ARCHER CSE Service Quarterly Report · o Nick Brown, MONC - highly scalable cloud modelling on the...
Transcript of ARCHER CSE Service Quarterly Report · o Nick Brown, MONC - highly scalable cloud modelling on the...
ARCHERCSEServiceQuarterlyReport
Quarter42016
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1. ExecutiveSummaryThisreportcoverstheperiod:1October2016to31December2016inclusive.
• CentralisedCSETeam:o WehaveproducedabestpracticeguideforparallelI/OonARCHERthatwill
helpusersgetthebestperformanceoutoftheARCHERfilesystems:http://www.archer.ac.uk/documentation/best-practice-guide/io.php
o TheparallelI/Ostudieshaveledtousproposingthatdefaultstripingbechangedtoimproveresponsivenessandperformanceformostusers.
o InconsultationwithmajorusergroupswehavecompletedapaperproposinganupdatedsetofARCHERbenchmarks.
o WehaveworkedwithSPandCraytoexpandtheperformancemetricsautomaticallygatheredonthesystemtoincludeenergyandmemoryusage.ThisdataisnowimportedintoSAFEandcanbequeriedbyuserstounderstandbettertheresourcestheyareusing.
• Training:o Wedelivered13.5days(250student-days)offace-to-facetraininginthe
quarterat4differentlocations,withanaveragefeedbackscorebetterthan“verygood”.
o Aone-dayhands-oncourse“UsingKnightsLandingManycoreProcessorsonARCHER”wassuccessfullyrunforthefirsttime,andwillformthebasisofanextended2-daycoursetobeheldearlyin2017.
o AnewKNL-specificversionoftheARCHERDrivingTesthasbeenlaunched.o BasedonfeedbackfromARCHERChampions,wehavealsolaunchedaversion
oftheARCHERdrivingtesttargetedatpackageusers(i.e.non-developers).o Theplanforthe2017trainingprogrammewasapprovedbytheARCHER
trainingpanel.• ARCHEROutreachProject:
o TheARCHERImagecompetitionwasverysuccessful,with43imagesreceived.TheARCHERCalendarwasproduced,printedandpostedbeforeChristmas.
o WHPCheldafulldayworkshopandhostedtwoBoFsatSC16andwasrecognisedonceagainintheannualHPCWireReaders’andEditors’ChoiceAwards,receivingtheReaders’Choice:WorkforceDiversityLeadershipAward;theEditors’Choice:WorkforceDiversityLeadershipAwardandtheReaders’Choice:OutstandingLeadershipinHPC,forToniCollis,DirectorofWHPC.
o WedemonstratedWeeArchieattheIETEngineeringtheFutureFestivaltoanestimated300schoolchildren.TheeventwasorganisedbytheInstituteofEngineeringandTechnologyinLondononthe6thOctober.
o WeeArchlet,asmallerbuildyourownRaspberryPiclusterhasbeendevelopedandwillbetestedinQ12017.
o WeheldanOutreachBOFatSC16.Priortothis,aQ&AstylearticlewaspublishedbyHPCWire,whichraisedtheprofileoftheevent.
o Onenewcasestudyisonlineand25eCSEprojecthighlightsarenowavailable.See:http://www.archer.ac.uk/casestudies/andhttp://www.archer.ac.uk/community/eCSE/
• eCSE:o Of72projectsfromthefirst9eCSEcalls,66havenowstartedand47have
alreadycompleted;theremaining6projectsareduetostartwithinthenextquarter.Ofthosecompleted,40finalreportshavebeenreceived.
o TheeCSE09callreceived19proposals;5ofthesewereselectedforfundingatthePanelmeetingon13December,awardingatotalof62personmonths.FollowingonfromfeedbackfromthePanel,theproposalformwasstreamlinedforthiscall.
o AcallforEarlyCareerResearcherPanelObserverswasopenedon16December2016andwillclose17January2017.SuccessfulcandidateswillbechosentoattendPanelmeetingsduring2017.
