Advancing Science In A Collaborative Web 20 World
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Transcript of Advancing Science In A Collaborative Web 20 World
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USGS National BiologicalInformation Infrastructure Advancing Science in a Collaborative Web 2.0 World
Government 2.0 Boot Camp
Mike Frame
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Session Outline
• Brief Organization Background• Why do we need such tools?• Our organizations current efforts• Where are we going
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USGS Biological Informatics Office
• Headquartered in Reston, VA• Responsible for biological informatics activities within USGS• Programs Major focus:
– Supporting the management, delivery, and utilization of biological data & information regardless of where, what, and who.
• Approximately 60 staff in multiple locations throughout the US• Considerable work is done through partner grants or
cooperative agreements (i.e. content)
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NBII Description and Overarching Goal
• Goal is to maximize the nation’s investment in research and monitoring through improved access to the results of those activities
• Made up of a large, distributed yet interconnected network of people, technologies, standards, data, and organizations that together form a federation
• Provides the enabling infrastructure for making biological data, information, tools and technologies accessible to customers, partners, and others for informed decision-making
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Typical Content
• Metadata• Maps• Data sets• Information Products
– Scientific journal articles– Species profiles
• Monitoring protocols• Tools and software• Electronic Keys • Images• Databases • Web sites• Various other Portlets
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Integrated View - Public NBII
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Data Collection processMicro-level vs. Macro-level research“Virtual” collaborationUI Challenges for diverse audiences “generalized” vs. “one-off” toolsInformation Integration/scale/searchData qualityRequires multiple disciplinesGlobal scopeSustainability of tools, applications, databases
Community Challenges
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What do I mean by Web 2.0
Definitions of Web 2.0 on the Web:My Definition (Key concepts): • Visualization, user interaction, infrastructure, collaboration,
services, enabling, involvement, user driven, distributed authorities, multi-device
Other definitions: • The second generation of the World Wide Web, especially the
movement away from static webpages to dynamic and shareable contenten.wiktionary.org/wiki/Web_2.0
• The use of World Wide Web technology and web design that aims to facilitate creativity, information sharing, and, most notably, collaboration ...www.anvilmediainc.com/search-engine-marketing-glossary.html
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Need for Web 2.0 tools in science
Summary: • Distributed resources• Multi-organizational involvement
– Citizen involvement– Scientists– Educators
• Data quality is paramount• Improved tools needed• Input to policies, decision making• Future generations • Limited resources
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Example efforts
• Data Visualizations via IBM Many Eyes • My NBII Collaboration areas• Ecoinformatics thesauri • NBII SAIN Mashups• Protected Areas & Specimen widget
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Data Visualization Service
• Needed to support:
– Viewing
– Contributions
– Annotations– Reuse
– Integration
– Review
– Improvements
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My NBII Portal (Partner “intranet)
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Content Managers Toolkit
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8 /1 /08 8 /25 /0 8 9 /15 /0 8 10 /5 /0 8 10 /2 5 /08 11 /1 3 /08 12 /8 /0 8 12 /3 0 /08
C on ten t M ana ge rs To o lk it C om m un ity V is its
C om m un ity V is its
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Federal Fish Passage Community
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Ecoinformatics Thesauri
• Using Wiki’s, Blogs, etc. to support concept development and maintenance
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EEA GEMETWho can use it
GEMETGEMETXML (R
DF + SKOS)
SOAP (RDF + SKOS)
XML/RPC
HTTP
display term definitions, translate terms
Web services building custom interfaces
translators
applications that need off-line data
browse GEMET on-line
Web applications using the API to implement searches, definitions, translations, etc.
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EEA GEMETWiki environment
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Results
• Limited success– Languages– Expertise– Small community– Users seem to prefer traditional products– SKOS/RDF version very popular
• Still ongoing
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NBII SAIN Species Mashups
• Designed for
– One-stop-shop for species information in SE
– Integrate diverse sources
• Content Type
• UI Presentation
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RSS – streaming of news, data, conferences, updates, etc.
Wildlife Disease, Mid-Atlantic, Butterflies feeds
NBII Data feeds
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Overall Challenges
• Security• Web 121.x buzz word• Broad involvement• Ensuring Data quality• Performance • Supporting Infrastructure• Expertise/skill set • OMB Paperwork Reduction & Privacy Act• Funding
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Where are we going?
• Deployment of new Search tools with web 2.0 features• Continued growth of My NBII
– Bridging public and private environments• Tool and infrastructure developments• Broader community involvement • Semantic concepts for species, keywords
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Additional References and Contact Information
• http://www.nbii.gov• http://my.nbii.gov • http://search.nbii.gov • http://metadata.nbii.gov• http://geospatial.nbii.gov• http://thesaurus.nbii.gov • http://wildlifedisease.nbii.gov
• http://botany.nbii.gov• http://invasivespecies.nbii.gov• http://sain.nbii.gov• http://main.nbii.gov• http://gapanlysis.nbii.gov• http://www.itis.gov
Questions / Comments / Advice / Opinions
Mike Frame: [email protected]