Acellular Biological Entities: Viruses, Viroids, & Prions (Outline)

• Acellular entities as infectious agents of animal and plant diseases • Structure and functional properties. • Viral structural components: genome (DNA or RNA), capsid, nucleocapsid, and

envelope. Naked and enveloped viruses • Parasitic nature of viruses

– Life cycle of bacteriophages and relationship to human disease – Host-cell specificity: common human diseases – Life cycle of animal viruses and association with susceptibility to infection. – Human genetic variability in susceptibility to viral infections

• Life cycle of the Ebola virus • Life cycle of a retrovirus such as HIV • Role of ancient and current retroviruses:

– In shaping the human genome; addition of genetic variability – as selective pressure for human genetic variability

Acellular Disease-causing biological entities (Health Connection)

Simple infectious agents Virus- genetic material in transit from one host cell to the next

Viroid- Circular naked RNA

Prion- misfolded infectious proteins

Viroids and Prions: The Simplest Infectious Agents

• Viroids are circular RNA molecules that infect plants and disrupt their growth- Cadang-Cadang of coconut trees

• Prions are slow-acting, virtually indestructible infectious proteins that cause brain diseases in mammals

Prion diseases • Prions are mis-folded infectious proteins, lack nucleic

acids • Prions cause disease by converting normal proteins

into the prion version

• Diseases caused by prions affect the nervous system Scrapie in sheep Mad cow disease Kuru in humans Creutzfeldt-Jakob Disease (CJD) in humans Fatal Familial Insomnia (FFI) The Truth Will Out: Is vCJD Caused by BSE?

http://ffh.films.com/PreviewClip.aspx?id=5955 (5 mins)

Acellular Disease-causing biological entities (Health Connection)

Virus • Childhood diseases • Age-independent disease • Emerging diseases – Discovery Channel Video Clip (Textbook site)

Viroid • Plant diseases

Prion • Scarpie • Mad Cow disease • Kuru- Fore tribe of Papua New Guinea

Viruses are genes packaged in protein – Biological non-living entities – Have no cytoplasm – Cannot self-replicate – Cannot metabolize – Genetic material either DNA or RNA never both

Viruses

• To replicate they need to infect a living cell • Every living cells has one or more viruses that

can infect it, specifically.

RNA

Capsomere

Capsomere of capsid

DNA

Glycoprotein 18 250 nm 70–90 nm (diameter)

Glycoproteins

80–200 nm (diameter) 80 225 nm

Membranous envelope RNA

Capsid

Head DNA

Tail sheath

Tail fiber

50 nm 50 nm 50 nm 20 nm (a) Tobacco mosaic virus

(b) Adenoviruses (c) Influenza viruses (d) Bacteriophage T4

Naked Enveloped Complex

Viral Shapes

Viral Structures

• Virion: an individual viral particle • Capsid: protein coat surrounding the nucleic acid Capsid made of individual protein subunits

(capsomeres) gives the virion its shape • Nucleocapsid- nucleic acid and protein capsid

Basis of Host-Range of Viruses

• Host range is determined by “lock-and-key” fit between virus surface and cellular receptors on host cell

• Most viruses infect only specific types of cells in one host Narrow host range with tissue specificity – cold viruses: upper respiratory tract cells. – HIV, AIDS virus: a certain white blood cell. • Some have a broad host-range infecting multiple

species – rabies

Membranous envelope

RNA

Protein coat

Glycoprotein spike

Viral genomes are made of either DNA or RNA – Flu viruses are RNA – Genital warts virus (HPV) and Herpes virus are DNA

viruses http://www.cdc.gov/STD/HPV/STDFact-HPV.htm

HPV Influenza

Plant viruses are serious agricultural pests – Most plant viruses have RNA genomes

Enter their hosts via wounds in the plant’s outer layers

Protein RNA

Emerging viruses threaten human health

Colo

rized

TEM

50,

000×

Colo

rized

TEM

370

,000×

Figure 10.20A, B

Ebola Virus (RNA) SARS Virus (RNA)

Phage DNA

Phage

The phage injects its DNA.

Bacterial chromosome

Phage DNA circularizes.

Daughter cell with prophage

Occasionally, a prophage exits the bacterial chromosome, initiating a lytic cycle.

Cell divisions produce population of bacteria infected with the prophage.

The cell lyses, releasing phages.

Lytic cycle

Lytic cycle is induced

or Lysogenic cycle is entered

Lysogenic cycle

Prophage

The bacterium reproduces, copying the prophage and transmitting it to daughter cells.

Phage DNA integrates into the bacterial chromosome, becoming a prophage.

New phage DNA and proteins are synthesized and assembled into phages.

Bacteriophage Life Cycles

Lytic Cycle

• Attachment • Entry of DNA • Degradation of host DNA • Replication of nucleic acid and synthesis of

viral proteins • Packaging/Assembly of

phage particles (DNA and proteins)

• Release by cell lysis

Bacteriophage Life Cycles Lysogenic Cycle

• Attachment • Entry of DNA • No degradation of host

DNA • Integration of nucleic into

bacterial genome • Prophage: an integrated

phage • Exit to lytic cycle induced

by chemicals and high energy radiation

• One of many reasons for why bacteria cause disease is the production of a toxic protein.

• Some proviral genes code for toxic proteins. • Examples:

o Diphtheria o Botulism o Scarlet fever o E. coli food poisoning

Prophage-mediated Diseases

Animal Virus Life Cycle

• Attachment • Entry ? • Uncoating of virion separate protein from NA • Replication of nucleic acid and synthesis of viral

proteins • Maturation of virions (assembly of NA and proteins) • Release: cell lysis or budding http://www.youtube.com/watch?v=cE

0qdqoBFa8

The Ebola virus – An enveloped RNA (- strand) Entry and exit – http://www.youtube.com/watch?v=57P6MuM3_F8 Pathogenesis – http://www.openculture.com/2014/11/the-ebola-virus-

explained-with-animated-video.html

Transmission Links http://www.cdc.gov/vhf/ebola/transmission/index.html?s_cid=

cs_284 http://www.who.int/mediacentre/factsheets/fs103/en/

The AIDS virus – HIV is an RNA retrovirus – It makes DNA using RNA template – Inside a cell, HIV uses its RNA as a template to make a DNA

copy of itself, which integrates into the host genome. http://www.susanahalpine.com/anim/KubyHTML/HIV.htm

Envelope

Glycoprotein

Protein coat

RNA (two identical strands)

Reverse transcriptase

About 8% of our genome is derived from RNA viruses called retroviruses

- This is evidence of past infection - Sequences tend to increase over time

Viral DNA in the Human Genome

Figure 11.11

Roles of human endogenous retroviruses

Endogenous retroviruses • Placenta formation • Large Brain development • Powerful emotions

Explorer: The virus hunters (DVD) Natgeotv.vom http://channel.nationalgeographic.com/series/expl

orer/3828/Overview#tab-Videos/06253_00

The Virus Hunters (DVD)

• Retroviruses in human genomes (first 12:30 mins)

Role for Viruses in shaping the Human Genome

• Past retroviral infection in a primate ancestor – Insertion of sequences – New proteins or protein domains for host that

maybe beneficial and influence behavior

• Present retroviral infections add to the genetic variability of the human populations

The Virus Hunters (DVD)

• Role of ancient retroviruses in major evolutionary steps

(12:30- 15:30 mins)

The Virus Hunters (DVD)

• Role of integrated viruses in complex emotions and behavior (~40:30 to 46:20 mins)