Discrete Fractional Calculus and Its Applications to Tumor ...
5.b) Applications to transport in fusion plasmas Fractional … · 2005. 10. 6. · Fractional...
Transcript of 5.b) Applications to transport in fusion plasmas Fractional … · 2005. 10. 6. · Fractional...
Fractional calculus:
basic theory and applications(Part III)
Diego del-Castillo-Negrete
Oak Ridge National LaboratoryFusion Energy Division
P.O. Box 2008, MS 6169
Oak Ridge, TN 37831-6169
phone: (865) 574-1127
FAX: (865) 576-7926
e-mail: [email protected]
Lectures presented at the
Institute of Mathematics
UNAM. August 2005
Mexico, City. Mexico
5.b) Applications to transport in
fusion plasmas
Here we present phenomenological models of plasma transport based on
the use of fractional diffusion operators. In particular, we extend the
fractional diffusion models discussed before, by incorporating finite-size
domain effects, boundary conditions, sources, spatially dependent
diffusivities, and general asymmetric fractional operators. These additions
are critical in order to order to go beyond tracers transport calculations.
We show that the extended fractional model is able to reproduce within a
unified framework some of the phenomenology of non-local, non-
diffusive transport processes observed in fusion plasmas, including
anomalous confinement time scaling, “up-hill” transport, pinch effects,
and on-axis peaking with off-axis fuelling. The discussion presented here
is based on [del-Castillo-Negrete-etal,2005a] and [del-Castillo-Negrete-
etal,2005b] where further details can be found.
Beyond the standard diffusive transport paradigm
•Experimental and theoretical evidence suggests that transport in
fusion plasmas deviates from the diffusion paradigm:
!tT = !
x" x,t( )!
xT[ ] + S(x, t)
•Anomalous confinement time scaling
• Fast propagation and non-local transport phenomena
• Inward transport observed in off-axis fueling experiments
•To overcome the limitations of the diffusion paradigm, we haveproposed transport models based on fractional derivative operatorsthat incorporate in a unified way non-locality, memory effects, andnon-diffusive scaling.
Examples:
Towards an effective transport model for non-diffusive
turbulent transport
!
dr r
dt= ˜ V =
1
B2" ˜ # $
r B
! P
! t+ ˜ V " #P = 0
•Individual tracers follow the turbulent field
•The distribution of tracers P evolves according to
•The idea is to construct a model that “encapsulates”
the complexity of the turbulence field in an
effective flux !, and reproduces the observed pdf
homogeneous
isotropic
turbulence! = "# $
xP
! P
! t="
! #
! x
Gaussian
closures
diffusive
transport
transport in pressure driven
plasma turbulence
˜ V
Non-Gaussian
distributionsP
x
!" #$=%
Riemann-Liouville derivatives
!
aDx
" # =1
$(n %")
& n
& xn# u( )
x % u( )"%n+1
du
a
x
'Left derivative
Right derivative
!
n = ["]+1
a bx
!
xDb
" # =$1( )
n
%(n $")
& n
& xn# u( )
u $ x( )"$n+1
du
x
b
'
["]=integral part of "
Some limitations of the RL definition
!
L0Dt
" #[ ] = s" ˆ # (s) $ sk
0Dt
"$k$1#[ ]t= 0
k= 0
n$1
%
Although a well-defined mathematical object, the Riemman-Liouville
definition of the fractional derivative has some problems when it comes
to apply it in physical problems. In particular:
!
limx"a a
Dx
# $ =%
unless
!
" (k )(a) = 0!
aDx
"A =
A
# 1$"( )
1
x $ a( )"
The derivative of a
constant is not zero
This might be an issue when
using RL operators for
writing evolution equations
The RL derivative
is in general singular
at the lower limit
This might be an issue
when applying boundary
conditions
The Laplace
transform
of the RL
derivative
depends on
the fractional
derivative at zero
This might be an
Issue when solving
Initial value problems
Behavior near the lower terminal
!
"(x) =" (k )(a)
k!k= 0
#
$ x % a( )kLet
!
aDx
" # =# (k )(a)
k!k= 0
$
% aDx
"x & a( )
k&"
!
aDx
"x # a( )
k
=$ k +1( )
$ k +1#"( )x # a( )
k#"
using
!
aDx
" # = # (k )(a)x $ a( )
k$"
% k +1$"( )k= 0
&
'
!
limx"a a
Dx
# $ = limx"a
$ (k )(a)
% k +1&#( )k= 0
m&1
'1
x & a( )#&k
!
limx"a a
Dx
# $ =% unless
!