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2. CollaborationsandOutputsSummary
• Presentations:o AndyTurnerandAdrianJackson,ParallelModelsandScaling,KeynoteTalk,
EuroMPI,Sep2016,EdinburghUKo NickBrown,MONC-highlyscalablecloudmodellingonthelatest
supercomputers,SC16,Nov2016,SaltLakeCity,USAo RupertNash,HemeWeb:Simple,reproduciblebloodflowsimulationinthe
cloudusingcontainers,RCUKCloudWorkshop,Nov2016,London,UKo AdrianJacksonandDavidHenty,ARCHERHPCTraining,ThirdSCWorkshopon
BestPracticesforHPCTraining,Nov2016,SC16,SaltLakeCity,USAhttps://sites.google.com/a/lbl.gov/hpc-training-best-practices/workshops/sc16
o AdrianJackson,ParallelPerformance:MovingMPIapplicationstothenextlevel,IntelHPCDevelopersconference,Nov2016,SaltLakeCity,USAhttp://www.intel.com/content/www/us/en/events/hpcdevcon/technical-sessions.html
o AdrianJackson,NEXTGenIO:MovingI/OintothememorysystembyAdrianJackson,Nov2016,ExascaleI/O:Challenges,InnovationsandSolution,SC16,SaltLakeCity,USA
o NickBrown,MONC-highlyscalablecloudmodellingonthelatestsupercomputers,ComputingInsightUK,Dec2016,Manchester,UK
• Meetings:o AndyTurner,EPSRCSoftwareWorkshop,Oct2016,London
• Papers:o Y.A.G.Fosado,D.Michieletto,J.Allan,C.A.Brackley,O.Henrich,D.Marenduzzo,A
SingleNucleotideResolutionModelforLarge-ScaleSimulationofDoubleStrandedDNA,SoftMatter12,9458-9470(2016).
o O.Wiese,D.Marenduzzo,O.Henrich,MicrofluidicFlowofCholestericLiquidCrystals,SoftMatter12,9223-9237(2016).
• Posters:o NeeloferBanglawala,BespokebonemodellingwithVOX-FE,SC16,Nov2016,
SaltLakeCity,USAo AdrianJackson,MarioAntonioletti,VadimBiktashev,IrinaBiktasheva,,Sanjay
KharcheandTomasStary,BeatBox—HPCSimulationEnvironmentforBiophysicallyandAnatomicallyRealisticCardiacElectrophysiology,SC16,Nov2016,SaltLakeCity,USA
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3. ForwardLook
• KNLSystem:o WewillusethenewARCHERbenchmarks(andothersuitablebenchmarks)to
comparetheperformanceoftheKNLsystemtothemainARCHERsystemandpublishapublicreportwiththefindingstohelptheusercommunitybetterunderstandtheopportunitiesandchallengesassociatedwithKNLtechnology.
• ApplicationLandscape:o Usingthenewmemoryandenergyusagemetricsthatarebeingpulledintothe
SAFEdatabase,wewillanalysethedatareportonenergyandmemoryusageontheservicetoprovideinsightintousage.Thiswillbeusefulinformationforoptimisingthecurrentsystemconfigurationandforanyfuturesystemprocurements.
• ParallelI/O:o AnupdatetotheparallelI/OwhitepapercomparingperformanceonARCHER
withothersystemshasbeenwrittenandiscurrentlyinreview.Thiswillbereleasedandpublicisedshortly.
• Training:o Wewillanalysefeedbackfromtherecenttrainingimpactsurveyandcirculate
thereport.o Anextended2-dayversionoftherecentKNLcoursewillbedeveloped.o Basedonuserfeedbackfromrecentcourses,weplanto:
§ continuetoruninteractiveonlinequizzesduringcoursesusingtheSocrativesystemasthesehavereceivedpositivefeedback;
§ considerthepossibilityofdevelopingnewcoursesonsoftwaretestingandhigh-levelsoftwarearchitecture(feedbackreceivedfrom“PracticalSoftwareDevelopment”);
§ lookatrevisingthematerialfromthenewcourse“WritingScalableParallelApplications”tointroduceamotivatingexampleprogram(fromCFD)attheoutset,returningtoitthroughoutthecourse.
• ARCHEROutreachProject:o EPSRChaveadisplayattheAmericanAssociationfortheAdvancementof
SciencemeetinginBostoninFebruary.WeeArchiehasbeeninvitedtoformpartofthisdisplayandNickBrownwillbeattendingthemeetingtodemonstratethesystem.
o Wewilladdnewinterviewstothe“FacesofHPC”pagetoincreasethenumberofinterviewswhilemaintainingabroadspectrumofindividuals.
o Inearly2017,ARCHERwillrunanIntroductiontoMessagePassingProgrammingcoursethatwillbeaimedattheWomeninHPCcommunity.
o PlanningforWHPCeventsin2017isalreadyunderwaywithsubmissionsforworkshopsatISC2017andSC17,andplanningforthethirdannualWHPCUKeventinthefirsthalfof2017.
o Planningforthe3rdARCHERChampionsWorkshopisunderway.ThiswillbeheldinconjunctionwithHPC-SIGinLeedson9thand10thFebruary,andwillfocusoninteractionswiththenewTier2centres.
o WehaveaboothattheBigBangFairinMarch2017,andeffortinQ12017willfocusonpreparingforthisevent.
o Furthercasestudiesinthepipelineincludeabiomolecularsimulationproject.Wealsoplantodevelopcasestudieswithaselectionofimagecompetitionentries.
