141 physics of mri
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Transcript of 141 physics of mri
Physics of MRI
• Course syllabus
– Lecture 1: Intro to NMR Dr. Lowe– Lecture 2: Imaging Sequences I Dr. Buckwalter– Lecture 3: Imaging Sequences II Dr. Buckwalter– Lecture 4: Spatial encoding I Dr. Buckwalter– Lecture 5: Spatial encoding II Dr. Buckwalter– Lecture 6: Spin prepped imaging Dr. Lowe– Lecture 7: Ultrafast imagingDr. Lowe
http://www.indyrad.iupui.edu/public/lectures/mri/iu_lectures/mri_homepage.htm
Loose Ends
Energy Absorption
β0
M0=x M0=z
900 tip
900 RF pulse
ω=ω0
Relaxation
β0
t=t0
RF
t=t1
ML=0t=t2
ML=at=t3
ML=bt=∞ML=1
….
t
ML
t0 t1 t2 t3
Relaxation and Imaging
• FID (free induction decay) is the relaxation behavior following a single RF pulse
• most imaging done with repetitive RF energy deposition
• the interval between the RF energy pulses is called the TR interval (time to repetition)
Relaxation
β0
t=t0
900 RF
t=t3
ML=bt=t4
ML<b
900 RF
t=t3+
ML=0
900 RF
t=t4+
ML=0
t=t5
ML<<b
TR TR
Equilibrium
• after 5 or so repetitions, the system reaches equilibrium
• similar to water flowing into a leaky bucket
relaxation
RF in
equilibrium
Differential Relaxation
• short TR
• lower absolute ML
• marked difference in relative signal
• long TR
• higher absolute ML
• minimal difference in relative signal
fat protonswater protons
T1 Relaxation
0
0.2
0.4
0.6
0.8
1
1.2
0 1000 2000 3000 4000 5000 6000
msec
ML
long T1
short T1
Image Contrast and T1 Relaxation
• shorter TRs maximize differences in T1 relaxation, generating tissue contrast
• longer TRs minimize differences in T1 relaxation, reducing T1 tissue contrast
Imaging Sequencespart I
• Gradient Echo
• Spin Echo
• Fast Spin Echo
• Inversion Recovery
Goals of Imaging Sequences
• generate an RF signal perpendicular to β0
• generate tissue contrast
• minimize artifacts
Measuring the MR Signalz
y x
RF signal from precessing protons
RF antenna
β0
Gradient Echo• simplest sequence
– alpha flip-gradient recalled echo
• 3 parameters– TR
– TE
– flip angle
• reduced SAR• artifact prone
Gradient Echo
FID gradient recalledecho
αRF pulse
rephase
dephase
signal
gradient
z
y x
z
y x
α0 RF
t=t0 t=t0+
Partial Flip
α0 ML
MXY
M
MXY = M sin(α)
ML = M cos(α)
Dephasing in the xy-planeview from the top
y
xz Mxy
y
xz
Mxy≈0dephase
phase coherency phase dispersion
y
xz Mxy
phase coherencyminus t2* decay
Rephasing in the xy-planeview from the top
rephase
y
xz
Mxy≈0
phase dispersion
MR Signal During Rephasingz
y x
RF signal“echo”
RF antennaβ0
T2* decay
• occurs between the dephasing and the rephasing gradients
• rephasing incompletely recovers the signal
• signal loss is greater with longer TEs
• decay generates image contrast
T2* decay
• T2* decay is always faster than T2 decay
• gradient echo imaging cannot recover signal losses from– magnetic field inhomogeneity
– magnetic susceptibility
– water-fat incoherence
T2 and T2* Relaxation
• T2* relaxation influences contrast in gradient echo imaging
• T2 relaxation influences contrast in spin echo imaging
Gradient Echopulse timing
echo
RF
signal
readout
α0
phase
slice
TE
Gradient Echoadvantages
• faster imaging– can use shorter TR and shorter
TEs than SE
• low flip angle deposits less energy– more slices per TR than SE
– decreases SAR
• compatible with 3D acquisitions
