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Amino acids/subunit 153 113 628. Sipuncula Priapulida Brachiopoda Annelida: Magelona papillicornis...
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Transcript of Amino acids/subunit 153 113 628. Sipuncula Priapulida Brachiopoda Annelida: Magelona papillicornis...
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Amino acids/subunit 153 113 628
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Sipuncula Priapulida
Brachiopoda
Annelida: Magelona papillicornis
marine worms
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Active site Iron porphyrin Dinuclear copperDinuclear
iron
Monomeric Multimeric
N. Terwilliger, J. Exp. Biol.201, 1085–1098 (1998)
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http://notes.chem.usyd.edu.au/course/codd/CHEM3105/Metalloproteins3.pdf
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Crystal structure of hemerytrhin in unloaded state (pdb-code 1HMD)
Dinuclear iron active site fixed by a four-helix bundle
Hexacoordinate Fe(II)
Pentacoordinate Fe(II)
can bind O2
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http://notes.chem.usyd.edu.au/course/codd/CHEM3105/Metalloproteins3.pdf
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Active sites of the reduced forms of Hemerythrin, Ribonucleotide Reductase R2 protein, and the hydroxylase component of Methane Monooxygenase
Extra carboxylates stabilize higher oxidation states
Bridging carboxylates
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Catalytic Cycle of soluble Methane Monooxygenase (sMMO)
Kopp & Lippard, Current Op. Chem. Biol. 2002, 568
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Remember:
Hr and sMMO share the main features:a four-helix-bundle surrounding a Fe-(carboxylato)2-Fe core
but differ in the particular environment of the Fe centers:
-Hr coordination sphere is more histidine rich-Hr permits only terminal O2-coordination to a single iron, while sMMO diiron center presents open or labile coordination sites on both Fe-sMMO shows much greater coordinative flexibility upon oxidation-The larger number of anionic ligands allows sMMO to achieve the FeIV oxidation state needed for oxidation methane.
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Intermezzo: Bioligands
Histidin
pKa (His+) = 6.0 neutral at pH 7, but can be easily protonated, can serve as „proton shuttle“Both tautomers are found as ligands
pKa (His) = 14.4 rarely exists in deprotonated form as bridging ligand (in Cu-Zn superoxide-dismutase)
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Aspartate & Glutamate
pKa (COOH) = 3.9 pKa (COOH) = 4.1 at pH 7 anionic even without coordination to a metal atom
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Cysteinate
pKa (SH) = 8.3 neutral at pH 7. Coordination to a metal atom stabilizes anionic form.
Cys
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Tyrosinate
pKa (TyrH) = 10.1 neutral at pH 7. Coordination to a metal atom stabilizes anionic form.Can be oxidized to a radical Tyr· (see RNR-R2)!
Tyr
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Intermezzo: Bioligands
Methionine
neutral, „soft“ ligand
prefers FeII to FeIII
occurs in cytochromes (electron transfer proteins) where it stabilizes the lower oxidation state
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General rules governing the Redox-potential in a transition-metal complex
Larger number of ligands
Anionic ligands stabilize higher oxidation states
Soft ligands (methionine) stabilize the lower oxidation state
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Porphyrins
Heme a
vinyl farnesyl (isoprenoid chain)
methyl
formyl
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Amino acids/subunit 153 113 628
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Megathura crenulata
Octopus dofleiniPanulirus interruptus
Linulus polyphemus
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Chemistry enabling O2 transport by hemocyanin
2Cu+ + O2 2Cu2+ + O22-
Red. Ox. Ox. Red.
Loading O2:
Unoading O2:
2Cu2+ + O22- 2Cu+ + O2
Ox. Red. Red. Ox.
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Vybrané standardní redukční potenciály při 25°C:F2 (g) + 2 e– = 2 F– (aq) + 2.87
MnO4 – + 8H+ + 5e– = Mn 2+ + 4H2O + 1.51
Cl2 (g) + 2 e– = 2 Cl– (aq) + 1.36
Pt2+ (aq) + 2 e– = Pt (s) + 1.18Br2 (g) + 2 e– = 2 Br– (aq) + 1.07
Fe3+ (aq) + e– = Fe2+ (aq) + 0.77I2 (g) + 2 e– = 2 I– (aq) + 0.54
2 H2O + O2 (g) + 4 e– = 4 OH– (aq) + 0.41
O2 + 2H+ + 2e- = H2O2 + 0.35 (at pH 7)
Cu2+ (aq) + 2 e– = Cu+ (aq) + 0.15 2 H+(aq) + 2 e– = H2 (g) 0.00
Fe2+ (aq) + 2 e– = Fe (s) - 0.45Zn2+ (aq) + 2 e– = Zn (s) - 0.76Al3+ (aq) + 3 e– = Al (s) - 1.67Mg2+ (aq) + 2 e– = Mg (s) - 2.37Na+ (aq) + e– = Na (s) - 2.71Li+ (aq) + e– = Li (s) - 3.04
strong oxidants
strong reductants
stronger oxidant stronger oxidant
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Chemistry enabling O2 transport by hemocyanin
2Cu+ + O2 2Cu2+ + O22-
Red. Ox. Ox. Red.
