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    Research review paper

    Testing for genetically modied organisms (GMOs): Past, present andfuture perspectives

    Arne Holst-Jensen

    Department of Feed and Food Safety, National Veterinary Institute, Ullevaalsveien 68, P.O. Box 750 Sentrum, 0106 Oslo, Norway

    a b s t r a c ta r t i c l e i n f o

    Available online 27 May 2009

    Keywords:

    Transgenic crops

    Detection

    Identication

    Quantication

    Transformation

    Quality assurance

    High throughput

    Validation

    Unapproved GMO

    Intragenics

    This paper presents an overview of GMO testing methodologies and how these have evolved and may evolve

    in the next decade. Challenges and limitations for the application of the test methods as well as to the

    interpretation of results produced with the methods are highlighted and discussed, bearing in mind the

    various interests and competences of the involved stakeholders. To better understand the suitability and

    limitations of detection methodologies the evolution of transformation processes for creation of GMOs is

    briey reviewed.

    2009 Elsevier Inc. All rights reserved.

    Contents

    1. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10712. Stakeholder roles and responsibilities . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1072

    3. Development and evolution of GMOs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1073

    4. Method development and availability . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1076

    5. Unauthorised GMOs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1077

    6. Future perspectives . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1078

    References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1078

    1. Introduction

    Gene technology as a technology is potentially a short way to

    improving domesticated plants and animals, mainly because it can

    bypass biological barriers for recombination and genetic exchange

    across unrelated species by creating transgenes. However, from a

    societal point of view this technology is seen by many as a derail

    rather than a short way, as many still do not feel that the safety of the

    technology is conclusively demonstrated. Like any other technology,

    the gene technology has a potential for hostile abuse or unsafe use.

    Because of its wide ranging potential, the public perception of the

    technology has also affected the regulation of the technology and the

    testing requirements; to an extent more comparable to medical

    drugs than to any other food related production technology, at least in

    some parts of the world.

    Therst commercial genetically modied (GM) plant (the FlavrSavr

    tomato) was authorised for marketing in 1994 (Food and Drug

    Administration, 1994). As will become evident in the following, it was

    more future oriented than the majority of the currently marketed rst

    generation GM organisms(GMOs) in some ways.The term GMOmay be

    used in a broad sense to include all life forms, but the most common

    application of the term is limited to conne GM plants and animals. In

    the following, GMOs will refer strictly to GM plants because GM animals

    are yet to be commersialised, except for ornamental sh and pets. The

    annual increase in commercial plantings of GMOs has risen with an

    average of approximately 10% over the last decade. In 2007 GMOs

    occupied more than 143 million ha in 23 countries, with soybean, cotton,

    maize and rapeseed (canola) as the dominant crops (James, 2008).

    Regulation of gene technology varies from country to country. A

    few issues are fairly common, however: assessments on a case-by-

    Biotechnology Advances 27 (2009) 10711082

    Tel.: +47 2321 6243; fax: +47 2321 6202.

    E-mail address:[email protected].

    0734-9750/$ see front matter 2009 Elsevier Inc. All rights reserved.

    doi:10.1016/j.biotechadv.2009.05.025

    Contents lists available at ScienceDirect

    Biotechnology Advances

    j o u r n a l h o m e p a g e : w w w. e l s ev i e r. c o m / l o c a t e / b i o t e c h a d v

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    case basis, with focus on safety, a distinction between contained use

    and release into the environment, and a distinction between growing

    and using (e.g. as raw material for food or feed incl. processing). The

    concept of substantial equivalence (to the non-GMO isogenic counter-

    part) is widely adopted as a basis for assessing a GMO ( Schauzu,

    2000). A GMO may become deregulated (e.g. USA), may become

    authorised for limited use, such as imports as food (e.g. the EU), or

    specic products derived from specic GMOs may become authorised

    (e.g. PR China). Tolerance thresholds (e.g. for non-authorised GMOs)or thresholds for labeling are in place in some but not all countries.

    Specic thresholds also vary and labeling thresholds maybe voluntary

    or mandatory. As a consequence, the specic needs for detection,

    identication and quantitation vary signicantly.

    Testing for (detection of) GMOs may serve several purposes.

    Qualitative testing may be used to discriminate between authorised

    and unauthorised material or use of material, to identify safe or

    potentially unsafe material, or for certication of purity of identity

    preserved material. Quantitative testing may be used to control for

    compliance with legal (e.g. for labeling) or contractually agreed thresh-

    olds (e.g. with respect to botanical impurity). Testing may also play a

    role in the safety assessment and risk management of GMOs by

    providing a means of tracing and if necessary retracting the GMO

    material, by providing data from characterisation of the GMO itself

    (see e.g. Collonnier et al.,2005; Hernandez et al.,2004; Taverniers et al.,

    2005; Windels et al., 2001, 2003) and from environmental samples

    (Aono et al., 2006; Messean et al., 2007; Ortiz-Garcia et al., 2005; Quist

    and Chapela, 2001; Saji et al., 2005). Testing may also provide tools to

    implement traceability of GMO derivatives in animals and humans

    that have consumed GM material (Chowdhury et al., 2003a,b; Nielsen

    et al., 2005).

