2016 – 2017 G2F Data Update · Introduction & Current Involvement 2016 & 2017 Data Curation...
Transcript of 2016 – 2017 G2F Data Update · Introduction & Current Involvement 2016 & 2017 Data Curation...
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2016– 2017G2FDataUpdateNASERB.ALKHALIFAH
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Overview
Introduction&CurrentInvolvement
2016&2017DataCurationStatus
DataReleaseTimeline&Access
PlantingSeason2018
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IntroductionEducation:
▪ M.S.PlantBreeding(Agronomy)– IowaStateUniversity
▪ B.S.Genetics(LiberalArtsandScientists– IowaStateUniversity
ProfessionalExperience:
▪ G2FProjectCoordinator– UniversityofWisconsin– Madison(Current)
▪ G2FDataScientist– IowaStateUniversity(2016)
▪ FieldResearchAssociate(II)– MonsantoCompany(2014– 2016)
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CurrentInvolvementPhenotypicData:
▪ Plantinglocations&SeedInventory
▪ ExperimentPlanning&Building
▪ SeedLogistics
▪ DataCuration
▪ DataRelease
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CurrentInvolvementCont’dWeatherData:
▪ Maintainingandupdatingdatacurationpipeline.
▪ Weatherdatacuration.
SoilData:
▪ CollatingdatafromWardLaboratories.
Metadata:
▪ Creation,troubleshooting,andmaintenance.
Permissions:
▪ GrantingaccesstogooglesheetsandCyVerse.
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2016&2017DataCurationStatus
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2016DataCurationStatusMetadata:
▪Metadatareceivedfromalllocations.
▪ DataimportedtoPRISM.
SoilSampling:
▪ SoilSamplesreceivedfromalllocations.
▪ DataCollatedandreadyforDOIrelease.
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2016DataCurationStatusCont’dHybridPhenotypicData:
▪ HybridDatareceivedfromalllocations.
▪ DataimportedtoPRISM.
▪ Datareadyforpublicrelease(pending1location).
WeatherData:
▪ Alllocationsreportedweatherdata.
▪ Initialdatacurationcompleted.
▪ Resolvingremainingissues(duplicatetimestampsetc.)
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2017DataCurationStatusMetadata:
▪ 19outof37locationsreportedmetadata(Plotlength,Alleylength,Rowspacing,etc.)
▪ DataimportedtoPRISM.
SoilData:
▪ 28locationsreportedsoilsamples.
▪ Datahasbeencleanedandcompiledintoacsvfile.
▪ Initialpdffilesmaintainedforrelease.
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2017DataCurationStatusCont’dHybridPhenotypicData:
▪ 20locationsprovidedfieldbooks.
▪ DataimportedintoPRISM.
▪ Metadatacombinedforyieldcalculations
WeatherData:
▪ 20locationsreportedweatherdata.
▪ Developingnewcodeforhandlingweatherdata.
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DataReleaseTimelineandAccess
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DataReleaseTimeline
FieldSeason ReleasetoCollaborators(ARK) PublicRelease(DOI)
N FebruaryofN+1 MarchofN+2
2016 Februaryof2017 Marchof2018
2017 Februaryof2018 Marchof2019
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DataAccess
FieldSeason WhereToAccess PublicLinks
2014 http://www.genomes2fields.org/ https://doi.org/10.7946/P2V888
2015 http://www.genomes2fields.org/ https://doi.org/10.7946/P24S31
2016 PersonalizedLink(Feb.2017) Available:Marchof2018
2017 PersonalizedLink(Feb.2018) Available:Marchof2019
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DataAccess
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PlantingSeason2018
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PlantingSeason2018Planning:
▪ 13locationshavebeenconfirmedforplantingseason2018.
▪Masterplanhasbeencreatedfor2018.
▪ SeedfromIsolationsarebeingshelledandwillimportedintoPRISMDatabase.
▪ FirstseedshipmentsprojectedbyFebruary
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GenomesToFieldsSponsors
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✧NaserAlkhalifah(UW)✧MartinBohn(UIUC)✧EdBuckler(ARS)✧DarwinCampbell(ISU)✧IgnacioCiampitti(KSU)✧JamesClohessy(Cornell)✧LiangDong(ISU)✧JodeEdwards(ARS)✧DavidErtl(IACorn)✧SherryFlint-Garcia(ARS)✧JosephGage(UW)✧JackGardiner(ISU)✧FionaGoggin(UnivAR)✧ByronGood(Guelph)✧MikeGore(Cornell)✧ChristopherGraham(SDSU)✧PatricioGrassini(UNL)✧JerryHatfield(ARS)✧BrienHenry(MSU)✧CandyHirsch(UMN)✧JimHolland(ARS)✧ElizabethHood(AR-State)✧DavidHooker(Guelph)
✧JamesSchnable(UNL)✧PatSchnable(ISU)✧BrianScully(ARS)✧RajandeepSekhon(Clemson)✧ManinderSingh(MSU)✧KevinSilverstein(UMN)✧MargaretSmith(Cornell)✧BobSnyder(PSU)✧EdgarSpalding(UW)✧NathanSpringer(UMN)✧SrikantSrinivasan(ISU)✧YiweiSun(ISU)✧KurtThelen(MSU)✧PeterThomison(OSU)✧KellyThorp(ARS)✧MitchTuinstra(Purdue)✧JasonWallace(UGA)✧ReneeWalton(ISU)✧RickWard(UA)✧BillWiddicombe(MSU)✧RodWilliamson(IACorn)✧RandyWisser(UDel)✧WenweiXu(TAMU)✧Cheng-TingYeh(ISU)✧JianmingYu(ISU)
✧DiegoJarquin(UNL)✧ShawnKaeppler(UW)✧JoeKnoll(ARS)✧JudithKolkman(Cornell)✧GregKruger(UNL)✧NickLauter(ARS)✧CarolynLawrence-Dill(ISU)✧LizLee(Guelph)✧ZhizhaiLiu(TAMU)✧NataliadeLeon(UW)✧AlexLipka(UIUC)✧ArgeliaLorence(AR-State)✧AaronLorenz(UMN)✧JonathanLynch(PSU)✧JohnMcKay(CSU)✧NathanMiller(UW)✧SteveMoose(UIUC)✧SethMurray(TAMU)*✧RebeccaNelson(Cornell)✧TorbertRocheford(Purdue)✧OscarRodriguez(UNL)✧CintaRomay(Cornell)✧EmilyRothfusz(UW)
GenomesToFieldsCollaborators
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Questions?