1st EELA Grid School 1st EELA Grid School December 6th of 2006December 6th of 2006

Eduardo MURRIETA LEON

Romualdo ZAYAS LAGUNAS

Pierre-Alain BRANGER

Jérôme VERLEYEN

Roberto RODRIGUEZ

César BONAVIDES

Alfredo HERNANDEZ

EMBOSS over a GridEMBOSS over a Grid

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Emboss over a GridEmboss over a Grid

InstallationInstallation

Uncompress EMBOSS-latest.tar.gzUncompress EMBOSS-latest.tar.gz configure, make, make installconfigure, make, make install Installation of embassy (non Installation of embassy (non

EMBOSS tools)EMBOSS tools) Setting up DB (4.4GB/3.5hs/20%)Setting up DB (4.4GB/3.5hs/20%) Tests, OK!Tests, OK!

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Emboss over a GridEmboss over a Grid

Plan APlan A

UI

BDII

CE WNs

RB

JDL FileJDL File

Type = "Job";Type = "Job";

JobType = "Normal";JobType = "Normal";

Executable = “seqret";Executable = “seqret";

Arguments = "-outseq“,”salida.fasta”;Arguments = "-outseq“,”salida.fasta”;

StdError = “stderr.err";StdError = “stderr.err";

InputSandbox = { “seqret”, “*fasta”, “*idx”, InputSandbox = { “seqret”, “*fasta”, “*idx”, … };… };

OutputSandbox = {“salida.fasta“, “stderr.err”};OutputSandbox = {“salida.fasta“, “stderr.err”};

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Emboss over a GridEmboss over a Grid

Plan BPlan B

UI

BDII

CE WNs

RB

JDL FileJDL File

Type = "Job";Type = "Job";

JobType = "Normal";JobType = "Normal";

Tag = “EMBOSS-4.0.0”;Tag = “EMBOSS-4.0.0”;

Executable = “seqret";Executable = “seqret";

Arguments = "-outseq“,”salida.fasta”;Arguments = "-outseq“,”salida.fasta”;

StdError = “stderr.err";StdError = “stderr.err";

OutputSandbox = {“salida.fasta“, OutputSandbox = {“salida.fasta“, “stderr.err”};“stderr.err”};

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Emboss over a GridEmboss over a Grid

Plan CPlan C

UI

BDII

CE WNs

RBSE

GFAL

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Emboss over a GridEmboss over a Grid

Muito ObrigadoMuito Obrigado

Respostas !