    2. Stakeholder roles and responsibilities

    The stakeholders (users of tests) and the analysts (providers of

    tests) play distinct roles and may have very diverse competence and

    interests in the GMO testing. Trust and reliability are keywords. Inac-

    curate test reports may be misleading, but reporting also has a

    translation component since the analytical competence of the stake-holders is often inferior and certainly differs from that of the analyst.

    Misperception and inaccuracy may lead to incorrect or suboptimal

    decisions by the stakeholders. The test report therefore must provide

    information not only about the test result but also about the uncer-

    tainties and limitations associated with the test result. This informa-

    tion must be presented in a form that is perceived and interpreted

    correctly by the stakeholder. The responsibilities of the analysts

    include: 1) appropriate choice of testing method, including method

    validation status; 2) identication of potential sources of error in

    reporting and translation of results; and 3) communication with the

    stakeholdersa priori, explaining what the analyst can provide, and a

    posteriori, explaining what the results mean including relevant

    limitations. Most testing is not performed by the same people who

    sample the material that is subject to testing, and sampling is notcovered in the present paper. Because the sampling error may be

    much larger than the analytical measurement uncertainty or error, the

    interested reader is referred to Allnutt et al., (2008); Brera et al.,

    (2005); Bridges, (2007); Committe Europeen de Normalisation (CEN),

    (2006);Degrieck et al., (2005);Emslie et al., (2007);Kobilinsky and

    Bertheau, (2005); Paoletti et al., (2006); and Remund et al., (2001) for

    more information on sampling.

    Selecting the analytical method can be challenging when multiple

    optional methods are available. The best choice for one laboratory or

    situation is not necessarily the best for another. Minimizing cost and

    time are often prioritized, but this can easily be at the expense of

    reliability. The European Network of GMO Laboratories (ENGL) has

    prepared a guidance document for method acceptance (European

    Network of GMO Laboratories, 2008) that has been adopted by the

    European Commission's Community Reference Laboratory for GM

    Food and Feed (CRL-GMFF). The document is biased towards quantita-

    tive real-time PCR methods. This and other related documents on the

    CRL-GMFF website http://gmo-crl.jrc.ec.europa.eu/guidancedocs.htm

    may be useful for analytical laboratories in selecting, comparing and

    validating methods. If a multilaboratory trial has been performed on a

    method, it is often easier to assess its reliability than if the validation

    of the method is limited to experiments performed by a single (devel-

    oping) laboratory. Method harmonisation is often desirable because itfacilitatestransparency and comparison of results between laboratories.

    Norms or standards have been published or are under establishment

    at regional and national level in many countries (e.g. P.R. China, France,

    Germany, Korea, Japan, Switzerland) as well as at European and inter-

    national level (Codex Alimentarius Commission, 2008; International

    Organization for Standardization, 2004, 2005a,b,c,d, 2006). Interna-

    tional method harmonisation is reinforced by the publication of collab-

    orative trial validated methods and validation reports by the CRL-GMFF

    (European Commission, 2009). However, there may also be reasons to

    choose non-harmonised methods. Cost, specicity, convenience, new

    information or availability of reference materials are examples.

    Recently, a GMO database (Dong et al., 2008) providing informa-

    tion on detection methods and including specic DNA sequences of

    inserted and anking elements in many of the GMOs, was launched.

    This database, although still suffering from minor inaccuracies in

    sequence annotations and lacking considerable parts of inserts of

    several GMOs, will certainly be a useful tool for method developers

    and even more so for analytical laboratories and stakeholders who

    wish to interpret or verify test results. Contributing to update this

    database and possibly establish mirror versions in other countries,

    could be seen as a collective task for stakeholders involved in detec-

    tion of GMOs.

    Uncertainty and error associated with a measurement result must

    be communicated in the test reports. The analyst must identify the

    potential sources of uncertainty and error, and quantify or at least

    establish a relative rank of the contribution by each source (Zel et al.,

    2007). Lack of correspondence between test results produced in dif-

    ferent laboratories may be caused by differences in methods speci-

    city, sensitivity or analyte recovery, resulting in bias. However,several biological factors are too often ignored by analysts and stake-

    holders (Holst-Jensen et al., 2006). The unit of measurement and

    expression of GMO content is often indicated as the mass:mass ratio

    of GMO:ingredient, partly because the rst generation of certied

    GMO testing reference materials were mass based (Trapmann et al.,

    2002a,b). However, the analytical methods applied usually measure

    particular analytes such as the number of copies of DNA molecules or

    proteins (Holst-Jensen et al., 2003, 2006).

    In order to facilitate translation from DNA based to mass based

    concentration of GMO, it has been proposed that a conversion factor

    may be applied (Kuribara et al., 2002; Shindo et al., 2002). The factor

    may adjust for some of the most inuential biological factors

    discussed by Holst-Jensen et al., 2006. However, the proposed

    conversion factor is always derived from the reference material usedand does not necessarily reect the nature of the sample material. So,

    if for example the reference material is derived from a hemizygous

    GMO while the sample is derived from a homozygous GMO, then the

    conversion factor will yield an estimated mass based concentration

    that is approx. twice the true mass based concentration.