" (k )(a) = 0
!
k =1,Lm "1!
m "1#$ < m
Caputo fractional derivativeThese problems can be resolved by defining the fractional operators in the
Caputo sense. Consider the case
!
aDx
" # $#(a)
%(1$")
1
(x $")"$
#'(a)
%(2 $")
1
(x $")"$1=
# (k+2)(a) x $ a( )
k+2$"
% k + 3$"( )k= 0
&
'
regular termssingular terms
!
aDx
" #(x) $#(a) $# (1)(a)[ ] =# (k+2)
(a) x $ a( )k+2$"
% k + 3$"( )k= 0
&
'
!
0
CDx
"# =aDx
" #(x) $#(a) $# (1)(a)[ ]
!
1<" < 2
Define the Caputo
derivative by subtracting
the singular terms
!
" " # (u)
x $ u( )%$1
du
a
x
& =# (k+2)
(a)
k!
x $ a( )k
x $ u( )%$1
a
x
&k= 0
'
( duusing
!
a
CDx
" # =1
$(2 %")
& & # (u)
x % u( )"%1
du
a
x
'
!
a
CDx
" # =1
$(n %")
&u
n#
x % u( )"%n+1
du
a
x
'In general
!
x
CDb
" # =($1)n
%(n $")
&u
n#
x $ u( )"$n+1
du
a
x
'
!
L0Dt
" #[ ] = s" ˆ # (s) $ sk
0# ("$k$1)[ ]
t= 0k= 0
n$1
%
!
limx"a a
Dx
# $ = 0
!
a
CDx
"A = 0and as expected:
Note that in an infinite domain
!
"#
CDx
$ % = "#Dx
$ %
!
x
CD"
# $ =xD"
# $
Nonlocal transport model
!
"T
" t=#
"
" xq
l+ qr + qG[ ] + P(x, t)
!
ql
= " l 2 "#( )$ l 0Dx
#"1T
!
qr = r 2 "#( )$ r xD1#"1
T
!
qG = " #G $x T
!
0Dx
"#1T =
1
$ 3#"( )x # y( )
2#"% % T dy
0
x
&
!
x D1
"#1T =
1
$ 3#"( )y # x( )
2#"% % T dy
x
1
&
Diffusive flux
Left fractional flux
Right fractional flux
Regularized finite-size left derivative
Regularized finite-size right derivative
10 x!
qr
!
qlNonlocal fluxes
Nonlocal transport model
!
"T
" t=#
"
" xq
l+ qr + qG[ ] + P(x, t)
!
ql
= " l 2 "#( )$ l 0Dx
#"1T
!
qr = r 2 "#( )$ r xD1#"1
T
!
qG = " #G $x T
!
x " 0,1( )
!
" T (0) = T(1) = 0
Finite size
domain
Boundary conditions
Diffusive flux
10
“core”
!
"G
Diffusive
transport
Non-diffusive
transport
!
"G," l ,"g
!
ql (0) + qr (0) + qG (0) = 0
Nondiffusive
fluxes
Local and non-local transport
!t" + !
xQ = 0 Q = !D "
x#
Local
diffusive
transport
!L(x) =
1
2L! x + s( ) ds
L
"
!t" = D!
x
2" = 6D
"L# "
L2
as L! 0
x
#2L
L=“radius of influence”
Q (x,t) = ! D G(x ! x' ) " x' #(x' ,t) dx'$
Non-local
diffusive
transport
Perturbative transport experiments have shown evidence of
non-local diffusion in fusion plasmas
Nonlocal transport
!(x, t) = dx' P x " x' ;t( )"#
#
$ !(x' ,t = 0)
!(x' ,t = 0)P(x ! x' ,t)
x'
!(x' ,t = 0)P(x ! x' ,t)
x'
local transport nonlocal transport
!(x, t) " 0 !(x, t) " 0
Due to the algebraic tail of the propagator, fractional diffusion
leads to nonlocal transport
limx!"
P ~ x#( 1+$)lim
x!"
P ~ e# x 2
T (r = a)
Nonlocal transport
Edge temperature rise
Fractional
diffusion
Gaussian
diffusion
Nonlocal transport and global diffusive coupling
!x
"# = lim
h$ 0
%h
"#
h"
! h
" #(x) = $1( )j "
j
%
& ' ( ) j= 0
N
* # x $ j h( )
! x"#k $
%h
"#( )
k
h" =
1
h" wj
"
j= 0
k
& #k ' j
w0
!=1 wj
!= 1 "
! +1
j
#
$ % &
' wj"1
!