Gradient Echodisadvantages
• difficult to generate good T2 weighting
• magnetic field inhomogeneities cause signal loss– worse with increasing TE times
– susceptibility effects
– dephasing of water and fat protons
Gradient Echochanging TE
TE 9FA 30
TE 30FA 30
susceptibility effect T2* weighting
Gradient Echomagnetic susceptibility
post-surgical change“blooming” artifact
Gradient Echo
• image contrast depends on sequence
• conventional GR scan – aka GRASS, FAST
– decreased FA causes less T1 weighting
– increased TE causes more T2* weighting
Conventional GRTE 20, FA 15
Gradient Echo
• Spoiled GR– aka SPGR, RF-FAST
– spoiling destroys accumulated transverse coherence
– maximizes T1 contrast
Gradient Echo
• Contrast enhanced GR– aka SSFP, CE-FAST
– infrequently used because of poor S/N
– generates heavily T2* weighted images
Gradient Echo
• other varieties– MTC
• T2 - like weighting
– IR prepped• 180 preparatory pulse
– DE (driven equilibrium) prepped• 90-180-90 preparatory pulses• T2 contrast
MTC GRTE 13, FA 50
Spin Echo• widely used sequence
– 90-180-echo
• 2 parameters– TR
– TE
• generates T1, PD, and T2 weighted images
• minimizes artifacts
Spin Echo
FID spinecho
900 RF pulse
readoutfrequency encode
signal
gradient
180 0 RF pulse
Gradient versus Spin Echo
Spin Echo
FID spinecho
900 RF pulse
readoutfrequency encode
signal
gradient
1800 RF pulse
Gradient Echo
FID gradient recalledecho
αRF pulse
rephase
dephase
signal
gradient
900 Flip
z
y x
z
y x
900 RF
t=t0 t=t0+
900
AfterML=0MXY=M
BeforeML=MMXY=0
Dephasing in the xy-planeview from the top
y
xz Mxy
y
xz
Mxy≈0
phase coherency phase dispersion
Dephasing begins immediately after the 900
RF pulse.
t=0 t=TE/2900 RF
y
xz Mxy
phase coherencyminus t2 decay
Rephasing in the xy-planeview from the top
y
xz
Mxy≈0
phase dispersion
t=TE/2 t=TE1800 RF
z
y xz
y x
z
y x
z
y x
t=TE/2 t=TE
1800 RF
t=0
900 RF
dephased
rephased
1800 Flip
Spin Echopulse timing
echo
RF
signal
readout
90 0
phase
slice
TE
1800
WNMR Race
t=0
900 RF
WNMR Race
WNMR Race
t=TE/2
1800 RF
t=TE
WNMR Race
Effects of the 1800 Pulse
• eliminates signal loss due to field inhomogeneities
• eliminates signal loss due to susceptibility effects
• eliminates signal loss due to water/fat dephasing
• all signal decay is caused by T2 relaxation only
Spin Echoadvantages
• high signal to noise
• least artifact prone sequence• contrast mechanisms easier to
understand
Spin Echodisadvantages
• high SAR than gradient echo because of 900 and 1800 RF pulses
• long TR times are incompatible with 3D acquisitions
Spin Echo Contrast
• T1 weighted– short TR (450-850)
– short TE (10-30)
• T2 weighted– long TR (2000 +)
– long TE (> 60)
• PD weighted– long TR, short TE
Spin Echo ContrastT2 Relaxation
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1
0 100 200 300 400 500
msec
Mxy
long T2
short T2
T1 Relaxation
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
1
0 1000 2000 3000 4000 5000
msec
ML
long T1
short T1
T1 weighted - T1 relaxation predominates•Short TE minimizes differences in T2 relaxation•Short TR maximizes differences in T1 relaxation
T2 weighted - T2 relaxation predominates•Long TE maximizes differences in T2 relaxation•Long TR minimizes differences in T1 relaxation
T1 weighted T2 weighted
Spin Echo Contrast
Spin Echo Contrast
PD weighted T2 weighted