    Cloned DNA was therefore early proposed as an attractive and t-

    for-purpose alternative type of reference material (Blockand Schwarz,

    2003; Burns et al., 2006; Kuribara et al., 2002; Shindo et al., 2002;

    Taverniers et al., 2001, 2004). The Japanese GMO standards have

    applied cloned DNA reference materials since 2002 (Shindo et al.,

    2002). More recently, reference materials have been made available

    certied for their DNA analyte content (Charels et al., 2007a,b). For

    qualitative purposes, and when the reference material is particularly

    precious, it may be suitable to use whole genome amplied DNA from

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    genomic DNA samples (Roth et al., 2008). However, this type of

    reference material is clearly unt for quantitation.

    The materials analysed in the laboratory may vary from low pro-

    cessed grains to highly processed composite foods or feeds. The

    quality and quantity of analyte extracted and puried from the sam-

    ples may vary correspondingly (Cankar et al., 2006; Moreano et al.,

    2005). The laboratory should always report the limits of detection

    (LOD) and/or quantication (LOQ) together with the test result. It is,

    however, important to distinguish between an LOD/LOQ determinedfor the analytical method and the LOD/LOQ determined for the sample

    subject to analysis. A processed and composite product may contain

    very little of the target analyte compared to an unprocessed single

    ingredient product. Consequently, the LOD/LOQ of the sample may be

    100-fold inferior to the LOD/LOQ of the method (Berdal et al., 2008;

    Berdal and Holst-Jensen, 2001; Holst-Jensen et al., 2003). In such

    cases, reporting only the method specic LOD/LOQ is misleading to

    the stakeholders reading the test report, and may easily give an

    unjustied positive impression of the reliability of a negative result.

    3. Development and evolution of GMOs

    The rst GMOs on the market were plants carrying single trait

    genes regulated by only a few common promoter (mainly the cauli-

    ower mosaic virus 35S promoter) and terminator (mainly the

    Agrobacterium tumefaciens3nos) elements (AgBios, 2008; Hemmer,

    1997). The transformation vectors carried an additional marker gene

    construct, usually transcriptionally inactive in the plant. With few

    exceptions, the traits were agronomic, dominated by herbicide

    (glyphosate, gluphosinate and oxinyl) tolerance and insect resistance

    (various forms ofBacillus thuringiensis Cry proteins). For laboratories

    wishing to develop detection methods, availability of corresponding

    reference material was often a problem (Holst-Jensen et al., 2003).

    Consequently, the GMO testing methods developed were focused on

    detection of generic elements or features found in the GMOs such as

    the promoter and terminator elements (DNA based methods) or Cry

    proteins in their native form (Anklam et al., 2002; Hernandez et al.,

    2005a,b; Holst-Jensen et al., 2003; James et al., 2003; MacCormick

    and Grifn, 1998; Rodriguez-Lazaro et al., 2007). As the number of

    commercialised GMOs increased towards the turn of the millennium,it became evident that the generic (screening) methods were often

    unable to comply with stakeholder requirements such as authorisa-

    tion and labelling regulations because identication and/or quantita-

    tion could not be achieved.

    With a few early exceptions such as the Flavr Savr tomato, which

    was ripening delayed giving enhanced shelf life, practically all com-

    mercialised GMOs express agronomic traits. Traits primarily benecial

    to theconsumers arestillin thepipeline, despite optimistic announce-

    ments from developers over the last decade (Engel et al., 2002).

    Examples include rice enriched with vitamin A and altered fatty acid

    composition of oils from oleaceous grains (AgBios, 2008).

    A new trend began with the new millennium, where multiple

    agronomic traits were combined (gene stacking or pyramiding; see

    Taverniers et al., 2008and references therein). This introduced a new

    challenge to the analysts. With exception for testing of single seeds or

    tissue derived from individual plants, none of the existing detection

    methods could discriminate between the combined presence of two

    or more single trait GMOs and stacked GMOs (Akiyama et al., 2005;

    Holst-Jensen et al., 2006; Taverniers et al., 2008). The number of traits

    that have been combined in stacked GMOs is rapidly growing, and the

    rst 8-stack (SmartStax) is presently subject to regulatory review by

    Fig. 1.Evolution of GMO detection methods and associated reference materials.

    1073A. Holst-Jensen / Biotechnology Advances 27 (2009) 10711082

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    Table 1

    Examples of PCR based detection methods.a

    Species Event OECD unique ID Tradename(s) Construct C, geneG

    or event EspecicbReference

    Cotton 281-24-236 DAS-24236-5 Widestrike E Baeumler et al. (2006),European Commission (2009)

    3006-210-23 DAS-21023-5 Widestrike E Baeumler et al. (2006),European Commission (2009)

    GBH614 BCS-GH002-5 E European Commission (2009)

    GK12 C Cheng et al. (2007)

    GK19 C Yang et al. (2005a)

    LLCOTTON25 ACS-GH001-3 E European Commission (2009)ME (QL) Kim et al. (2008b)

    Mon531 MON-00531-6 C Yang et al. (2005a)

    E European Commission (2009),Yang et al. (2005b)

    Mon1445 MON-01445-2 E European Commission s(2009),Yang et al. (2005b)

    ME (QL) Kim et al. (2008b)

    Mon15985 MON-15985-7 BollGardII C Lee et al. (2007)