Loading O2:
Unloading O2:
2Cu2+ + O22- 2Cu+ + O2
Ox. Red. Red. Ox.
O2 stronger oxidant
Cu+ stronger reductant OK
would procede in reverse directionin aqueous solutions at pH 7
But: Tetrahedral Cu- environment in hemocyanin favors Cu+ !
The potential of the Cu 2+/Cu+ couple shifts to 0.3-0.4 V The potentials of both half-reactions become similar The whole reaction becomes reversible
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General rules governing the Redox-potential in a transition-metal complex
Larger number of ligands
Anionic ligands stabilize higher oxidation states
Coordination geometry can stabilize the higher or the lower oxidation stateimposed by the protein
Soft ligands (methionine) stabilize the lower oxidation state
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Hemocyanin: History
1878 Leon Federicq: Sur l‘hemocyanine, substance nouvelle de sang de Poulpe (Octopus vulgaris)
(Compt. Rend. Acad. Sci. 87, 996-998)Discovery
1901 M. Henze: Zur Kenntniss des HaemocyaninsZ. Physiol. Chem. 33, 370Hemocyanin contains copper
1940 W. A. Rawlinson, Australian J. Exp. Biol. Med. Sci. 18,131Oxy-hemocyanin is diamagnetic
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http://webdoc.sub.gwdg.de/diss/2003/ackermann/ackermann.pdf
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On the search for functional hemocyanin model compounds
Karlin et al., JACS 1988, 110, 3690’3692
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The first model complex showing reversible O2 binding by a dicopper unit
Karlin et al., J. Am. Chem. Soc. 1988, 110, 3690-3692
However, this complex differs from oxy-Hc:
Cu-Cu[Å] υ(O-O)[cm-1] UV-VIS
1 4.36 834 440(2000) 525(11500)
590(7600) 1035(160)
Oxy-Hc 3.5-3.7 744-752 340(20000) 580(100)
1
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Model complex showing reversible O2 binding and similar features to Hc
Cu-Cu[Å] υ(O-O)[cm-1] UV-VIS
3.56 741 349(21000) 551(790)
3.5-3.7 744-752 340(20000) 580(100)
2
2
Oxy-Hc
Kitajima et al., J. Am. Chem. Soc. 1989, 111, 8975-8976
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Kitajima et al., JACS 1989, 111, 8975-8976Karlin et al., JACS 1988, 110, 3690’3692
[Cu{HB(3,5-iPr2pz)3}]2(O2)
Functional hemocyanin models
[(tmpa)2Cu2O2]2+
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UV-Vis absorption spectra of the oxy forms of hemocyanin and tyrosinase
d→d
v→d
→d
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5-9 years later (1994, 1998):Active sites in hemocyanins determined by X-ray crystallography
Limulus polyphemus Octopus dofleini
Magnus et al.,Proteins Struct. Funct. Gen.1994 Cuff et al.,J.Mol.Biol.1998
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http://pollux.chem.umn.edu/~kinsinge/new_homepage/research/gss_presentation_3/sld019.htm
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L-DOPAquinone
The enzyme tyrosinase catalyzes the synthesis of the pigment melanin from tyrosine
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Tyrosinase versus Hemocyanin
The coupled binuclear copper sites in tyrosinase and hemocyanin are very similar.Why is then tyrosinase capable of reacting with substrates while hemocyanin is not?
Solomon (Angew. Chem. Int. Ed. Engl. 2001, 40, 4570-450):Difference in accessibility of the active site
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Solomon et al., JACS 1980, 102, 7339-7344, p.7343Angew. Chem. Int. Ed. 2001, 40, 4570-4590
Hypothesis, 1980:
Proof, 1998 (J. Biol. Chem. 273, 25889-25892):
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Hemocyanine active site*
Phe49 blocks accessto active site
When the N-terminal fragment including Phe49 is removed,tarantula hemocyanine shows tyrosinase activity
* From X-ray structure of L.polyphemus Hc., Magnus et al., Proteins Struct. Funct.Gen.19, 302-309
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An earlier model for hemocyanin...
…turned out to be a model for the enzyme tyrosinase!
Karlin et al., JACS 1984, 106, 2121-2128
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Conclusions
In many cases, metalloproteins use the same or similar active site for different purposes.
The strategies to confer a particular activity to a given site include
- Allowing/disallowing access of substrates to the active site (including the dynamics of diffusion of substrate/product)-Modifying the electrostatic potential by mutating the amino acids coordinated to the metal or surrounding the binding pocket-Architecture of the binding pocket defines substrate selectivity and affects energy of transition states→governs reaction outcome