WHO estimates, 450 million cases of pneumonia are recorded ...
450 million years old - bpums.ac.ir
Transcript of 450 million years old - bpums.ac.ir
Land fossils are about : 450 million years old
The oldest known marine fossils are about : 3:5 billion
years
More than 40 000 different kinds of species are present in the marine environment
Marine Ecosystems
More than 80% of living organisms on earth are found in the aquatic ecosystem.
Marine environment offers a diversity
of habitats which is reflected in the
biological diversity that is found in
marine organisms.
The oceans cover 70% of the earth’s
surface
Any technological application that uses biological systems, living organisms, or derivatives thereof, to
make or modify products or processes for specific use.
Food and Agricultural Organization (FAO)
The application of scientific and engineering principles to the processing of materials by marine biological agents
provide good and services
Examples of products and services developed by technological applications using marine bioresources
Important marine sources in the research are microorganisms, algae, and sponges
It is notable that the major international effort involved 2700 researchers, about
44% from USA and Canada,
31% from Europe,
25% from the rest of the world, notably Australia, New Zealand, Japan, China, South Africa, India, Indonesia, and
Brazil
Countries and their marine biotechnology research priorities
Total number of new compounds isolated from different types of marine sources, 2001–2010
The largest structures made by living creatures
They contain an enormous diversity of organisms,
The economic value of coral reefs has been estimated to be US$375 billion per year2
(largely derived from fishing, tourism and coastal protection activities)
of two layers of cells, the epidermis and gastrodermis, covered by a surface mucus layer and connected to
a large, porous calcium carbonate skeleton
Very simple body
many materials previously isolated from
macroorganisms, such as sponges and
tunicates, are in fact, metabolic products
of associated microorganisms
The mucus layer, skeleton and tissues of healthy corals all contain large populations
of:
I. eukaryotic algae,
II. bacteria
III. and archaea.
mucus layerCorals
The role of microorganism in coral
These microorganisms confer benefits to their host by various mechanisms, including
I. photosynthesis,
II. nitrogen fixation,
III. provision of nutrients
IV. infection prevention.
The role of microorganism in coral
The apparent uniformity of the symbionts isolated from various hosts led to the assumption that all symbiotic
dinoflagellates belonged to a single species Symbiodinium microadriaticum
Molecular evidence has since demonstrated that the
genus Symbiodinium is diverse, containing multiple taxa
Each coral has its own symbiotic micro-algae
The high concentration of oxygen results in formation of oxygen radicals which provide protection against
infection
The energy requirements of their hosts by transferring photosynthetically fixed carbon to the coral
The production of large amounts of molecular oxygen that allows for efficient respiration by the coral
A pathogen of Symbiodinium in the coral
required SOD to initiate infection
Symbiodinium
Mycosporines localize to the coral mucus and are hypothesized to protect the holobiont against UV radiation and
to serve as antioxidants
Produce Mycosporines and Mycosporine-like amino acids (MAAs) :
low-molecular-weight water-soluble molecules absorbing UV radiation in the wavelength range 310-365 nm
Symbiodinium and Microbial communities
Under both stressed and non-stressed conditions supporting the hypothesis that unknown factors associated with
different Symbiodinium genotypes influence the coral microbiota composition.
Coral microbial communities have been shown to differ based on the clade of Symbiodinium present in
coral species
Healthy and bleached corals can be modeled in the laboratory by studying the Symbiodinium symbiosis.
Bacteria satisfy 50% of the total nitrogen needs of the coral
Bacteria could be crucial for the survival of the coral when it loses its endosymbiotic algae
Bacteria provide organic compounds (produced by photosynthesis) to the coral tissue
Surface mucus layer
Coral tissue (including the gastrodermal cavity)
Calcium carbonate skeleton, each of which harbour a distinct bacterial population
The coral bacterial community differs from seawater surrounding the coral suggesting the association between
the coral and its microbiota is specific
The coral probiotic hypothesis
The ability of coral to adapt to environmental stresses
temperature conditions
infection by specific pathogens
A dynamic relationship exists between symbiotic microorganisms and corals at different environmental conditions
transfer of symbionts from parent to offspring
The transmission of symbionts in corals
Vertical transmission
Horizontal transmission uptake of symbionts from the environment
Microbial associations over evolutionary time scales are likely to contribute to genome differentiation in both the host and
its associated microbial partners
If a bacterial symbiont is both vertically transmitted and an endosymbiont, its genome will be more likely to be reduced in
size relative to other bacterial that have free-living stages.
