6 Mismatch/DOHA 2 Epigenetic versus genetic 7 and diseases ... · of the planet is that -while...
Transcript of 6 Mismatch/DOHA 2 Epigenetic versus genetic 7 and diseases ... · of the planet is that -while...
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo 4
MismatchDOHA 6
7
XX Century Epidemiological
Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of health and diseases the 7 key words
Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
ERNESTO BURGIO ISDE Scientific Committee ECERI - European Cancer and Environment Research Institute
Insulino-resistance
Diabetes
Cardiovascular Diseases
The XXth Century Epidemiological transition
hellip from a prevalence of acute exogenous (infectious and parasitic)
to a prevalence of chronic endogenous diseases (immunological
neurodegenerative neuro-endocrine cardiovascular and neoplastic)
Barker Hypothesis (1989)
(1989)
a b
c
Letrsquos begin by the seventh key word
ENVIRONMENTAL FACTORS gtgt DNA
TIPE I DIABETES
X 10
amp Non-
Communicable
Diseases
The Obesity
and Diabesity Pandemics
For the first time in human history the number of overweight people rivals the number of underweight peoplehellip While the worldrsquos underfed population has slightly declined since 1980 to 11 billion the number of overweight people has surged to 11 billion
Chronic Hunger and Obesity Epidemic Eroding Global Progress
Obesity Trends Among US Adults 1985
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1987
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Insulino-resistance
Diabetes
Cardiovascular Diseases
The XXth Century Epidemiological transition
hellip from a prevalence of acute exogenous (infectious and parasitic)
to a prevalence of chronic endogenous diseases (immunological
neurodegenerative neuro-endocrine cardiovascular and neoplastic)
Barker Hypothesis (1989)
(1989)
a b
c
Letrsquos begin by the seventh key word
ENVIRONMENTAL FACTORS gtgt DNA
TIPE I DIABETES
X 10
amp Non-
Communicable
Diseases
The Obesity
and Diabesity Pandemics
For the first time in human history the number of overweight people rivals the number of underweight peoplehellip While the worldrsquos underfed population has slightly declined since 1980 to 11 billion the number of overweight people has surged to 11 billion
Chronic Hunger and Obesity Epidemic Eroding Global Progress
Obesity Trends Among US Adults 1985
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1987
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
ENVIRONMENTAL FACTORS gtgt DNA
TIPE I DIABETES
X 10
amp Non-
Communicable
Diseases
The Obesity
and Diabesity Pandemics
For the first time in human history the number of overweight people rivals the number of underweight peoplehellip While the worldrsquos underfed population has slightly declined since 1980 to 11 billion the number of overweight people has surged to 11 billion
Chronic Hunger and Obesity Epidemic Eroding Global Progress
Obesity Trends Among US Adults 1985
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1987
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
The Obesity
and Diabesity Pandemics
For the first time in human history the number of overweight people rivals the number of underweight peoplehellip While the worldrsquos underfed population has slightly declined since 1980 to 11 billion the number of overweight people has surged to 11 billion
Chronic Hunger and Obesity Epidemic Eroding Global Progress
Obesity Trends Among US Adults 1985
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1987
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 1985
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1987
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 1987
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 1993
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 1995
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 1997
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 1999
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Obesity Trends Among US Adults 2001
Source Mokdad A H et al J Am Med Assoc 199928216 200128610
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
The Childhood Obesity Epidemic
US DHHS 2001 Hedley et al 2004 Ogden et al 2006 2008
Matthew W Gillman MD SM
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
The main difference between the two large
epidemics of malnutrition even symbolically
opposite concerning half of the inhabitants
of the planet is that
-while malnutrition is the effect
of an economic and political
unbalanced and unfair situation
-the pandemic of obesity and diabesity
advancing all over the planet that could
transform into a kind of tsunami able to
disintegrate the public health systems
of the northern hemisphere is a symptom
of a evolutionary dis-adaptation or a
rapidly progressive misprogramming of
the entire endocrine-metabolic (central
hypothalamic and peripheral) which should
regulate income and energy consumption
induced by environmental and
nutritional dramatic transformations