    E European Commission (2009)

    ME (QL) Kim et al. (2008b)

    Mon88913 MON-88913-8 C Lee et al. (2007)

    ME (QL) Kim et al. (2008b)

    SGK321 C Yang et al. (2005a)

    Maize (corn) 3272 SYN-E3272-5 E European Commission (2009)

    59122 DAS-59122-7 E European Commission (2009)

    Bt10 E (QL) European Commission (2009),Watanabe et al. (2007)

    Bt11 SYN-BT011-1 C Brodmann et al. (2002),Matsuoka et al. (2002),

    Peano et al. (2005b)

    MC (QL) Germini et al. (2004),Hernandez et al. (2003b),

    Matsuoka et al. (2001a),Onishi et al. (2005),

    Peano et al. (2005a)

    MC Rudi et al. (2003)

    E (comp) Zimmermann et al. (2000)

    E European Commission (2009),Rnning et al. (2003),

    Taverniers et al. (2005)

    ME (QL) Hernandez et al. (2005a,b),Xu et al. (2007)

    Bt176 SYN-EV176-9 G Bordoni et al. (2004),Ehlers et al. (1997)

    G (comp) Garcia-Canas et al. (2004a,b)

    C Brodmann et al. (2002),Matsuoka et al. (2002),

    Peano et al. (2005b),Vatilingom et al. (1999)

    MC (QL) Germini et al. (2004),Hernandez et al. (2003b),

    Matsuoka et al. (2001a),Onishi et al. (2005),

    Peano et al. (2005a)

    MC Rudi et al. (2003)

    E Taverniers et al. (2005)

    ME (QL) Xu et al. (2007)

    CBH351 Starlink MG Rudi et al. (2003)C Matsuoka et al. (2001b)s

    E (QL) Windels et al. (2003)

    DBT418 MG Rudi et al. (2003)

    DLL25 C Matsuoka et al. (2002)

    Event 32 DAS-59132-8 E European Commission (2009)

    GA21 MON-00021-9 MG Rudi et al. (2003)

    C Hernandez et al. (2004),Matsuoka et al. (2002),

    Peano et al. (2005b)

    MC (QL) Germini et al. (2004),Hernandez et al. (2005a,b),

    Hernandez et al. (2003b),Matsuoka et al. (2001a),

    Nadal et al. (2006),Onishi et al. (2005),Peano et al.

    (2005a)

    E European Commission (2009),Oguchi et al. (2008),

    Taverniers et al. (2005)

    ME (QL) Xu et al. (2007)

    LY038 REN-00038-3 C

    E European Commission (2009)Mir604 SYN-IR604-5 C

    E European Commission (2009)

    Mon802 C Matsuoka et al. (2002)

    Mon810 MON-00810-6 MaisGard C Brodmann et al. (2002),Matsuoka et al. (2002),

    Peano et al. (2005b)

    C (comp) Zimmermann et al. (1998)

    MC (QL) Germini et al.(2004),Hernandez et al. (2003b),

    Matsuoka et al. (2001a),Onishi et al. (2005),

    Peano et al. (2005a)

    MC Rudi et al. (2003)

    E European Commission (2009),Gasparic et al.

    (2008),Hernandez et al. (2003a),Holck et al.

    (2002),Huang and Pan (2004),La Paz et al.

    (2007),Moreano et al. (2006),Pang et al. (2007),

    Salvi et al. (2008)

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    Table 1(continued)

    Species Event OECD unique ID Tradename(s) Construct C, geneG

    or eventEspecicbReference

    ME (QL) Hernandez et al. (2005a,b),Huang and Pan

    (2004),Nadal et al. (2006),Xu et al. (2007)

    Mon863 MON-00863-5 C Lee et al. (2006)

    MC (QL) Onishi et al. (2005)

    E European Commission (2009),Pan et al. (2006),

    Yang et al. (2005d)

    ME (QL) Xu et al. (2007)

    Mon88017 MON-88017-3 E European Commission (2009)

    Mon89034 MON-89034-3 E European Commission (2009)

    NK603 MON-00603-6 MC (QL) Onishi et al. (2005)

    E European Commission (2009),Huang and Pan

    (2004),Nielsen et al. (2004)

    ME (QL) Huang and Pan (2004),Nadal et al. (2006)

    T25 C Brodmann et al. (2002),Matsuoka et al. (2002)

    MC (QL) Matsuoka et al. (2001a),Onishi et al. (2005)

    MC Rudi et al. (2003)

    E Collonnier et al. (2005),European Commission

    (2009),Papazova et al. (2006)

    ME (QL) Hernandez et al. (2005a,b),Xu et al. (2007)

    TC1507 DAS-01507-1 MC (QL) Onishi et al. (2005)

    E European Commission (2009),

    La Paz et al. (2006)

    Papaya 55-1 (63-1) C Lo et al. (2007),Wall et al. (2004),Yamaguchi et al. (2006)

    Pepper Non-authorised

    herbicide tolerant

    C Song et al. (2007)

    Potato Bt6 New leaf C Rho et al. (2004),Watanabe et al. (2004)

    EH92-527-1 BPS-25271-9 E Broothaerts et al. (2007),European Commission (2009)

