2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab...
Transcript of 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab...
![Page 1: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/1.jpg)
2017 ADC Meeting Induced Pluripotent Stem Cells
October 14, 2017
Mathew Blurton-Jones, PhD UC Irvine ADRC iPS cell core leader
![Page 2: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/2.jpg)
The UCI ADRC iPSC core is tasked with generating and distributing AD, MCI, and Control iPSCs and fibroblasts
Clinical and Education Cores consent and obtain skin samples
ADRC iPS lines
Late-onset AD is ~79% genetic
Do genetic differences shift the function or phenotype of AD
Patient brain cells?
ADRC patient fibroblasts
![Page 3: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/3.jpg)
• 87% consent rate for PBMC reprogramming (84% for fibroblasts).
• Fibroblasts expanded and banked from 117 subjects.
• iPSC lines from 62 subjects made, characterized, and available thus far (3-4 clones/subject, 50 vials/subject banked at P10). • Letters of support and/or feasibility data provided to 12 non-UCI Researchers and 12 UCI researchers. • iPSC core website established to help researchers select appropriate lines: https://stemcells.mind.uci.edu/ • Isogenic TREM2 heterozygous and homozygous knockout lines made and gene corrected lines being generated.
UCI ADRC iPSC core
![Page 4: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/4.jpg)
In collaboration with the DMSC the iPS core website was established to help researchers choose and request lines.
https://stemcells.mind.uci.edu/
![Page 5: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/5.jpg)
An example of a collaborative research project that used UCI ADRC iPSC lines:
This project used 10 ADRC iPSC lines
![Page 6: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/6.jpg)
Many AD risk genes are highly expressed in Microglia
Guerreiro, Brás, and Hardy, Cell 2013
![Page 7: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/7.jpg)
Human iPS lines AD Patient Fibroblasts
Patient-derived Microglia?
?
Can human Microglia be generated from induced pluripotent stem cells (iPSC) to study these AD risk genes?
![Page 8: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/8.jpg)
iPSCs HPCs iPS-Microglia like cells (iMGLs)
Non-adherent dishes + IL34,
+ CSF-1,
+ TGFB1 + CD200 + CX3CL1
Development of fully-defined microglial differentiation approach
1 million iPSCs yields 30-40 million iMGLs
iMGLs CD43+ HPCs iPS cells Hypoxia
FGF2, BMP4,
ActivinA, VEGF
TPO, SCF, Il3,Il6
Abud et. al., Neuron, 2017
Edsel Abud. PhD
97% P2ry12/Trem2+
![Page 9: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/9.jpg)
Whole-transcriptome RNA-seq analysis of iMGLs
With Ricardo Ramirez and Ali Mortazavi (UCI) Luke Healy and Jack Antel, (McGill University)
Abud et. al., Neuron, 2017
![Page 10: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/10.jpg)
Can iMGLs be used to study microglial function?
• Directed Migration • Cytokine production • Phagocytosis of CNS substrates • Interactions with neurons/astrocytes/plaques?
![Page 11: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/11.jpg)
Does Tau or Aβ exposure alter iMGL gene expression?
with Rakez Kayed (U Texas)
Abud et. al., Neuron, 2017
![Page 12: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/12.jpg)
Now using iMGLs to investigate how TREM2 mutations affect microglial migration, gene expression, phagocytosis, energetics, etc.
iPSC lines R47H carriers (n=4) T66M carriers (n=3) WT controls (n>10) Isogenic TREM2 KO (n=2, so far) Isogenic TREM2 repaired lines (screening clones)
![Page 13: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/13.jpg)
• Further publicizing availability of this resource and similar banks at other ADCs.
• Better linking iPSC lines to the wealth of other clinical and genetic data available (NACC/ADGC) for these subjects to help researchers select appropriate lines for study. • Given the power of CRISPR isogenic lines, should we shift our focus and resources to produce more. • Creating a centralized iPS cell repository: NCRAD?
How can we increase collaboration and use of ADC iPS cells?
![Page 14: 2017 ADC Meeting Induced Pluripotent Stem Cells · • Jean-Paul Chadarevian, MS Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD •](https://reader034.fdocuments.in/reader034/viewer/2022042309/5ed652277998195daf29d1fc/html5/thumbnails/14.jpg)
Acknowledgements UCI ADRC and ADRC iPSC Core • Frank LaFerla, PhD • Josh Grill, PhD • Aimee Pierce, MD • Claudia Kawas, MD • Dan Gillen, Ph.D • Dan Hoang, MS • Ed Monuki, MD, PhD • Wayne Poon, PhD • Christina Tu. MS • Jean-Paul Chadarevian, MS
Blurton-Jones Lab (UC Irvine) • Edsel Abud, PhD • Samuel Marsh, PhD • Hayk Davtyan, PhD • Eric Martinez • Amanda McQuade • Jonathan Hasselmann UC Irvine Collaborators • Ricardo Ramirez, PhD • Ali Mortazavi, PhD
UC Riverside • Monica Carson, PhD • Abdullah Madany McGill University • Jack Antel, MD • Luke Healy, PhD
UC Los Angeles • Karen Gylys, PhD
Univ. Texas, Galveston • Rakez Kayed, PhD Univ. College, London • John Hardy, PhD Funding • NIH-P50-AG01657 • NIH-R01-AG048099 • CIRM RT3-07893 • Alz. Assoc. BFG-14-317000