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Many scientists and researchers claim that Autism is
the fastest-growing developmental disorder in the world
with the prevalence of diagnosis having increased
by 600 per cent over the last 20 years And from
11200 to 190 children in US in the last 30 years
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Such comparisons show large recent increases in rates of autism and autistic
spectrum disorders in both the US and the UK
Reported rates of autism in the US increased from lt 3 per 10000 children in the
1970s to gt 30 per 10000 children in the 1990s a 10-fold increase
In the United Kingdom autism rates rose from lt 10 per 10000 in the 1980s
to roughly 30 per 10000 in the 1990s
Reported rates for the full spectrum of autistic disorders rose from the 5 to 10
per 10000 range to the 50 to 80 per 10000 range in the two countries (1150-200)
Blaxill MF Whats going on The question of time trends in
autism Public Health Rep 2004 119(6)536-51
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
AUTISME (ASD Autism Spectrum Disorders)
bullNew diagnosed cases of autism (incidence) in US
increased from 15580 in 1992 to 163773 in 2003
bull Estimated prevalence 6-7-12 cases1000 children (2012)
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Alzheimer_and_other_dementias_world_map_-_DALY_-_WHO2004_svg
In 1997 the prevalence in the US was 232 million
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Increased amyloid
A-deposition
Accumulation of hyperphosphorylated
microtubule associated protein ldquotanglesrdquo
(LEARn) model early environmental factors such as
exposure to Pb nutritional deficiencies (eg folate or
B12) or oxidative stress alter DNA epigenetically by
reducing the activity of enzymes as DNMTshellip
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Deaths from urban air pollution in 2000 as estimated by the WHO
World Health Report 2002
The WHO estimates that air pollution is responsible
for 3 million premature deaths each year
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
No one likes to talk about a CANCER PANDEMIC But we must
not forget that today practically all over the North of the world
one person out of two is likely to have a cancer
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
Th
ou
sa
nd
s p
er
An
nu
m
0
2000
4000
6000
8000
10000
12000
14000
2002 2005 2010 2015 2020
Less Developed More Developed
the significant increase in the Less Developed Countries amp in young people all over
the world demonstrates the limits of the SMT (necessary link between aging ampCA)
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Cancer incidence in childhood and adolescence - EUROPE ( 1970-1999)
mother
latency
A first draft of the report published on the Lancet in 2004 demonstrates an annual increase of 1-15 for all cancers (with more marked increases in lymphomas soft tissue sarcomas tumors of the nervous systemhellip)
As we may easily argue from the recent project ACCIS (Automated Childhood Cancer Information System) - a comprehensive monitoring conducted by a team of epidemiologists IARC on 63 cancer registries from 19 European countries for a total of over 130 thousand tumors of all types (113 thousand children and 18 thousand teenagers)
Steliarova-Foucher E Stiller C Kaatsch P Berrino F Coebergh JW Lacour B Parkin M Geographical patterns and time trends of cancer incidence and survival among children and adolescents in Europe since the 1970s (the ACCISproject) an epidemiological study Lancet 2004 Dec 11-17364(9451)2097-105
httpwww-depiarcfraccishtm
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Fetal programming
1
5
3
2
Ontogenesis Phylogenesis
Developmental Plasticity
Devo-Evo
4
MismatchDOHA 6
7 XX Century
Epidemiologic Transition
Environment
From Genetics to Epigenetics
Epigenetic versus genetic origins of
health and diseases the 7 key words Evolutionary Medicine
Is DNA a sort of Project inscribed in our cells
At this pointhaving quickly mapped out
the dramatic epidemiological transition
underway we can briefly examine the other
6 key words
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Interphase chromosomes
Mitotic chromosome
Euchromatin
Heterochromatin
revolving
around it and
playing an
important role
in
transferring
information
from outside
to DNA and
in
modulating
the
response to
the extent
that some
scientists
have used
the term
natural
genetic
engineering
The first keyword Epigenetics
Multiple levels of packing are required to fit the DNA into the cell nucleus
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Rudolf Jaenisch Whitehead Institute amp Dept of Biology MIT Cambridge MA
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Nuclear Receptor DNA Response Element
Histone Lysine Acetylation
Histone Deacetylases
Histone Acetyltransferases
Histone Methyltransferases
ATP-dependent Nucleosome Remodeling Complex
Many toxicants cause rapid alterations in gene expression by activating protein kinase signaling
cascades
The resulting rapid defensive alterations in