    RBMT21-350 New leaf plus C Rho et al. (2004),Watanabe et al. (2004)

    SEMT15-15 New leaf Y C Rho et al. (2004),Watanabe et al. (2004)

    E Watanabe et al. (2004)

    Non-authorised

    fungal resistant ac2

    G Pribylova et al. (2006)

    Rapeseed (canola) Falcon GS40/90 ACS-BN-1-4 Liberty link C Block and Schwarz (2003)

    GT73 MON-00073-7 MC (QL) Kim et al. (2007)

    E European Commission (2009),Kim et al. (2006a),

    Taverniers et al. (2005),Yang et al. (2007)

    ME (QL) Demeke and Ratnayaka (2008)

    Ms1 ACS-BN004-7 E Wu et al. (2007)

    Ms8 ACS-BN005-8 MG (QL) Demeke and Ratnayaka (2008)

    MC (QL) Kim et al. (2007)

    E European Commission (2009),Wu et al. (2008)

    OXY-235 ACS-BN011-5 MC (QL) Demeke and Ratnayaka (2008)Rf1 ACS-BN001-4 E Wu et al. (2007)

    Rf2 ACS-BN002-5 E Wu et al. (2007)

    Rf3 ACS-BN003-6 MG (QL) Demeke and Ratnayaka (2008)

    MC (QL) Kim et al. (2007)

    E European Commission (2009),Wu et al. (2008)

    T45 ACS-BN008-2 MC (QL) Kim et al. (2007)

    E European Commission (2009),Yang et al. (2006)

    ME (QL) Demeke and Ratnayaka (2008)

    Topas 19/2 ACS-BN007-1 E Wu et al. (2009)

    Rice Bt63 C European Commission (2009),Mde et al. (2006)

    LL62 ACS-OS002-5 E European Commission (2009)

    LL601 E (QL) European Commission (2009)

    Soybean A2704-12 ACS-GM005-3 E European Commission (2009)

    A5547-127 ACS-GM006-4 E European Commission (2009)

    DP-305423-1 DP-305423-1 E European Commission (2009)

    DP -356043-5 DP-35604 3-5 European Commission (2009)

    GTS40-3-2 MON-04032-6 RoundupReady MG (QL) Dainese et al. (2004)

    C Kim et al. (2004),Lerat et al. (2005) Liu et al.(2005),Pan and Shih (2003),Peano et al. (2005b),

    Tani et al. (2005),Vatilingom et al. (1999),

    Vollenhofer et al. (1999),Wang and Fang (2005),

    Zhang et al. (2007),Zhou et al. (2007)

    DC Foti et al. (2006)

    MC Germini et al. (2004),Hernandez et al. (2003b),

    Peano et al. (2005a)

    E Berdal and Holst-Jensen (2001),Burns et al. (2003),

    European Commission (2009),Huang and Pan (2005),

    Moreano et al. (2006),Pang et al. (2007),Taverniers

    et al. (2001),Terry and Harris (2001)

    ME (QL) Xu et al. (2007)

    MON89788 MON-89788-1 E European Commission (2009)

    Squash CZW-3 C Wall et al. (2004)

    ZW-20 C Wall et al. (2004)

    (continued on next page)

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    the US Environmental Protection Agency (EPA) and is expected to

    reach the market in 2010 (http://www.news.dow.com/dow_news/

    corporate/2008/20080616a.htm). There is good reason to anticipate

    that this trend will continue. However, in stead of combining single

    agronomic trait genes, the future GMOs may be transformed with

    gene clusters for example encoding partial or complete synthetic

    pathways. Articial and engineered chromosomes can be developed

    and allow forcombining the desired genes on stable inheritable single

    chromosomes (Birchler et al., 2008). This can be achieved in maize by

    exploiting the short supernumerary B chromosome to engineer a

    minichromosome comprised of little more than a centromere and a

    recombination segment where the insert(s)can be added. This system

    potentially improves genetic control and traceability, and may

    facilitate gene dosage regulation compared to Agrobacterium

    mediated or biolistic transformation techniques.

    Some stakeholders have expressed concern about the safety andethics of transgenics, viz. moving genes across species barriers

    (Nielsen, 2003; Russel and Sparrow, 2008). Gene technology may

    also be applied to intragenicsand famigenics, i.e. to move genes within

    or between reproductively compatiblespecies, essentially speeding up

    conventional breeding processes (Nielsen, 2003). This could raise

    fewer concerns, but the diversity of available and attractive trait genes

    would be drastically reduced. Interestingly, therst commercial GMOs

    were intragenics; the Flavr Savr tomato from Calgene and a similar

    tomato from Zeneca were modied by insertion of a truncated version

    of a tomato polygalacturonase gene (AgBios, 2008). Silencing of

    undesirable genes via intragenics is another option that may reduce

    safety and ethics concern (Weeks et al., 2008).

    Although there has been impressive progress towards the devel-

    opment of synthetic living organisms (SLOs) (Lartigue et al., 2007),there is still a gap between the transfer of a copied genome to a new

    host and introduction of a designed novel genome ( Holt, 2008). This

    technology will undoubtedly raise a cascade of ethical and scientic

    debates. While contained use of SLO microorganisms may be

    considered a realistic scenario within 1 or 2 decades, extension to

    environmental release is unlikely to obtain societal acceptance in the

    foreseeable future. Advanced life formssimilar to plants or animals are

    almost beyond imagination.