• eCSE:o Weareplanningaheadfortheremaining3eCSEcallstobalancetheawardof
theremainingpersonmonthssoastoprovidemaximumbenefittoARCHERusersgiventheremainingtimeleftontheARCHERservice.
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4. ContractualPerformanceReportThisisthecontractualperformancereportfortheARCHERCSEServicefortheReportingPeriods:October2016,November2016andDecember2016.ThemetricswerespecifiedbyEPSRCinSchedule2.2oftheCSEServiceContract.
CSEQueryMetrics
• QE1:ThepercentageofallqueriesnotifiedtotheContractorbytheHelpDeskinaQuarterthattheContractorrespondsto,andagreesaworkplanwith,therelevantEndUserwithin3workinghoursofreceivingthenotificationfromtheHelpDesk.ServiceThreshold:97%;OperatingServiceLevel:98%.
• QE2:ThepercentageofallqueriesnotifiedbytheHelpDesktotheContractorthathavebeensatisfactorilyresolvedorotherwisecompletedbytheContractorwithina4-monthperiodfromthedateitwasfirstnotifiedtotheContractor.ServiceThreshold:80%;OperatingServiceLevel:90%.
• TA1:ThepercentageofalltechnicalassessmentsofsoftwareproposalsprovidedtotheContractorbytheHelpDeskinanyServicePeriodthataresuccessfullycompletedbytheContractorwithin10daysofthetechnicalassessmentbeingprovidedtotheContractorbytheHelpDesk.ServiceThreshold:85%;OperatingServiceLevel:90%.
• FB1:ThepercentageofEndUsersatisfactionsurveysforCSEqueriescarriedoutinaccordancewiththePerformanceMonitoringSystembytheContractorshowingthelevelofEndUsersatisfactiontobe“satisfactory”,“good”or“excellent”.ServiceThreshold:30%;OperatingServiceLevel:50%.
Period Oct-16 Nov-16 Dec-16 Q42016
Metric Perf. SP Perf. SP Perf. SP Perf. Total
QE1 100% -2 100% -2 100% -2 100% -6
QE2 100% -2 100% -2 100% -2 100% -6
TA1 100% -1 100% -1 92% -1 100% -3
FB1 100% -2 100% -2 100% -2 100% -6
Total -7 -7 -7 -21Pink–BelowServiceThreshold
Yellow–BelowOperatingServiceLevelGreen–AtoraboveOperatingServiceLevel
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TrainingMetrics
• FB2:ThepercentageofalltrainingsatisfactionsurveyscarriedoutinaccordancewiththePerformanceMonitoringSystembytheContractor)ineachQuarterthatarerated“good”,“verygood”or“excellent”.ServiceThreshold:70%;OperatingServiceLevel:80%.
Period Oct-16 Nov-16 Dec-16 Q42016
Metric Perf. SP Perf. SP Perf. SP Perf. Total
FB2 100% -1 100% -1 100% -1 100% -3
Total -1 -1 -1 -3Pink–BelowServiceThreshold
Yellow–BelowOperatingServiceLevelGreen–AtoraboveOperatingServiceLevel
ServiceCredits
Period Oct-16 Nov-16 Dec-16
TotalServicePoints -8 -8 -8
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5. CSEQueriesQueriesResolvedinReportingPeriod
MetricDescriptions
In-Depth AlltechnicalqueriespassedtoARCHERCSEteamCourseRegistration RequestsforregistrationonARCHERtraining
coursesorenquiriesaboutregistrationTechnicalAssessment:<Category> RequestforTechnicalAssessmentsofapplications
forARCHERtimeeCSEApplication QueriesrelatingtoeCSEapplications
Atotalof269querieswereresolvedbytheCSEserviceinthereportingperiod.Metric Oct-16 Nov-16 Dec-16 Total %TotalCourseRegistration 94 92 6 192 71.4%In-Depth 8 9 16 33 12.3%eCSEApplication 4 3 11 18 6.7%TechnicalAssessment:Grant 1 2 10 13 4.8%CourseEnquiry 0 1 5 6 2.2%TechnicalAssessment:Instant 1 2 2 5 1.9%TechnicalAssessment:HEC 1 0 0 1 0.4%TechnicalAssessment:RAP 0 0 1 1 0.4%8queryfeedbackresponseswerereceivedonIn-depthqueriesinthereportingperiod.Thisrepresentsa28%returnrateforfeedbackforms.All8responsesregisteredascoreof“Excellent”.ResolvedIn-Depthqueriesfellintothefollowingcategories:Category NumberofQueries %Queries3rdPartySoftware 25 75.8%Userprograms 4 12.1%Compilersandsystemsoftware 2 6.1%Batchsystemandqueues 2 6.1%
In-DepthQueryHighlights
