A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K....

61
A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1 , Elie J. Diner 2 , Claire t’Kint de Roodenbeke 1 , Brandt R. Burgess 1 , Stephen J. Poole 1 , Bruce A. Braaten 1 , Allison M. Jones 1 , Julia S. Webb 1 , Christopher S. Hayes 1,2 , Peggy A. Cotter 1,2*| & David A. Low 1,2* 1 Department of Molecular, Cellular, and Developmental Biology, University of California – Santa Barbara (UCSB), Santa Barbara, California 93106-9625, USA. 2 Biomolecular Science and Engineering Program, University of California – Nature 18 November 2010, 468 p439-442.

Transcript of A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K....

Page 1: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

A widespread family of polymorphic contact-dependent toxin delivery systems

in bacteriaStephanie K. Aoki1, Elie J. Diner2, Claire t’Kint de Roodenbeke1,

Brandt R. Burgess1, Stephen J. Poole1, Bruce A. Braaten1,Allison M. Jones1, Julia S. Webb1, Christopher S. Hayes1,2, Peggy

A. Cotter1,2*| & David A. Low1,2*

1Department of Molecular, Cellular, and Developmental Biology, University of California – Santa Barbara (UCSB), Santa Barbara, California 93106-9625,

USA. 2Biomolecular Science and Engineering Program, University of California – Santa Barbara (UCSB), Santa Barbara, California 93106-9625,

USA.

Nature 18 November 2010, 468 p439-442.

Page 2: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Contact-dependent Inhibition systems

See also: Stephanie K. Aoki et al. (2010). Nature 18 November, vol 468 p439-442.

Page 3: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Science 2 December 2010.

Page 4: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Dr. Felisa Wolfe-Simon

Page 5: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Mono lake, California

Page 6: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Hamonas sp. (halophilic Proteobacteria) bacteria with large vacuoles that may sequester arsenic.

Page 7: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Vertical ‘walking’ Horizontal ‘crawling’

Science 8 October 2010, vol 330 p197.

Page 8: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

The symbiotic bacteria Buchnera are located in specialized cells called bacteriocytes (shown green in figure) in the aphid body cavity. [Drawing by Tomás Lazo]

FISH micrograph of sectioned black bean aphid Aphis fabae hybridized with FITC-labelled DNA probe specific to 16S rRNA of Buchnera (green), with the DNA stain DAPI (blue) as counterstain. [Micrograph by Simon Chandler]

Bacteriocytes in body cavity of aphids.

Page 9: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Buchnera aphidicola

Regiella insecticola

Page 10: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Symbiotic Bacterium Modifies Aphid Body Color

Tsutomu Tsuchida,1*† Ryuichi Koga,2† Mitsuyo Horikawa,3 Tetsuto Tsunoda,3 Takashi Maoka,4 Shogo Matsumoto,1 Jean-Christophe

Simon,5 Takema Fukatsu2*

Science 19 November 2010, 330 p1102-1104.

Page 11: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 12: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Science 3 September 2010, 329 p1197-1201.

Neisseria gonorrhoeae, Moraxella catarrhalis, Haemophilus influenze, and Neisseria meningitidis are human host-specific, specialized mucosal colonizers that recognize and bind to human carcino-embryonic antigen-related cell adhesion molecules (CEACAMd).

Page 13: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Mucosal cell

Neisseriagonorrhoeae

CEACAMTGFbR

CD105 TGFb

b1 Integrin

Activatedb1 Integrin

Inside-out signaling.

Extracellular Matrix

Page 14: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

24 h infection of vaginal epithelium with N. gonorrhoeae

triggers exfoliation of epithelium.

Page 15: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 16: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Bart Knols, medical entomologist University of Wageningen, the Netherlands and 2006 Ig Noble winner awarded the Eijkman Medal 2007 for their combined 20 years of research into insects that transfer tropical infectious diseases, like malaria

Page 17: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Inoculation of Limburger cheese with Brevibacterium linens.

Page 18: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Bart Knols. University of Wageningen

Page 19: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

?

Page 20: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 21: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 22: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Methane production in anaerobic sludge.

Page 23: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 24: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Vaccine targets gut reaction to calm livestock wind.

Nature 13 May 2004, vol 429 p119.