    4. Method development and availability

    The tools applied for GMO testing (Fig. 1) are primarily bioassays,

    protein based (mainly immunological) assays and DNA based assays

    (mainly applying the polymerase chain reaction [PCR] technology).

    However, also other technologies have been developed and these will

    briey be reviewed and discussed in the following along with the

    dominant technologies.

    Testing for a single trait or GMO event may require only a simple

    method, whereas testing for presence of multiple events, possibly for

    identication and quantication may require use of combinations of

    methods (Christianson et al., 2008; Holst-Jensen, 2007; James et al.,

    2003; Waiblinger et al., 2008).

    Bioassays are based on the principle of exposing plant seedlings

    from a seed batch to e.g. a herbicide to which the GMO plants are

    tolerant whereas non-GMOs are susceptible. Counting the survivors

    and compare with the number of affected plants will give the relative

    GMO content in the seed lot. The advantages of bioassays are poten-

    tially low costs, few requirements for user competence and the ability

    of the assays to conrm the desired biological properties of the GMOs.

    Their drawback is that they can only be applied to certain biologicalproperties, they usually require longer time to perform than protein

    and DNA based assays, and their specicity is limited.

    Proteins can be detected by application of immunological and

    physicochemical techniques. The most common protein based assays

    are immunoassays where the target proteins (the antigens) are detec-

    ted by specic antibodies coupled to a colorimetric detection system.

    Application of immunoassays has evolved little (Fig. 1) compared to

    application of DNA based methods, and they are mainly applied as

    convenient and cost effective screening tools for the large scale

    farming industry working with single ingredient materials of low or

    unprocessed grade. Two main factors may partially account for the

    limited evolution: the costs of developing specic antibodies, and the

    fact that antibodies can not be described and synthesised in a simple

    way in contrast to oligonucleotides applied with DNA based methods.Signicant improvements are mainly a shift from polyclonal to more

    specic monoclonal antibodies, and from laboratory based enzyme

    linked immunosorbent assays (ELISA) to portable lateral ow strips

    (LFS) that can be applied in the eld, at on- and off-loading points and

    at storage and processing facilities. The potential for quantitation has

    also improved. Although multiplexing of immunological methods

    could be achieved using microarray formats (Ling et al., 2007), the

    most promising initiative towards multiplexing of immunoassays for

    GMO detection until now is one involving the application of coloured

    beads coated with the antibodies and analysed by ow cytometry

    (Fantozzi et al., 2007).

    Because the expression and translation of genes can be low, e.g. if

    regulated by a tissue specic promoter or affected by environmental

    factors, sensitivity and reliable quantiability is often a problem with

    Table 1(continued)

    Species Event OECD unique ID Tradename(s) Construct C, geneG

    or event EspecicbReference

    Sugarbeet RUR H7 KM-000H71-4 E European Commission (2009)

    Tomato FlavrSavr C Meyer (1995)

    Huafan no1. C Yang et al. (2005c)

    Wa termelon Non-au thor ised

    virus resistant

    G Kim et al. (2008a)

    Unspecic t axon Scr eening

    marker (gene)

    Target version Originally applied to

    3nos various GMOs Liu et al. (2007),Reiting et al. (2007),Sun et al. (2007)

    Cry1A(b) GM maize Danson et al. (2006)

    Cry1A(c) GM cotton Cheng et al. (2007),Singh et al. (2007)

    Cry1Ab (Bt176) Lutz et al. (2006)

    Cry1Ba GM maize Danson et al. (2006)

    Cry9C CBH351 Starlink maize Orlandi et al. (2002),Quirasco et al. (2004)

    P35S Various GMOs Cankar et al. (2008),Kunert et al. (2006),Liu

    et al. (2007),Xu et al. (2006a)

    Pat/bar Chinese cabbage Lim et al. (2007)

    Pat/pat T25 maize Weighardt et al. (2004)

    Vip3A/vip-s Cotton and tobacco Singh et al. (2008)

    a This table does not list multiplex methods where the majority of targets are typical screening targets.b MC=multiplex method where this target is construct specic, MG =multiplex method where this target is gene specic, ME =multiplex method where this target is event

    specic. QL=method is qualitative but not quantitative.

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    immunoassays. Improved sensitivity may be achieved for example

    by combining the immunoassay with PCR (Allen et al., 2006). Genes

    regulated by constitutive promoters may also have relatively stable

    expression and translation levels. Quantitative application of immu-

    noassays is an option under certain conditions but normally not in

    highly processed or composite products (Ermolli et al., 2006;

    Rodriguez-Nogales et al., 2008; Shim et al., 2007; Van den Bulcke

    et al., 2007; van Duijn et al., 2002).

    Alternative protein based methods described include use of immu-nomagnetic electrochemical sensors (Volpe et al., 2006), 2-dimen-

    sional gel electrophoresis (Kim et al., 2006b) and mass spectrometry

    (Ocana et al., 2007).