The coral-associated bacterial genomes are of a similar size as their non-coral associated relatives
For example : coral-associated genomes from Proteobacteria is similar with free-living Proteobacteria
Data on genome size reduction come from studies on insect endosymbiosis
Observation
Bacterial genome evolution in the holobiont
Environmental stress factors
Climate change,
water pollution
over-fishing
Stress resistance: the coral probiotic hypothesis
corals contain an innate immunity system,
they do not produce antibodies
lack an adaptive immunity system
Like other invertebrates, corals possess innate or natural immunity include
I. Physical barriers, such as the epidermis and mucus (the mucus surrounds the coral and is shed periodically
removing trapped microorganisms
II. Cellular components (phagocytic cells) that can engulf and destroy microorganisms on contact
III. Soluble factors, including organic acids and antimicrobial products
coral-associated bacteria inhibit pathogen invasion and actively
Innate immunity
Evidence for metabolic complementation
Association between diazotrophic bacteria and coral
Coral Acropora digitifera lacked a key enzyme that
Cysteinethione β synthase (CBS) is missing also from two other Acropora species but it has been reported in many corals
For instance
Nitrogen fixation
Oligotrophic habitat of corals Makes metabolic complementation desirable
synthesizes the essential amino acid cysteine from homocysteine or serine
Microbial interactions can play a role at each of the stages in a coral’s life cycle
Scleractinian corals reproduce
I. asexually through budding and fragmentation II. sexually by gamete spawning
How coral microbe interactions facilitate the coral life cycle
How coral microbe interactions facilitate the coral life cycle
(1) fertilization and spawning – fertilization of gametes and formation of a motile pelagic planula larva
How coral microbe interactions facilitate the coral life cycle
Mucus layer surrounding the gametes of spawning corals as media for transfer of symbionts (Symbiodinium
and bacterial species) from parent colony to larvae after gamete release
(1) fertilization and spawning
How coral microbe interactions facilitate the coral life cycle
Antimicrobial activity of resident microbes may serve a protective function for coral spawn or newly hatched larvae
(2) Settlement and metamorphosis – the selection of appropriate settlement substrate by the free-swimming planula and
metamorphosis into polyp
How coral microbe interactions facilitate the coral life cycle
Bacteria have a fundamental role in moderating metamorphosis and settlement of larvae in the marine environment
This event may be triggered by diffusible or potentially contact-mediated signals
Mechanism behind induction of coral metamorphosis by various Pseudoalteromonas strains led to isolation of the
inducing Compound tetrabromopyrrole (TBP)
Certain populations of bacteria may also deter coral settlement through diffusible signals
larvae avoid settling adjacent to benthic cyanobacteria hypothesized to produce toxic secondary metabolites
Coral colony formation
Coral must overcome competition with other benthic organisms to grow and form adult colony.
Bacteria help coral colonies versus competitors such as macro- and turf algae
High mortality (up to 100%) of coral nubbins grown with algal competitors
Antibacterial compound ampicillin rather than algal toxins, mediated the inhibitory effects
Coral colony formation
organic carbon by primary producers may enrich for heterotrophic bacteria including pathogens and opportunists
that may impact the survival of coral
How do corals influence the composition and/or functions of the associated microbiota?
To effectively structure the associated microbiota, hosts must either
(i) be able to detect specific micro-organism associated molecular patterns (MAMPs)
(ii) excrete broadly active antimicrobial compounds to select against general environmental organisms,
(iii) release chemical cues and/or nutrients attract micro-organisms with potentially beneficial functions,
(iv) attract and maintain keystone microbes which is resistant to invasions by potential pathogens
Strong evidence for scenarios (i) and (ii) would indicate that the composition of the associated microbiota is more
important,
scenarios (iii) and (iv) would argue that the function, rather than composition of the microbiota is more
consequential to the holobiont’s health and stability.
How do corals influence the composition and/or functions of the associated microbiota?