AsmallnumberofIn-DepthquerieshavebeenselectedtoillustratetheworkofthecentralisedCSEteamoverthereportingperiod.Q770825:FHI-AimsAuserwasseeingissueswiththematerialsscienceapplicationFHI-AIMSfreezingatrandompointswhenrunningtheircalculations.TheCSEteamisolatedtheproblemtoasubtleissuewithfloatingpointprecisiondifferencesbetweendifferentparallelprocessesintheapplication,whichwasleadingtothenon-deterministicbehaviour.Theuserwasadvisedonbestpracticeforsettingthemultipleconvergencetolerancesintheapplicationsothatsuchissuescouldbeavoided,andisnowabletoruntheircalculationssuccessfully.Q781145:performancevariabilityUserreportedthattheyseelargeperformancevariationswithidenticalrunsoftheirsimulationusingtheirownapplication(from~20hto~40htimetosolution)andwonderedhowtheymightimprovethissituation.TheCSEservicetookadeepdiveintotheperformanceoftheapplicationtounderstandtheperformancevariation.Theanalysiswasverycomplexastherewerethreeseparateaspectsthatwereintroducingvariability:Lustremetadataserverperformance;Lustrebandwidthcontention;andinterconnectcontention.Weprovidedanupdatedroutinetoimprove
8theperformancewithrespecttotheLustremetadataserver(theoriginalversionwasissuingmanyneedlessopen/closeoperations)andprovideddatatoquantifythevariationfromtheothertwosourcessothattheusercouldbuildenoughcontingencyintotheirjobs.Advicewasprovidedonhowtheusermaychangetheirapplicationtopotentiallydecreaseinterconnectcontentiongoingforwards.Throughoutthequery,theCSEteamkepttheuserawareofhowweweremakingprogresssothattheyunderstoodtheprocessofanalysingtheperformanceandwouldbeabletoputitintopracticethemselvesinthefuturewhendevelopingtheirsoftware.
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In-DepthQueryAnalysis
ThehistogrambelowshowsthetimetoresolutionforIn-Depthqueriesinthecurrentreportingperiod.Themedianresolutiontimeduringthisperiodis1weeks(medianresolutiontimesince1Jan2014is2weeks).
PlotofnumbersofInDepthqueriesreceivedperquarter:
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TechnicalAssessmentAnalysis
AhistogramofthetimetocompletionforTechnicalAssessments(seebelow)revealsthatthemediancompletiontimeforthisquarterwas2days(mediancompletiontimesince1Jan2014is3days).
PlotofnumbersofTechnicalAssessmentsreceivedperquarter:
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6. CentralisedCSETeam:StrategicPrioritiesProgressIncollaborationwithusergroupsandtheotherServicepartners,theCSEserviceidentifiedseveralpriorityareastoinvesttechnicaleffortfromthecentralisedCSEteam.Thissectionsummarisesprogressinthereportingperiodintheseareas.
ParallelI/OPerformance
WehaveupdatedthebenchioparallelI/Oapplication(https://github.com/EPCCed/benchio)toimplementafile-per-processschemeforparallelI/Otocomplimentthesingle-shared-fileschemethatwasalreadyavailable.Thisnewfunctionalityhasbeenusedtobenchmarkthefile-per-processschemeforparallelI/Oandcomparetheperformancetothesinglesharedfilescheme.TheresultsfromthisanalysishaveformedthebasisoftheARCHERparallelI/Obestpracticeguide(http://www.archer.ac.uk/documentation/best-practice-guide/io.php)andthesoontobereleasedwhitepapercomparingparallelI/Oacrossdifferentsystems.ThisworkhasalsoledtoarecommendationthattheARCHERservicechangesthedefaultLustrestripevaluefrom4to1.Thischangewillleadtoimprovedinteractiveresponsivenessandconsistencyofperformanceforalluserswithlittleimpactonperformance.Userswhoperformlarge-scale,shared-fileparallelI/Oalreadyneedtoexplicitlysetthestripecountto-1(maximumstriping)toobtainusefulperformancesothischangeshouldnotimpactthemunduly.Futureworkinthisactivitywilllookat:
• ApplicationspecificI/Operformanceusingmonitoringdatacollectedautomaticallyfromtheservice;
• Statisticalperformancedatatobetterunderstandthevariabilityofperformanceandtheoriginsofanyvariability.