gene activity require the transmission of a signal directly to the histones
present in the chromatin of stress response genes
within minutes
of exposure the phosphorylation of serine 10 of histone H3
and the acetylation
of lysines 9 andor 14 take place
H3-K9 H3-S10
P
The ldquomeeting-pointrdquo between the information coming from the environment and the information encoded in the DNA (hardware) is the epigenome (software) mimetic molecules (EDCs) and other pollutants or danger-signals induce the epigenome to change
Chromatin itself is the direct target of many toxicants hellip toxicant-induced perturbations in chromatin structure may precipitate adverse effects Forcing genome to change
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
In 1997 the well known molecular biologist R Strohman attempted an oblique attack against the central dogma of molecular biology the deterministic linear uni-directional and encapsulated path from DNA to RNA to proteins to phenotype
We have
wrongly
extended the
linear theory of
the gene to the
ldquorealmrdquo
of the gene
management
but the gene
management is
an entirely
different
process
involving
interactive
cellular
processes that
display an
interactive
complexityhellip
which is
epigenetic in
nature 1
2
3
Towards a Kuhnian Revolution in Biology and Cancer Research
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
httpnewssciencemagorgsciencenow20090421-03html
IN FACT Genes need to be told to switch ldquooffrdquo and ldquoonrdquo bull Genes need to be told how much expression (protein) is required and where bull Genes need to be regulated ndash this regulation is not performed by DNA but by many other controls arranged in a complex network bull DNA has been called the Book of Life by the Human Genome Project scientists but many other biologists consider DNA to be simply a random collection of words from which a meaningful story of life may be assembledhellip bull In order to assemble that meaningful story a living cell uses a second informational system () The key concept here is that these dynamic-epigenetic networks have a life of their own mdashthey follow network-rules not specified by DNA
From directing the fate of stem cells to determining how we grow the genes in our body act in complex networks the whole Genome is a Complex and highly dynamic molecular Network of interacting Genes and non-codifying sequences and proteins
Strohman R April 2001 Beyond genetic determinism hellipGenes Know How to NetworkhellipBUT
Aujourdhui nous savons que le geacutenome est un reacuteseau moleacuteculaire unique complexe et dynamique et quil ya un flux ininterrompu dinformations au sein du geacutenome et entre le geacutenome et lenvironnement
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
DNA double helix (2-nm diameter)
Metaphase chromosome 700 nm
Tight helical fiber (30-nm diameter)
Nucleosome (10-nm diameter)
Histones
ldquoBeads on a stringrdquo
Supercoil (200-nm diameter)
Campbell NE et al (Eds) Biology Concepts amp Connections 4th Edition 2003
Euchromatin
Heterochromatin
Multiple levels of packing are required to fit the DNA into the cell nucleus
Nuclear DNA is normally tightly wrapped around histones
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
The Epigenetic Players
DNA Methylation
Histone modification
Chromatin Remodeling machinery
+
ON OFF
Euchromatin
Heterochromatin
ldquoThe study of heritable changes in gene function that occur without a change in the DNA sequencerdquo
Fraga et al PNAS 2005
1
4
3 2
MicroRNAs
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
DNA methylation
Covalent modification of the DNA is also important for gene silencing human cells Most genes have GC rich areas of DNA in their promoter regions referred to as CpG islands Methylation of the C residues within the CpG islands leads to gene silencing
(highly unstable base)
2
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
The Histone tails are a critical determinant of chromatin structure
1
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
Histone Tails are subject to a variety of covalent modifications
Histone Coderdquo hypothesis modifications of the Histone tails act as marks read by other proteins to control the expression or replication of chromosomal regions
Eg generally Histone Acetylation is associated with transcriptionally active genes Deacetylation is associated with inactive genes (= gene silencing)
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
3
httpwwwgene-quantificationdemicro-rna-1htmlnature
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment
TCDD
Viruses
HERVs
EMF
3
2
1
SYNERGISM
ldquoFLUID EPI-GENOMErdquo
4
We may represent the environment as a continuous stream of information (simple photons individual packages of E = M = Information) or complex (organic molecules viruses etc) interacting with our cells [membrane transmembrane receptors signal transduction proteins nuclear receptors genome (DNA + Epigenome)] forcing them to adapt
The second keyword Environment