Grunwald-Letnikov definition
Finite difference
approximation
Global coupling
coefficients
For " =1 and 2 usual nearest neighbor coupling of Laplacian operator
For 1 < " < 2 fractional diffusion implies global coupling
Steady state and anomalous confinement time scaling
Uniform heating On axis heating
Blue "=2
Green " =1.75
Red " =1.5
Black " =1.25
!
" =T dx
0
L
#P dx
0
L
#
!
T = P0
L"
#l
$
% &
'
( )
1
* " +1( )1+
x
L
$
% & '
( ) ",
- .
/
0 1
Steady state solution
!
" =#
$ 2 +#( )
L#
%l
Confinement time
Anomalous scaling
!
"r
= 0
"l# 0
1 < ! < 2
Confinement time scaling
!
~L
L*
"
# $
%
& '
2
!
~L
L*
"
# $
%
& '
2 !
~L
L*
"
# $
%
& '
(
!
~L
L*
"
# $
%
& '
2!
~L
L*
"
# $
%
& '
(
!
T*
="d
#
"a
2
$
% &
'
( )
1
2*#
!
L*
="d
"a
#
$ %
&
' (
1
2)*
!
!
L = Domain size
Standard diffusivity
!
"d
=
!
"a
= Anomalous diffusivity
!
" = Confinement time Diffusion +
Right fractional
Diffusion +
Symmetric fractional
Diffusion +
Left fractional
“Up-hill” transport and pinch velocity
Gaussian
Flux
Fractional
Flux
!
r > 0
l = 0
Standard diffusion Fractional diffusion
Up-hill
Transport
zone
!
qG = " #G $x T
!
qr = r xD1"#1
T
Fractional flux asymmetry and pinch velocity
Flux
!
r > l
Symmetric fractional
diffusionAsymmetric fractional
diffusion
!
r = l
Right flux
Left flux
Right flux
Left flux!
qr
!
qr
!
ql
!
ql
“Cold-pulse” fast propagation
Standard diffusion Fractional diffusion
x x
tim
e
tim
e
Steady state
Pulse
Off-axis heating
Flux Flux
Standard diffusion Fractional diffusion
!
"R
!
qG
!
qR
!
qT = qG + qR
!
qG
5.c) Application to reaction-
diffusion systems
Here we discuss the role of fractional diffusion in reaction-diffusion
systems. In particular, we present a numerical and analytical study of
front propagation in the fractional Fisher-Kolmogorov equation. The
discussion presented here is based on [del-Castillo-Negrete-etal,2003]
where further details can be found.
Reaction diffusion models of front dynamics
( )!!"!#$!$ %+= 12
xt
Fisher-Kolmogorov equation
diffusion reaction
! = 0
! =1
!"2=c
c
unstable
stable
•Plasma physics
•Model of genes dynamics
•Model of logistic population growth with dispersion
•Other applications include combustion and chemistry.
The fractional Fisher-Kolmogorov equation
( )( )!
"#
#"###$
=x
xx dyyx
yD
1
2
)2(
1%
% &'
%&
1 < ! < 2( )!!"!#!$ % &+= '& 1xtD
The asymmetry in the fractional derivative leads to an asymmetry in the fronts
Self-similar dynamics, exponential
tails, constant front velocityQuasi-self-similar dynamics,
algebraic tails, front acceleration
“left moving” “right moving”
! = 1.25
Asymmetric front dynamics
!(x, 0) =1
21 + tanh
x " x02W
# $
% &
'
( ) *
+ ,
x
!
Exponential decaying
constant speed frontsAlgebraic decaying
accelerated fronts
x
!
!(x, 0) = 1"1
21 + tanh
x " x02W
# $
% &
'
( ) *
+ ,
! = 1.25
Asymmetric front dynamics
!(x, 0) =1
21 + tanh
x " x02W
# $
% &
'
( ) *
+ ,
Exponential decaying
constant speed frontsAlgebraic decaying
accelerated fronts
!(x, 0) = 1"1
21 + tanh
x " x02W
# $
% &
'
( ) *
+ ,
x
t
x
t
Leading edge calculation for algebraic fronts
At large x, !"!#!$ %+=
xtD
!(x, 0) =1 x < 0
e"#x
x > 0
$ % &
! <<1 implies
!!"
#
"#
#+#
#
#
+=$
$
$
%
$&
%
$'%(&( '''')
/1
/1
/1
)(
,1
)(
,1
)( )()(
tx
t
tx
ttxdLedLee
( )!!"!#!$ % &+= '& 1xtD
),( txet!" #
= !"!# $
xtD=
( ) ( )[ ] !!"#!#$
$ dtxLtx/1
01,),( %= &'
'%
%
1)/(for~~)( /1)1(
,1 >>! "+"
"
###
# $%&& txxetLt
Right moving algebraic decaying,
accelerated front
c ~ e! t /"
! ~ x"#
Right moving algebraic decaying,
accelerated front
! ~ x"#e$ t
Leading edge calculation for exponential fronts
At large x,
!t" = D !
x
#" + $ "
!(x, 0) =e"x
x < 0
1 x > 0
# $ %
! <<1 implies
In this case the calculation is simple because the front is self-similar
and retains the exponential decaying shape.