UnderstandingtheARCHERApplicationLandscape
Workhasfocussedontwoareas:• AutomaticcollectionofextendedapplicationdatafromARCHERintoSAFE;• CompletionoftheupdatedARCHERbenchmarkproposalpaperandcollectionofthe
applicationbenchmarkcases.SAFEhasbeenextendedtopulldatafromtheCrayALPSschedulerlogsandfromtheCrayResourceUsageReporting(RUR)tool,andtolinkthedataprovidedbythesesourcestotheexistingjobrecordsinthedatabase.
• CrayALPSlogsprovideinformationontheapplicationbeingusedineachjob(e.g.VASP,Gromacs)anddetailedinformationonhowthecomputeresourcesareusedwithinthejob(numberofprocessespernode,numberofsub-jobswithinthemainjob).
• RURrecordsprovideinformationontheamountofmemoryusedbyeachjobandtheenergyusagebyeachjob.
ByintegratingthisdataintoSAFE,wegaintheabilitytoanalysethedatainwaysbrokendownbyanypropertythatSAFEknowsabout.Forexample,wecouldanalyseapplicationusagebyprojectorresearcharea,orwecouldanalyseenergyusagebyapplicationtype.Wehavecompletedthebenchmarkproposalpaperinconsultationwithmajorusergroupsandhavestartedtogatherthebenchmarkcases.Sofar,wehavegatheredcasesfor3outofthe5applicationbenchmarksandareindiscussionwithusergroupsaroundtheother2applications.FutureworkincludesanalysingthenewdatainSAFEandrunningtheapplicationbenchmarkcasesonARCHERandARCHERKNL.
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7. TrainingInthereportingperiod,theCSEServicehasprovidedatotalof13.5days(250student-days)offace-to-facetrainingacrossfourdifferentlocationsand2.5daysofinteractiveonlinetutorials(averageattendance15pertutorial).Month Dates Course Location Days AttendeesOct2016 11-12
12GPUProgrammingwithCUDAUsingKNLonARCHER
LondonOnline
1.50.5
20
19 BiologicalsystemsinLAMMPS Online 0.5 Nov2016Dec2016
12-3923
28-29
3030Nov–2Dec30Nov–1Dec12-13
UsingKNLonARCHERDataCarpentryLarge-EddySimulationCP2K:RecentperformanceimprovementsSingle-NodePerformanceOptimisationAdjointoceanmodellingMessage-PassingProgrammingwithMPIHands-OnIntroductiontoHPCWritingScalableParallelApplicationsusingMPI
EdinburghEdinburghOnlineOnlineManchesterOnlineLondonNewcastleManchester
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0.50.5
2
0.5322
1522
13
21
26
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Onthefeedbackforface-to-facecourses,attendeesratethecourseonascaleof1-5(“Verybad”,“Bad”,“Good”,“Verygood”and“Excellent”).Theaveragefeedbackusingthismetricwas4.4,i.e.betterthan“VeryGood”.Usersprovided61feedbackforms,aresponserateof45%.Attheendoftheir12-monthproject,DrivingTestusersareaskedtocompleteasurveyabouttheirexperiences.WerecentlyreceivedverypositivefeedbackfromtwouserswhowerepreparingforafullapplicationforARCHERtime:“ARCHERprovidedeverytoolIexpectedfromanHPCcluster.Ithinktheschemeworkedwell,youshouldprovidethesamequalityinthefuture.MyexperiencewithARCHERisverygood.TheHPCteamisveryhelpfulandIthinktheARCHERdevelopmentenvironmentisuser-friendly.”“Entirelysuccessful.IwasabletogetmyapplicationsrunningonARCHERwithminimumfuss,atleastinpartbecausetheCray/SLURM/intel/gnuenvironmentiswelldesigned(andcommon).”
0.0%
10.0%
20.0%
30.0%
40.0%
50.0%
60.0%
Excellent VeryGood Good Bad VeryBad
ThisquarterPastaverage
1320daysofface-to-facetrainingareplannedforthefirstquarterof2017,plus1.5daysofonlinetraining.Month Dates Course Location Days AttendeesJan2017 11
31Jan–2Feb
ModernFortranCrayOptimizationWorkshop:ARCHERandKnightsLanding
OnlineBristol
0.53
Feb2017 88-10TBC
TBC
ParallelI/OPerformanceAnalysisWorkshopIntroductiontoScientificProgrammingwithPythonMessage-PassingProgrammingwithMPI
OnlineSouthamptonLondonLondon
0.5323
Mar2017
8TBCTBC
TBC
29-31
TBCEfficientParallelIOonARCHERProgrammingtheManycoreKnightsLandingProcessorSingle-SidedCommunicationsShared-MemoryProgrammingwithOpenMP
OnlineDurhamLondonWarwickSouthampton
0.52223
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8. OutreachProjectDiversity
DiversityinHPC(www.hpc-diversity.ac.uk)
Wecontinuetopopulatethe“FacesofHPC”page,whichaimstocelebratediversityintheHPCcommunity.Currentlywehave12interviewsand13historicalbiographiesavailableonline.Overthenextyearwewillcontinuetoaddinterviewstothesepagestoincreasethenumberofbiographieswhilemaintainingrepresentationfromabroadspectrumofindividuals.
