12 Chapter 3 Synthesis and biological...
Transcript of 12 Chapter 3 Synthesis and biological...
Chapter:- 3 Tetrahydro pyrimidine derivatives
105
CHAPTER 3
Synthesis and biological evaluation of
1,2,3,4-tetrahydro pyrimidines
3.1 Introduction
The actions of many transferable diseases are demanding due to fighting to
antimicrobial. The surfacing of fighting surrounded by bacteria to a broad range of
structurally dissimilar antibacterial agents such as 6- lactams, macrolides, and fluoro-
quinolones as well as particular dyes and disinfectants has turn into a civic fitness worry
so makes it necessary to maintain the search for new antibacterial agents.
In recent scenario heterocycles is the different rule in drug synthesis. In that
respect pyrimidine plays a significant rule among other heterocycles. From the literature
survey, in modern years 1,2,3,4-tetrahydropyrimidines have engrossed significant
awareness because of their therapeutic and pharmacological properties. more than a few
of them has establish to demonstrate a wide spectrum of genetic property as well as
antimicrobial, antitumour, antihypertensive, alpha-1a adrenergic antagonist,
neuropeptide antagonist. So it was planned to synthesize a novel series of 1, 2, 3, 4-
tetrahydropyrimidins derivatives and to check as antimicrobial activity[1-2].
About 10 decade ago chemist Biginelli found that the two components in equal
amount reacts for example aldehyde, aceto acetic ester and urea reacts in alcoholic
solvent in presence of hydrochloric acid to give a novel compound and well-known as a
biginelli compound [3].
Chapter:- 3 Tetrahydro pyrimidine derivatives
106
He did this reaction in a multi component method, and at present the progress of
multi component synthesis is an essential fraction of several study hard works
approximately the globe concerned in the drug progress agenda to get targets in prompt
way. It appear older innovation are novel way of the current moment. Succeeding
researcher has tried to know the path of reaction and they raise the contribution of the
Knoevenagel reaction.
About 200 years ago there was not a large amount reaction planned but in last 10
decade or so these reactions were involve grate interest with as an outcome about 500
publication were there, mainly some catalyst vary. In these time importance on accepting
the way of reaction. Pharmaceutical point of view these academic research was great
value because of this implication, study were extremely quick and mostly all journal was
publish paper with title Biginelli reaction.
Tetrahydropyrimidine is higher flooded pyrimidine nucleus with two less double
bonds. The Tetrahydro pyrimidines are small, highly soluble organic molecules, which do
not impede with normal cellular functions. They are zwitterion molecules, and the
amidine group of the THPs is positively charged [4, 5].
Tetrahydropyrimidine has the great property of their synthetic compatibility. It
can easily be modified[6]. Only few general methods for the synthesis of
tetrahydropyrimidine-2- thione derivatives have been reported. Biginelli[7] reports the
preparation of 3,4-dihydropyrimidine -2-one with multi reagent acid catalysed reaction
of aldehyde, urea and ethyl acetoacetate.
In few years back the multi reagent reactions has experienced a significant
renewal, due to the great pharmacological activity connected with this dihydropyrimidine
[8]. The low yield of pyrimidine is main drawback
Now atwal and et al [9-11] gives the smart approach to the preparation of this
compound. This reaction is supported on the reaction of arylidene of oxoesters with S-(4-
methoxybenzyl) isothio urea or o-methy lisourea in the presence of NaHCO3 followed by
Chapter:- 3 Tetrahydro pyrimidine derivatives
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change of the obtained dihydropyrimidine derivatives into tetrahydropyrimidine
derivative.
Many researchers have suggested various ways to synthesize various
tetrahydropyrimidine derivatives in protic solvents or without solvent [12-19].These
compounds can also be synthesized by benzene like aprotic solvents [20]. Some
environmentally benign processes can be employed to synthesize the
tetrahydropyrimidine. This reaction tries in microwave radiation to give the desire
product with good yield in comparison to old method [22-25]. Under different reduction
conditions, dihydropyrimidine are converted into tetrahydropyrimidine derivatives [26].
In recent years, tetrahydropyrimidine-2-thione derivatives obtained important
interest due to their miscellaneous range of biological activity [27]. These compounds are
reported to have calcium antagonist[28-31], anti-inflammatory[32-34], analgesic[35],
antitumor[36] antidepressant[37], antibacterial and antifungal activity[38-40].
