A case-control association study of K121Q and G/T Variants in ENPP1 and TCF7L2 gene with type 2...

1
POSTER PRESENTATION Open Access A case-control association study of K121Q and G/T Variants in ENPP1 and TCF7L2 gene with type 2 diabetes mellitus in North Indian Punjabi Population Basanti Barna * , Badaruddoza, Kawaljit Matharoo, Amarjeet Singh Bhanwer From International Conference on Human Genetics and 39th Annual Meeting of the Indian Society of Human Genetics (ISHG) Ahmadabad, India. 23-25 January 2013 Background The K121Q and G/T polymorphism of the ENPP1 and TCF7L2 genes respectively plays a significant role and found to be associated with increased risk of T2DM in many worldwide populations. However, a very few stu- dies have been done for this association in North Indian Punjabi populations. In the present cross section study K121Q polymorphism of ENPP1 gene and G/T poly- morphism of TCF7L2 gene were analysed to determine the association of these genes with type 2 diabetic North Indian Punjabi subjects. Materials and methods A total of 450 participants consisting of 239 T2DM and 211 healthy subjects were recruited for this study. Genomic DNA was amplified by PCR-RFLP method. Anthropo- metric and physiometric variables such as height, weight, Body Mass Index (BMI), Waist hip ratio (WHR), Waist circumference (WC), Hip circumference (HC), biceps skinfold, triceps skinfold, SBP, DBP, MBP, Pulse rate and pulse pressure were measured using standard protocol. The Chi-square analyses were used to test the significance difference in genotype, allele frequencies and Hardy- Weinberg equilibrium deviation. Associations of genotypes with T2DM and its corresponding Pvalues were calculated using Web-Assotest program. Results The results revealed that anthropometric and clinical characteristics such as WHR, fasting and random glucose levels, SBP, DBP, pulse rate and pulse pressure have significant (p<0.001) differences between T2DM and control subjects. However, none of the anthropometric and clinical characteristics have found significant differ- ence with respect to their genotypic distributions for both of genes except DBP for ENPP1 K121Q polymorphism. Conclusions The association analysis of the present results showed K121Q variant of ENPP1 gene G/T variant of TCF7L2 gene have significant association with type 2 diabetes with dominant and recessive model of action respec- tively in North Indian Punjabi populations. Published: 21 January 2014 doi:10.1186/1755-8166-7-S1-P115 Cite this article as: Barna et al.: A case-control association study of K121Q and G/T Variants in ENPP1 and TCF7L2 gene with type 2 diabetes mellitus in North Indian Punjabi Population. Molecular Cytogenetics 2014 7(Suppl 1):P115. Department of Human Genetics, Guru Nanak Dev University, Amritsar- 143005, Punjab, India Barna et al. Molecular Cytogenetics 2014, 7(Suppl 1):P115 http://www.molecularcytogenetics.org/content/7/S1/P115 © 2014 Barna et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http:// creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Transcript of A case-control association study of K121Q and G/T Variants in ENPP1 and TCF7L2 gene with type 2...

POSTER PRESENTATION Open Access

A case-control association study of K121Q andG/T Variants in ENPP1 and TCF7L2 gene withtype 2 diabetes mellitus in North Indian PunjabiPopulationBasanti Barna*, Badaruddoza, Kawaljit Matharoo, Amarjeet Singh Bhanwer

From International Conference on Human Genetics and 39th Annual Meeting of the Indian Society ofHuman Genetics (ISHG)Ahmadabad, India. 23-25 January 2013

BackgroundThe K121Q and G/T polymorphism of the ENPP1 andTCF7L2 genes respectively plays a significant role andfound to be associated with increased risk of T2DM inmany worldwide populations. However, a very few stu-dies have been done for this association in North IndianPunjabi populations. In the present cross section studyK121Q polymorphism of ENPP1 gene and G/T poly-morphism of TCF7L2 gene were analysed to determinethe association of these genes with type 2 diabeticNorth Indian Punjabi subjects.

Materials and methodsA total of 450 participants consisting of 239 T2DM and211 healthy subjects were recruited for this study. GenomicDNA was amplified by PCR-RFLP method. Anthropo-metric and physiometric variables such as height, weight,Body Mass Index (BMI), Waist hip ratio (WHR), Waistcircumference (WC), Hip circumference (HC), bicepsskinfold, triceps skinfold, SBP, DBP, MBP, Pulse rate andpulse pressure were measured using standard protocol.The Chi-square analyses were used to test the significancedifference in genotype, allele frequencies and Hardy-Weinberg equilibrium deviation. Associations of genotypeswith T2DM and its corresponding Pvalues were calculatedusing Web-Assotest program.

ResultsThe results revealed that anthropometric and clinicalcharacteristics such as WHR, fasting and random glucoselevels, SBP, DBP, pulse rate and pulse pressure havesignificant (p<0.001) differences between T2DM andcontrol subjects. However, none of the anthropometricand clinical characteristics have found significant differ-ence with respect to their genotypic distributions for bothof genes except DBP for ENPP1 K121Q polymorphism.

ConclusionsThe association analysis of the present results showedK121Q variant of ENPP1 gene G/T variant of TCF7L2gene have significant association with type 2 diabeteswith dominant and recessive model of action respec-tively in North Indian Punjabi populations.

Published: 21 January 2014

doi:10.1186/1755-8166-7-S1-P115Cite this article as: Barna et al.: A case-control association study ofK121Q and G/T Variants in ENPP1 and TCF7L2 gene with type 2diabetes mellitus in North Indian Punjabi Population. MolecularCytogenetics 2014 7(Suppl 1):P115.

Department of Human Genetics, Guru Nanak Dev University, Amritsar-143005, Punjab, India

Barna et al. Molecular Cytogenetics 2014, 7(Suppl 1):P115http://www.molecularcytogenetics.org/content/7/S1/P115

© 2014 Barna et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative CommonsAttribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction inany medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.