WomeninHPC
WHPCheldafulldayworkshopandhostedtwoBoFsatSC16.Bothwerewellattended,withtheworkshopbeingthefirstfulldayeventwehaveheldandthemostsuccessfulworkshoptodate.Of49feedbackformsthatwerecollectedfortheworkshop,respondentsgaveanaveragescoreof4.5outofamaximumof5fortheirexperienceattheworkshop.Thesessionsincluded:methodsforimprovingdiversityintheworkplace;earlycareerdevelopmentincludingpostersforearlycareerwomen;‘SkillstothriveintheHPCcommunity’;aswellascasestudiesontacklingunconsciousbias,stereotypethreatandimplicitbias.
WHPChasbeenrecognisedonceagainintheannualHPCWireReaders’andEditors’ChoiceAwards,receivingthefollowinghonours:
• Readers’Choice:WorkforceDiversityLeadershipAward• Editors’Choice:WorkforceDiversityLeadershipAward• Readers’Choice:OutstandingLeadershipinHPC,forToniCollis,DirectorofWHPC
Inearly2017,ARCHERwillberunninganIntroductiontoMessagePassingProgrammingcoursethatwillbeaimedattheWomenintheHPCcommunity.Inaddition,planningforWHPCeventsin2017isalreadyunderwaywithsubmissionsforworkshopsatISC2017andSC17dueinearlyFebruary2017,andplanningforthethirdannualWHPCUKeventinthefirsthalfof2017.
UserEngagementandSkillsDevelopment
Planningforthe3rdARCHERChampionsWorkshopisunderway.ThiswillbeheldinconjunctionwithHPC-SIGinLeedson9thand10thFebruary.ItwillfocusonintegrationwiththenewTier2centresandregistrationisalreadyopen.TheARCHERchampionswebsitecontainsalistofthecurrentARCHERchampions:http://www.archer.ac.uk/community/champions/names/Finally,wearecurrentlyplanningthenextHands-onPortingandOptimisationWorkshopforQ22017.
Outreach
ThelastquarterhasseensignificantactivityaroundOutreach,withthedevelopmentofWeeArchlet,thebuildingofasecondWeeArchie,workingwithalocalschooltodeveloptheteacherspack,developmentoftheCFDwingdemo,demonstratingweeARCHIEattheIETEngineeringtheFutureFestivalinLondon,andholdinganoutreachBOFatSC16.WeeArchlet:asmallerbuildyourownRaspberryPiclusterhasbeendeveloped.InstructionshavebeenwrittenandwillbetestedinternallyinJan2017withanexpectationofreleasetoexternaltestersinFeb/March2017.
15Teacher’spackandschoolmaterial:workhasprogressedontheschoolmaterials,focusingonthebasicsofcomputersandmovingintotheuseofcomputersinscience.WehavebeenworkingcloselywithalocalPrimaryschooltohelpdevelopthesematerials,workingwithtwoupperprimaryclasses.Thiswillcontinuein2017withtopicsincludingprogramminglinkedtoscienceexperiments,supercomputerusesandconcepts.Asecond“WeeArchie”:hasbeenbuilttomeetdemand.AWing(CFD)Simulationdemonstrationisunderdevelopment.Thishasbeentestedatapubliceventandfutureworkwillfocusonprovidingamoreintuitivefeedbackmechanismforuserstoseetheirwingperformance.Thedemonstrationframework,whichtheWingSimulationisthefirsttouse,willbeupdatedtoreflectfeedbackandobservedperformanceissuesduringQ12017.SC16OutreachBOF:weranaBoFatSupercomputingentitled“HPCOutreach:Promotingsupercomputingtothenextgeneration”.Theaimofthiswastobringtogetherpeoplewhoarecurrentlydoing,orwouldliketodo,outreachandthentoshareideas,successstoriesandmaterials.PriortotheBoFaQ&AstylearticlewaspublishedbyHPCWire(https://www.hpcwire.com/2016/11/09/bof-boost-supercomputing-outreach-skills/)whichraisedtheprofileoftheevent.TheBoFwasledbyEPCCtogetherwithrepresentativesfromPRACE,XSEDE,SouthernCaliforniaEarthquakecentre,andGeorgiaInstituteofTechnology.IETEngineeringtheFutureFestival:organisedbytheInstituteofEngineeringandTechnology,thiswasheldinLondononthe6thOctoberwithanaimofcelebratingtheachievementsoftheglobalengineeringcommunity.WedemonstratedWeeArchie,usingthenewCFDWingdemo,toanestimated300schoolchildren.