    DNA based assays are particularly applied by global traders, the food

    processingindustry and law enforcement authorities. The advantagesof

    DNA based assays are primarily specicity and sensitivity. Their

    drawbacks are primarily cost and competence requirements. Since the

    genetic modication bydenition aremodications of DNA, it is evident

    that DNA based methods are at the highest level of metrological

    traceability, compared to methods that detect and measure transcrip-

    tional (RNA), translational (protein) or phenotypic (bioassays) deriva-

    tives of the modied DNA, respectively (listed in falling order of

    metrological traceability).

    Table 1is an incomplete list of major GMOs and PCR based meth-

    ods for their detection. The Table includes multiplex methods and the

    validation status for many of the methods is uncertain. It is strongly

    recommended to make further investigations to ensure that only

    validated methods are applied for diagnostic purposes. One of the

    most sensational and debated studies of the environmental impact of

    GMOs (Quist and Chapela, 2001) has been heavily criticized for

    possible use of insufciently validated methods or methods unt-for-

    purpose and lack of appropriate controls (Christou, 2002; Kaplinsky

    et al., 2002; Metz and Ftterer, 2002) with the consequence that the

    results are subject to reduced acceptance.

    A wide range of alternativesto conventionalgel electrophoresisexist

    fordetection and identicationof thePCR amplied targets: capillarygel

    electrophoresis (Garcia-Canas et al., 2004b; Heide et al., 2008a,b; Nadal

    et al., 2006), hybridisation to labelled and coloured beads and ow

    cytometry (Fantozzi et al., 2008), array hybridisation (Germini et al.,2005; Hamels et al., 2009; Leimanis et al., 2006; Morisset et al., 2008a;

    Prins et al., 2008; Xu et al., 2007, 2006b), immunological detection with

    dipsticks (Kalogianni et al., 2006), surface plasmon resonance (Feriotto

    et al., 2003), various electrochemical sensors (Kumar and Kang, 2007;

    Sun et al., 2007, 2008; Xu et al., 2006a) and detection by liquid chroma-

    tography and mass spectrometry (Shanahan et al., 2006).

    While PCR is the dominating DNA based technology, alternatives

    such as isothermal amplication (Fukuta et al., 2004; Morisset et al.,

    2008a,b), direct detection of genomic DNA by electrochemical sensors

    (Stobiecka et al., 2007), cDNA analysis by microarray (Chen et al., 2004)and direct hybridisation of genomic DNA to microarrays (Nagarajan and

    De Boer, 2003; Tengs et al., 2007) have also been proposed.

    High throughput methods have recently been developed and are

    presently nding their way to routine laboratories. These tools

    become particularly attractive if they can be combined with automa-

    tion technology. These high throughput methods are either based on

    combinations of one or several oligoplex PCRs followed by multiplex

    (pooled) identication of the amplied DNA (Hamels et al., 2009;

    Heide et al., 2008a,b; Leimanis et al., 2008; Mano et al., 2009; Nadal

    et al., 2006) or apply multiple simultaneous PCRs (Chaouachi et al.,

    2008; Mano et al., 2009).

    5. Unauthorised GMOs

    One of the main challenges of today is the possible presence of

    unauthorised GMO or derived material in the food chain or the

    environment (Holst-Jensen, 2008; U.S. Department of Agriculture,

    2008; United States Government Accountability Ofce, 2008; Vermij,

    2006). There is currently a rapid increase in the number of GMO events

    authorised in some but not all countries (sometimes referred to as

    asynchronous authorisation) and the number of additional events

    subject to eld trials potentially leading to pollenow (Fox, 2003, 2001;

    Holst-Jensen, 2008; Krueger and Le Buanec, 2008; MacCormick and

    Grifn, 1998). Illegal intended or unintended releases for example from

    experiments in research laboratories mayalso takeplace,although with

    a very low probability (Holst-Jensen, 2008). These may pose signicant

    risks to human and animal health and the environment.

    The immediate consequences are affecting international trade

    (European Commission, 2007; Krueger and Le Buanec, 2008; U.S.Department of Agriculture, 2008; United States Government

    Fig. 2.The matrix approach. An example of a stepwise application. 1) A relational matrix correlating the performance of specic analytical modules with known GMO events is rst

    created. It is recommended to verify experimentally that the correlation is true. If a module is known to yield a positive signal when reference material of a particular GMO event is

    analysed, then a +is tabulated in the matrix (upper left). If a module is known to yield a negative signal, then a is tabulated. 2) Samples are analysed using either a multiplex

    method or multiple simplex modules for screening targets A, B, C, D and E, and construct speci c targets F, G and H. The results for each sample and target is tabulated (lower left).

    3) The observed patterns for each sample are matched against the relational matrix. If all targets known to yield a positive signal with reference material of a particular event are

    positive when thesample is tested, then thematchis Perfect forthatparticular GMOeventin that particular sample(upper right). If themajority butnot allof thetargetsknownto

    yield a positive signalwithreference materialare positive,then thematch is Part_missing. Ifonly a minority of thetargets knownto yield a positive signalwith referencematerialis

    positive, then the match is Mostly_missing. If none of the targets known to yield a positive signal with reference material are positive, then the match isNegative. 4) To check for

    possible presence ofGMO eventsnot includedin therelationalmatrix,e.g.unauthorisedGMOevents,the matchpatternis further examined,e.g.listing allobservedtargetsthatcanbe

    referred to one or more Perfectmatches, followed by a slash and a list of the targets that cannot be referred to one or more Perfectmatches (lower right). The latter list of targets

    maybe used asa basis forassessmentof presence ofmaterialfroman unauthorisedGMO event.Notably, thematrixapproachmaybe appliedin a numberof differentbutrelatedways.