Page 25: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 26: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Eurosurveillance, Volume 15, Issue 2, 14 January 2010 Rapid communications

An outbreak of infection with Bacillus anthracis in injecting drug users in ScotlandC N Ramsay ()1, A Stirling2, J Smith2, G Hawkins1, T Brooks3, J Hood4, G Penrice2, L M Browning1, S Ahmed2, on behalf of the NHS GGC2, on behalf of the Scottish National Outbreak Control Teams1

January 14, 201014 cases, 7 died.

Page 27: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

H2S + HNO3 H2SO4 + NH3

Thioploca chilae

Thiomargaritha namibiensis

Page 28: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Thioploca chilae microbial mat (continental shelf coast of Chile 132,000 km2)

Page 29: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 30: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 31: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 32: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

DistributionTiomargaritha namibiensis

along coast of Namibie

Page 33: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 34: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 35: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 36: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 37: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 38: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 39: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 40: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Acetate

Epithelial cells

Bifidobacterium

carbohydrates

E. coli O157

Stx1/Stx2

Page 41: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Enhanced growth of S. typhymurium in the gut lumen and competitive advantage.

Page 42: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

(1o electron donor)

S4O6=

2 S2O3= (4xS = +8)

(4xS = +10)

2e-

(terminal electron acceptor)

Organics

Page 43: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

2H2S2O3

H2S

H2S4O6

Microbiota

Intestinal epithelial cells

Salmonella-induced inflammation

Salmonella

Neutrophils

thiosulfate tetrathionate

Page 44: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Nature 30 August 2012 vol. 488 p621-626.

Page 45: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Nature 18 July 2013 vol 499 p350-354.

Page 46: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Nature 18 July 2013 vol 499 p350-354.

Page 47: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Nature 2 April 2015 vol 520 p99-103.

Page 48: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Nature 2 April 2015 vol 520 p99-103.

Page 49: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Science 3 December 2010, 330 p1413-1415.

Co-culture of Geobacter metalloreducens (green) and Geobacter sulfurreducens (red).

Page 50: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 51: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

CH3CH2OH

CH3CHO

CH3COOH

H2

H2

2 H2 + 2 SO4= 2 H2S

2 H2 + 2 S 2 H2S

2 H2 + CO2 CH4 + H2O

Sulfate Reducers

Sulfur Reducers

Methanogens

Endergonic reaction

CH3CH2OH 2 CO2 + H2O

Exergonic process

Page 52: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Ethanol

Acetate

Succinate

Fumarate

e-

OmcS

Geobacter metallireducens Geobacter sulfurreducens

pili

Page 53: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 54: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Nature

April 13, 2006

P918.

Page 55: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 56: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

An environmental bacterial taxon with a large and distinct metabolic repertoire

Micheal C. Wilson, Tetsushi Mori, Christian Ruckert, Agustinus R. Uria, Maximilian J. Helf, Kentaro Takada, Christine Gernert, Ursula A. E. Steffens, Nina Heycke, Susanne Schmitt, Christian Rinke, Eric J. N. Helfrich, Alexander O. Brachmann, Cristian Gurgui, Toshiyuki Wakimoto, Matthias Kracht, Max Crusemann, Ute

Hentschel, Ikuro Abe9, Shigeki Matsunaga, Jorn Kalinowski, Haruko Takeyama & Jorn Piel.

Nature 6 February 2014 vol 506 p58-62.

Page 57: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Sponge: Theonella swinhoei Endotheonella sp.

Page 58: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Mycorrhiza-mediated competition between plants and decomposers drives

soil carbon storage

Colin Averill, Benjamin L. Turner & Adrien C. Finzi.

Nature 23 January 2014 vol 506 p543-545.

Page 59: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.
Page 60: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Bacterial Vesicles in Marine Ecosystems

Steven J. Biller, Florence Schubotz, Sara E. Roggensack, Anne W. Thompson, Roger E.

Summons, Sallie W. Chisholm.

Science 10 January 2014 vol 343 p183-186.

Page 61: A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria Stephanie K. Aoki 1, Elie J. Diner 2, Claire t’Kint de Roodenbeke.

Multipurpose vesicles.Biller et al. show that Prochlorococcus produce vesicles that may play functional roles in defending against viral attack, interactions between heterotrophs and

Prochlorococcus, and horizontal gene transfer.

D Scanlan Science 2014;343:143-144

Published by AAAS