ImpactMaterial
Twonewcasestudieshavebeendeveloped.Oneiscurrentlyonline:
• Onenewcasestudyonline:UnderstandingchangesintheGangesriverdeltaunderclimatechangehttps://www.archer.ac.uk/casestudies/ARCHER_casestudy_Bangladesh.pdf
TheotheriscompleteandwillbepublishedonthewebsiteandpublicisedinJan2017:
• Anewfrontierformaterialscience:DesigningNanocompositesinthevirtuallaboratoryLeafletsandpostcardswerecreatedforallthecasestudiesanddisseminatedviatheEPCCboothatSC16.25eCSEhighlights(fromcompletedeCSEprojects)arenowonthewebsite.See:http://www.archer.ac.uk/community/eCSE/.Inaddition,consortiumhighlightsareavailableforaselectionofconsortia,forexampleforUKCPandUKCTRD.See:https://www.archer.ac.uk/community/consortia/ukcp/andhttp://www.archer.ac.uk/community/consortia/ukctrf/.TheARCHERImagecompetitionwasverysuccessful,with43imagesreceived.TheoverallwinnerwasDrPeterFalkingham,LiverpoolJohnMooresUniversitywithhis“Thebirthofafootprint”image.TheARCHERCalendarwasproduced,printedandpostedbeforeChristmas.In2017wewillcontinuetodevelopnewcasestudiestoensurethisremainsfreshandrepresentativeofthescienceandimpactonARCHER.Furthercasestudiesinthepipelineincludeabiomolecularsimulationproject.Wealsoplantodevelopcasestudieswithaselectionofimagecompetitionentries.
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SummaryReportforARCHERChampionsWorkshop1
JosephineBeech-BrandtApril2016ThefirstARCHERChampionsWorkshoptookplaceinEdinburghinMarchandwasalunchtime-lunchtimeonedaymeeting,includinganeveningmeal.Therewere23attendeesand5bursarieswereawardedtocoverreasonabletravelandaccommodationcosts.AsthiswasthefirstworkshopageneraloverviewofseveralaspectsofARCHERwascoveredandalsodiscussionsregardingtheobjectivesforChampions.
TopicsCovered:• WelcomeandObjectivesforARCHERChampions
• OverviewofARCHERasaNationalresourceandhowitfitswithintheNationalHPCInfrastructure
• MigratingtoARCHER:CommonIssuesEncountered
• ToursofARCHER
• ARCHERTraining:Locations,Topics
• SAFEDemonstration
• OutreachSession
• TheeCSEProgramme
• ARCHERSupportStructure:HowweassistusersandaccessroutesforARCHER
• Discussion:ARCHERChampions,wherenext?
Outcomes:• Feedbackfromattendeeswasverypositive
• MailinglistandARCHERwebsitelistofChampionswerecreated
• SlideswereallplacedontheChampionswebsite
• OpportunitytolinkwithRSEFellowsandalsokeyHPC-SIGpersonnel
• Informationgatheredfromthetourandequipment
• CreatedandstrengthenedlinkswithEPSRC,localandregionalHPCcentres,RSEfellows
• WouldlikefutureeventstobecolocatedifpossiblewithHPC-SIG/RSEevents
• Wouldlikemorediscussionandinteractivesessionsifpossible
• NextChampionseventtobeheldinOxfordatOeRCinSeptemberwithfocusontheeCSEactivity
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SummaryReportforARCHERChampionsWorkshop2
JosephineBeech-BrandtOctober2016ThesecondARCHERChampionsWorkshoptookplaceinOxford(thankstoOeRC)inSeptemberandwasalunchtime-lunchtimeonedaymeeting,includinganeveningmeal.Therewere25attendees,10ofwhichhadattendedthefirstChampionsworkshop,and3bursarieswereawardedtocoverreasonabletravelandaccommodationcosts.Therewasanin-depthlookattheeCSEactivity,asessiononthenewlyannouncedKNLsystem,andupdatesfromothersites.Timefordiscussionsessionswasincluded.