(i) be able to detect specific micro-organism associated molecular patterns (MAMPs)
I. Their surface structures (lipopolysaccharide, peptidoglycan, flagellin, etc.)
II. Genomes of Cnidarians encode homologues of proteins capable of recognizing micro-organisms and their
associated molecular patterns
(ii) excrete broadly active antimicrobial compounds to select against general environmental organisms,
For example:
Antimicrobial peptide Damicornin was most active against a fungus and some (but not all) Gram-positive
bacteria, and had no effect on the four tested vibrios
(iii) release chemical cues and/or nutrients that would attract micro-organisms
Organic extracts of the coral Siderastrea siderea showed selective antimicrobial activity against two of four strains
of Gram-positive bacteria isolated from coral surfaces
Exposure of corals to pathogens also induces production of enzymes with predicted defence functions:
Phenoloxidase,
Peroxidases
Chitinases,
Melanin
Coral microbiota can change based on environmental conditions
Contact between corals and macroalgae can lead to changes in microbial assemblages in corals
Macroalgae may affect coral-associated microbes by
(i) smothering coral tissues or creating persistent hypoxic conditions
(ii) poisoning any member of the coral holobiont via algal secondary metabolites
(iii) Harbouring pathogenic bacteria
(iv) inhibiting or stimulating microbial growth by releasing dissolved organic carbon or antibiotic secondary metabolites
The major bacteria
Nitrogen-fixing
Bioluminescent
Gliding myxobacteria
Diversity of marine bacteria associated with Soft Coral
38 %
Gamma
proteabacteria
17%
Alpha
proteabacteria
13 %
CFP Group*
6%
Cyanobacteria
CFP Group*: includes: cytophagea,flavobacter/flexibacter, bacteriodes
Microbial Community Associated with the Zoanthid Palythoa australiae from the South China Sea
Phylogenetic tree of identified
isolates associated with the soft
coral Sarcophyton glaucum
Marine actinobacteria associated with marine organisms
Large number of new compounds with pharmacological potentials from the actinobacteria associated with the
marine organisms
polyketides,
isoprenoids,
phenazines,
peptides,
indolocarbazoles,
and sterols
Distribution and abundance of actinobacteria associated with the marine organisms
Natural products derived from the marine organism-associated actinobacteria
Distribution of natural product-producing actinobacteria associated with the marine organisms
All these natural products were isolated from the
genera belonging to Actinomycetales
Polyketide Synthases : PKSs are a family of large, modular enzymes that produce PKs, a large class of secondary metabolites,
in bacteria, fungi, plants and vertebrate lineages
PKSs found in I. actinobacteria,
II. mycobacteria,
III. pseudomonas
IV. cyanobacteria
Polyketide synthases are a class of enzymes that are involved in the biosynthesis of secondary metabolites
(erythromycin, rapamycin, tetracycline, lovastatin, and resveratrol)
Non-Ribosomal Peptide Synthetase
NRPs are peptide-derived molecules not produced by the ribosome but synthesised by assembly-line enzymes (NRPSs)
whose function is similar to that of PKSs
only eight approved drugs of bacterial orgin
12 NPs (or derivatives) in different clinical phases
In 2013, 1163 new marine compounds BUT
.و کشت اکتینوباکترهای دریاجداسازی تکنیک های
why more than 70 bacterial phyla have no cultured representatives
Many organisms require special growth parameters (physical and chemical) that are hard or even impossible to
reproduce in the laboratory
1% of coral bacteria can presently be cultured
Our knowledge is still poor about specific, natural nutrients and growth factors required for their cultivation.
I. Effects of uncommon inorganic elements, such as lithium, silicon, etc., which are also abundant in marine
sediments.
I. Common media constituents such as simple sugars, peptone
replaced with complex carbon sources such as chitin, sulfated polysaccharides, and marine proteins
Marine metagenomics, a valuable tool for enzymes and bioactive compounds discovery
Using metagenomics technique to access the uncultured majority of microbial communities
The enormous potential in diversity of the marine life is still not fully exploited due to the difficulty in culturing
many of the microorganisms under laboratory conditions.
Metagenomics
Using database sequences as a starting point,
I. we can clone biosynthetic genes directly from the symbiosis
II. and reconstitute them in a heterologous host for expression and compound production
Culture-free techniques
Metagenomic-based strategies are powerful tools to isolate and identify enzymes with novel biocatalytic activities
from the uncultivable component of microbial communities
Culture-free techniques
I. 16S r DNA library was constracted by isolation of DNA directly from the coral sample,
II. PCR amplification with bacterial-specific primers
III. coloning
I. We can obtain sequence information from ribosomal RNA (rRNA) genes directly from the symbiosis
without cultivation,
II. and design specific oligonucleotide probes from these sequences
Metagenomics may be focused on gene clusters or genes encoding enzymes and on the discovery of biocatalysts
for synthesis and production of secondary metabolites like bioactive compounds
S AVE OUR COR AL