • POOLDEF

SENDIG V3.0 DOMAIN MODEL

Page 7: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

7 © CDISC 2015

SDTM & SEND DOMAINS

SE

CO

DM

EX

DS EG

VS

PC

PP SC

LB

RELREC

TA

MI TS TE

SDTM SEND

Tria

l on

hum

ans

Study on anim

als

BW

BG CL

TX DD

FW OM

MA TF

PM POOLDEF

SV

CM

SV

EC

PR SU

AE HO CE

DV

MH

MB IS DA PE MO RP

DD TU MS

TV

IE TR SS

QS

RS

SR FA TI

TD

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8 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

n  Trial design §  No TV, TI, TD §  TX: trial sets

n  Subject Pooling §  POOLDEF: POOLID vs. USUBJID

n  Tumor.xpt

n  DM differences §  No SUPPDM

n  No SV / VISIT / VISITNUM, only VISITDY used

Page 9: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

9 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Trial Design

n  No TV, TD or TI

n  TX: Trial Sets

SEND - Trial Design

• Trial Elements • Trial Arms • Trial Sets • Trial Summary

SDTM - Trial Design

• Trial Elements • Trial Arms • Trial Inclusion/Exclusion Criteria

• Trial Disease Assessment

• Trial Visits • Trial Summary

TX: Trial Sets •  Subdivide Arms •  Group multiple arms

Page 10: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

10 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Excerpted from CDISC SEND Implementation Guide Version 3.0

TX: Trial Sets

Page 11: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

11 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Excerpted from CDISC SEND Implementation Guide Version 3.0

TX: Trial Sets

Page 12: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

12 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Excerpted from CDISC SEND Implementation Guide Version 3.0

TX: Trial Sets

Page 13: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

13 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Excerpted from CDISC SEND Implementation Guide Version 3.0

TX: Trial Sets

Page 14: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

14 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Excerpted from CDISC SEND Implementation Guide Version 3.0

TX: Trial Sets

Page 15: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

15 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Subject Pooling

n  POOLDEF

n  POOLID vs. USUBJID

Pools of subjects are defined in POOLDEF domain

POOLID and USUBJID are mutually exclusive. Therefore either USUBJID or POOLID should be populated.

POOLID values are unique for a given set of subjects

SEND - Relationships

• SUPPQUAL • RELREC • POOLDEF

SDTM - Relationships

• SUPPQUAL • RELREC

Excerpted from CDISC SEND Implementation Guide Version 3.0

Page 16: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

16 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Tumor.xpt

n  According to regulatory guidelines for the submission of carcinogenicity data.

Domains required for creation tumor.xpt file: •  DM (Demographics) •  DS (Disposition) •  EX (Exposure) •  MI (Microscopic Findings) •  TF (Tumor Findings) •  TX (Trial Sets)

Page 17: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

17 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

Demographics (DM)

SEND - Demographics

• STUDYID • DOMAIN • USUBJID • SUBJID • RFSTDTC • RFENDTC

• SITEID

• BRTHDTC • AGE

• AGETXT • AGEU • SEX • SPECIES • STRAIN • SBSTRAIN

• ARMCD • ARM

• SETCD

SDTM - Demographics

• STUDYID • DOMAIN • USUBJID • SUBJID • RFSTDTC • RFENDTC • RFXSTDTC • RFXENDTC • RFICDTC • RFPENDTC • DTHDTC • DTHFL • SITEID • INVID • INVNAM • BRTHDTC • AGE

• AGEU • SEX

• RACE • ETHNIC • ARMCD • ARM • ACTARMCD • ACTARM • COUNTRY • DMDTC • DMDY

SEND - SUPPQUALS only for General Observation Domains

à No SUPPDM

Page 18: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

18 © CDISC 2015

DIFFERENCES BETWEEN SEND & SDTM

No Subject Visits (SV)

In SEND only the planned study day variable is used: VISITDY (no VISITNUM/VISIT)

SEND - Special Purpose

• Demographics • Comments • Subject Elements

SDTM - Special Purpose

• Demographics • Comments • Subject Elements • Subject Visits

Page 19: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

19 © CDISC 2015

CONCLUSIONS

n  FDA binding guidance §  December 2016 §  Start thinking about implementation SEND

n  SEND foundations SDTM

n  SDTM knowledge gained and tools built can be used

n  Some specific SEND - SDTM differences may cause updates

Page 20: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

20 © CDISC 2015

QUESTIONS?

Where did you store the nonclinical data?

But you told me to SEND it...

Page 21: ARE YOU READY FOR SEND? - Lex Jansen · 2015. 10. 23. · POOLID vs. USUBJID Pools of subjects are defined in POOLDEF domain POOLID and USUBJID are mutually exclusive. Therefore either

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THANK YOU FOR YOUR ATTENTION

Roman Radelicki Life Science Services Clinical Data Programmer Coordinator SGS Belgium NV Generaal De Wittelaan 19A b5 2800 Mechelen – Belgium Phone: +32 (0)15 29 93 45 Fax: +32 (0)15 27 32 50 E-mail : [email protected] www.sgs.com/CRO

WHERE EXPERIENCE MEETS SPEED