TopicsCovered:• HPCServiceProvisionfortheUK
• GPUProvision
• KNLonARCHER
• ARCHERSAFEUpdatesandDevelopments
• OutreachactivitiesusingWeeArchieasafocus
• GettingstartedonARCHER
• Morein-depthlookattheeCSEactivity
Outcomes:• Goodnumberofattendeeswith10repeatattendees(expandifpossibleinfuture)
• Feedbackfromtheattendees(overallverypositive)
• Discussionsessionswentwell(trytoincludemoreinfuture,oneeachhalfsession)
• ChampionsmakinguseofARCHERChampionsProjecttime
• GoodtogetmoreexternalcontributorsandplantoincreaseforChampions3
• LooktomonitorwhatChampionsaredoing
• OpportunitytoengagewithusersandTier-2sites
• SlideswereallplacedontheChampionswebsite
• SlackchannelwithinRSEspacewascreated
• UseofChampionsemailforTrainingandTier2forlocaldissemination
• NextChampionseventwithHPC-SIGinLeedsinFebruarywithfocusonTier2andTraining
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9. EmbeddedCSE(eCSE)
OverviewofeCSEEffort
• TheeCSEpersonmonthsawardeduptoandincludingthe9theCSEcallareshowninblue• Atleast840personmonthswillbeawardedbytheendoftheproject(14FTEsfor5
years)• 732personmonthshavebeenawardedsofarover72supportedeCSEprojects
eCSECall1–Call9
eCSEcall
No.proposals
No.projectsawarded
No.personmonthsawarded
No.projectsstarted
No.projectscompleted
No.finalreportsreceived
Notes
eCSE01 19 14 132 14 14 14
eCSE02 17 9 82 9 9 8
1latefinalreportisbeingpursued.
eCSE03 16 10 96 10 9 7
1latefinalreportisbeingpursued.Thefinalreportfortheothercompletedprojectisnotdueyet.
eCSE04 16 8 82 8 6 5
1latefinalreportisbeingpursued.
eCSE05 14 8 94 8 7 5
Thefinalreportforthecompletedprojectsarenotdueyet.
19
eCSE06 9 5 47 5 2 1
Thefinalreportforthecompletedprojectisnotdueyet.
eCSE07 16 5 49 5 0 0 eCSE08 21 8 88 7 0 0 eCSE09 19 5 62 0 0 0 Total 147 72 732 66 47 40
• Ariskanalysisiscarriedoutonallsuccessfulproposals.Forthetwomostrecentcalls(eCSE08andeCSE09),allprojectswereidentifiedashavingeitherloworverylowrisk,apartfromthefollowing:
o eCSE08-9wasidentifiedasbeingofmediumriskduetoachangeofstaffing.§ ThenewstaffmemberhasbeenapprovedbythePanelChairandthe
projectisnowawaitingthesigningofthecontract.Wewillmonitorthistoensuretheprojectgetsunderwayandprogressessuccessfully.
o eCSE08-10wasidentifiedasbeingofmediumriskduetoissuesraisedbyCambridgeUniversityinvolvingtheIPandtherelationshipwiththeCASTEPgroup.
§ Theseissuesappeartohavebeenresolvedasacontracthasrecentlybeensigned,butwewillmonitorthisastheprojectprogresses.
o eCSE09-8wasidentifiedasbeingofmediumriskduetohavingbeenawarded19personmonths.ThisisahigherlevelofeffortawardedthanforanyothereCSEproject,where15personmonthswastheprevioushighest.
§ Ofthe19monthsawardedforthisproject,7areforamemberoftheARCHERCSEteamandtheworkwillbemonitoredthroughEPCC'sstandardprojectmonitoringprocesses.Theremaining12areforanexternalmemberofstaffatthePI'sinstitutionandwillbemonitoredviaregularcontactwiththePI.
• ThefollowingARCHERwebinarsweregivenoncompletedeCSEprojects(thefirsttwoweregivenasajointsession):
o 19October2016-eCSE04-07–“Multi-resolutionmodellingofbiologicalsystemsinLAMMPS”,IainBethuneandOliverHenrich
o 19October2016-eCSE05-10–“Multi-resolutionmodellingofbiologicalsystemsinLAMMPS”,IainBethuneandOliverHenrich
o 9November2016–eCSE05-14–“Large-EddySimulationCodeforCityScaleEnvironments”,ZTongXieandVladimirFuka
o 23November2016–eCSE06-6–“CP2K:RecentperformanceimprovementsandnewTD-DFTfunctionality”,IainBethuneandMatthewWatkins
o 30November2016-eCSE03-9-“AdjointoceanmodellingwithMITgcmandOpenAD”,DanJonesandGavinPringle
eCSECall10
• TheeCSE10callopenedon6December2016andwillcloseon31January2017
FutureeCSECalls
• eCSEcallsareruntoaregularschedule.Thefuturecallsare:o eCSE11:opens28March,2017andclosesat4pmonTuesday9May,2017o eCSE12:opens1August,2017andclosesat4pmonTuesday12September,
2017