!x
"e#x= #
"e#xUsing the fact that we conclude
c =
! "
! #1
$ %
& '
! # 1( )D
"
(
) * +
, -
1/!
if 1/ . /Wc
"
.+
D
.1#!if 1/ . 0Wc
1
2
3 3
4
3 3
Left moving exponential decaying,
constant velocity front
c =! "
! #1
$ %
& '
! # 1( )D
"
(
) * +
, -
1/!Fractional generalization of
Kolmogorov front speed.
6. Some references
Fractional calculus:
•[Samko-et-al-1993] S.G. Samko, A.A. Kilvas and O.I. Maritchev,
Fractional Integrals and Derivatives. (Gordon and Breach Science
Publishers, 1993).
•[Podlunbny-1999] I. Podlunbny, Fractional differential
equations.(Academic Press, San Diego, 1999).
Random walks and fractional calculus
•[Montroll-Weiss-1965] E.W. Montroll and G.H. Weiss, Random
Walks on Lattices. II. J. Math. Phys. 6, 167 (1965).
•[Montroll - Schlesinger-1984] E.W. Montroll and M.F. Schlesinger,
The wonderfull world of random walks. In Nonequilibrium Phenomena
II. From Stochastics to Hydrodynamics, edited by J.L. Lebowitz and
E.W. Montroll. (Elsevier, Amsterdam, 1984)
•[Metzler-Klafter-2000] R. Metzler and J. Klafter, The random walk´s
guide to anomalous diffusion: a fractional dynamics approach. Physics
Reports, 339, December 2000.
Stochastic processes:
•[Paul- Baschnagel-1999] W. Paul, and J. Baschnagel, Stochastic
processes: from physics to finance (Springer –Verlag, Berlin 1999).
•[Bouchard-Georges-1990] J.P. Bouchard, A. Georges, Anomalous
diffusion in disorder media. Physics Reports 195 127 (1990).
Anomalous diffusion in fluids and plasmas
•[del-Castillo-Negrete-1998] D. Del-Castillo-Negrete, Asymmetric
transport and non-Gaussian statistics in vortices in shear. Physics of
Fluids 10, 576 (1998).
•[del-Castillo-Negrete-2000] D. Del-Castillo-Negrete, Chaotic
transport in zonal flows in analogous geophysical and plasma systems.
Physics of Plasmas 7, 1702 (2000).
Fractional diffusion models of transport in plasmas
•[del-Castillo-Negrete-etal-2004] D. Del-Castillo-Negrete, B.A.
Carreras and V.E. Lynch, Fractional diffusion in plasma turbulence.
Physics of Plasmas 11, 3854 (2004).
•[del-Castillo-Negrete-etal-2005] D. Del-Castillo-Negrete, B.A.
Carreras and V.E. Lynch, Nondiffusive transport in plasma turbulence:
a fractional diffusion approach. Physical Review Letters 94, 065003
(2005).
•[del-Castillo-Negrete-2005a] D. Del-Castillo-Negrete, Fractional
diffusion models of transport in magnetically confined plasmas.
Proceedings of the 32nd European Physical Society, Plasma Physics
Conference. Tarragona Spain (2005).
•[del-Castillo-Negrete-2005b] D. Del-Castillo-Negrete, Fractional
diffusion models of nonlocal transport in magnetically confined
plasmas. Preprint (2005).
Fractional reaction-diffusion systems
•[del-Castillo-Negrete-etal-2003] D. Del-Castillo-Negrete, B.A.
Carreras and V.E. Lynch, Front dynamics in reaction-diffusion systems
with Levy flights: a fractional diffusion approach. Physical Review
Letters 91, 018302-1 (2003).
Numerical integration of fractional equations
•[Lynch-etal-2003] V.E. Lynch, B.A. Carreras, D. Del-Castillo-
Negrete, K.M. Ferrerira-Mejias and H.R. Hicks.Numerical methods for
the solution of partial differential equations of fractional order. Journal
of Computational Physics. 192, 406-421 (2003).
•[del-Castillo-Negrete-2005c] D. Del-Castillo-Negrete, Finite
difference methods for the numerical integration of fractional partial
differential equations. Preprint (2005).