    Usually,a softwareis neededto support datainterpretation.Vericationmaybe done,e.g.usingeventspecic analyticalmodules.When concentrationsof targets arenear or belowthe

    limit of detection, then the probability of false negatives is high, and this may affect the match scoring. Care should therefore always be taken when results are interpreted.

    1077A. Holst-Jensen / Biotechnology Advances 27 (2009) 10711082

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    Accountability Ofce, 2008). Other possible consequences include

    reduced consumer trust in the industry, technology and authorities.

    For the incidents of unauthorised events reported so far, no evidence of

    signicant harm to human healthhas been provided.Yet, these repeated

    incidents challenge the present regulations in many countries that

    require authorisationbasedon thorough safetyassessments prior to any

    release or marketing. To cope with the challenge, a number of detection

    approaches have been developed and additional approaches are under

    development. The simplest include application of event speci

    cmethods for unauthorised events (Akiyama et al., 2007; Babekova

    et al., 2009; Grohmann and Mde, 2009; Mde et al., 2006 ). Another

    alternative is application of combinations of screening methods and

    comparing the results with tabulated data on presence/absence in

    individual authorised events; where patterns that do not match are

    indicative of presence of unathorised GMO (James et al., 2003; Mano

    et al., 2009; Waiblinger et al., 2008). This approach is often referred to as

    the matrix approach (Chaouachi et al., 2008; Hamels et al., 2009;

    Remacle and Bertheau, 2001) (Fig. 2) and is favoured by many

    laboratories as part of their general GMO screening strategy e.g. prior

    to application of quantitative and conrmative event specic detection.

    One of the drawbacks of the matrix approach is that it does not provide

    conclusive evidence of the presence of unauthorised GMO. It is also

    hampered by the uncertain performance of the screening tests with

    individual GMOs, and may be challenged by simultaneous presence of

    multiple GMOs in a sample. One strategy that may at least partially

    improve theapplicability of thematrix approach is theuse of differential

    quantitative screening (Cankar et al., 2008). Combining screening

    targets with ngerprinting approaches such as anchor PCR (Theuns

    et al., 2002) followed by conrmatory sequencing of the suspected

    amplied fragment(s) may further facilitate the detection and identi-

    cation of unauthorised GMOs (Taverniers et al., pers.commun.), as

    exemplied by the detection of unexpected inserts and rearranged DNA

    in Roundup Ready soybean by (Windels et al., 2001). However, this

    approach requires a comprehensive fragment prole reference database

    and may not be suited for samples with low level presence. Finally,

    advanced approaches based on screening of whole genomes for foreign

    DNA e.g. by microarray analysis have been proposed and partly

    demonstrated (Nesvold et al., 2005; Tengs et al., 2007).

    6. Future perspectives

    Current testing methods are generally too expensive and unt for

    in-eld applications, or lack sufcient specicity and ability to

    quantify the GMOs. Future technologies are expected to be faster,

    cheaper and allow for both multiplexing and quantitation, should be

    portable and yet sufciently specic and quantitative. Achieving all

    these goals may be difcult. In the meantime it is likely that

    laboratories will be increasingly dependent on efcient screening

    strategies based on both multiplex protein and DNA screening,

    applying a matrix approach to determine the need for more specic

    identication and quantication methods. Semiquantitative methods

    may nd increased popularity when formal thresholds are in place, inorder to sort samples into three categories: 1) compliant with specic

    quantitative threshold, 2) non-compliant with specic threshold, and

    3) in need for further quantitative analysis.

    Low level presence of events that are not authorised but have

    been evaluated and considered safe in other countries may become

    more acceptable in many countries in order to minimise negative

    effects on global trade. However, on a global scale the requirements

    for GMO testing with particular focus on presence of unauthorised

    GMOs are likely to increase, see e.g. (U.S. Department of Agriculture,

    2008; United States Government Accountability Ofce, 2008). Given

    the limitations of the matrix approach as currently implemented, it

    is evident that there will be a need for developments of new

    analytical tools to facilitate detection of non-tolerable unauthorised

    events.

    Novel transformation technologies may redene the types

    of analytical target. Intragenics, SNPs and gene silencing to some extent

    preclude the use of protein or PCR based GMO detection. Possible

    alternatives to cope with these include genome microarrays, DNA se-

    quencing approaches, electrochemical sensors and mass spectrometry.

    International harmonisation and exchange of information on GMO

    developments,eldtrials andDNA sequencesinvolved, at least among

    competent authorities and their associated control laboratories, may

    not only facilitate monitoring for unauthorised GMOs, but could alsobe a necessity to reduce possible negative consequences for global

    trade. Finally, developments in regulation of biotechnology and

    requirements for authorisation and labeling may result in altered

    priorities and create new challenges to the GMO testing laboratories,

    as exemplied by the present challenges associated with gene stacks

    (Taverniers et al., 2008).

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