1471 2105 14 325 S3
1
0 1 2 3 4 5 6 7 8 9 10 0 0.5 1 Initial SNP Score 80 40 10 Number of Mismatches SNP Score Nucleot ide Window 1 2 3 4 5 6 7 8 9 10 0 0.1 0.2 Nearly Identical Paralogs 0. 9 0. 8 Number of Nearly Identical Paralogs SNP Score Initi al Score No Evidence 1 2 3 4 5 0 0.2 0.4 0.6 0.8 Initial 0.8 SNP Score Modified by Paralog Information No Evidence 1 2 3 Regional Evidence For Number of Copies of Gene SNP Score Entire Gene Copies A B C D 1 2 10 50 100 1000 0 0.2 0.4 0.6 0.8 Initial 0.8 SNP Score Modified by Coverage of Both Alleles 1 2 10 50 100 1000 Allele 1 Read Count SNP Score Allele 2 Read Count
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Transcript of 1471 2105 14 325 S3
0 1 2 3 4 5 6 7 8 9 100
0.20.40.60.8
1 Initial SNP Score
80
40
10
Number of Mismatches
SNP
Scor
e
Nucleotide Window
1 2 3 4 5 6 7 8 9 100
0.050.1
0.15 Nearly Identical Paralogs0.9
0.8
0.7Number of Nearly Identical Paralogs
SNP
Scor
e
Initial Score
No Evidence 1 2 3 4 50
0.10.20.30.40.50.60.70.8
Initial 0.8 SNP Score Modified by Paralog Information
No Evidence 1 2
3 4 5
Regional Evidence For Number of Copies of Gene
SNP
Scor
e
Entire Gene Copies
A
B
C
D
1 2 10 50 100 10000
0.2
0.4
0.6
0.8Initial 0.8 SNP Score Modified by Coverage of Both Alleles
1210501001000
Allele 1 Read Count
SNP
Scor
e Allele 2 Read Count