Tetrahydropyrimidines are found to be accumulating in a significant amount and induces
thermo tolerance in E.coli[41].
In last few years, some new tetrahydropyrimidine like amidine compounds have
been prepared and checked for muscarinic agonist nactivity in rat brain [42-44]. Some new
Tetrahydro pyrimidine compounds exhibited muscarinic action in rat brain. This type of
products might be helpful in treating Alzheimer’s disease [45]. Chhillar et al. have
synthesized three different tetrahydropyrimidine along with ten dihydropyridine
derivatives and examined their activity against pathogenic strains of Aspergillus
fumigatus and Candida albicans [46].
Chapter:- 3 Tetrahydro pyrimidine derivatives
108
3.2 Biological Activities of pyrimidines:
3.2.1 Antimicrobial activity:
Saundane et.al. synthesised 2- (2', 5' substituted indolideneamino- 3'- yl) - 4, 6-
diaryl pyrimidines (I) and 2 [2', 5'- substitutedindole- 3'- yl) (phenyl azo) methylene
imino]- 4, 6- Diaryl pyrimidine(II) with a view to screening then for their antimicrobial
activity. The compounds were screened for their activity at concentration 1000 µg/ml in
DMF against the gram-Ve bacteria E.Coli and Gram +Ve bacteria S. Aureous by cup
plate method and show antifungal activity against A. niger and A. flavus[47].
NH
N
N
N Ar
C6H5
R
R'NH
N
N
N Ar
C6H5
R
N
N
Ar'
1 2
Figure-3.1
Padamshali et.al.prepared Naptho [2, 1-b] furo [3, 2- a] pyrimidine which were useful in
the preparation of pharmacologically active compound like anti-inflammatory, anti-
anthelmintic, antimicrobial agents [48].
Synthesis of 1, 2, 3, 4- tetrahydro-4- oxo-2- thiobenzo furo [3, 2- d]pyrimidine
was reported by Basavaraja et al and examined for their action against S. Aureus and
E. coli. N- (N- Alkoxy phthalimido)- 4, 6-diaryl- 5, 6 Dihydropyrimidine - 2- Thiones
prepared by Talesara et.al.[49].
Chapter:- 3 Tetrahydro pyrimidine derivatives
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ON
NR
R'
O
NN
NN
O
R
3 4
Figure-3.2
Synthesized 5- [5'- substituted 1, 3, 4 oxadiazol- 2' yl) Dihydropyrimidinon and screened
for their antimicrobial action against S.Aureus and E.Coli using Norfloxacin as standard
antifungal activity was evaluated by using A.Niger and CAalbicans using Grisofulvin
as standard[50].
The antimicrobial action of the selected prepared products was checked by cup
plate process. The in-vitro antimicrobial action was taken against twenty four hrs cell
culture of two bacteria and two fungi. The bacterial strains used were S. Aureus and P.
Aerugenosa. The fungi used were A. Niger and C. Albicans[51].
NH
NH
HN
N
S
O
RN
N
R
R
5 6
Figure-3.3
Chapter:- 3 Tetrahydro pyrimidine derivatives
110
3.2.2 Antiviral activity:-
Abs E1-galil E. amr et al [52] synthesized some pyrimidine like thiazalopyrinidine
and thiopyrimidine compound using 1-(5,6,7,8,-tetrahydro naphthalene-2-yl) ethanone as
starting material for all synthesized compounds and checked their activity in opposition
to HSv-1 virus. Screening of those compounds for anti viral shows good activities and its
very similar to acyclovir as a reference drug. Following compound gave more than 90%
inhibition and calculated to be largely capable activity and compare their antiviral activity
of Acyclovir.
N
N S
OO
CH3
OCH3
OCH3
7
Figure-3.4
Revankar et al [53] synthesized a sequence of Thiazolo [4,5-d] pyrimidine
compound from 5-aminothiazolo-[4,5-d] pyrimidine-2,7 (3H,6H)-dion as a starting
material. Prepared compounds were checked their antiviral activity in opposition to
human cytomegalovirus. Synthesized product 5-amino-3-(4-hydroxybut-2-enyl) thiazolo
[4,5-d] pyrimidine-2,7,(3H,6H)-dione checked their antiviral activity in opposition to
human cytomegalovirus.
Chapter:- 3 Tetrahydro pyrimidine derivatives
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HN
NH2N
O
S
NO
OH
8
Figure-3.5
3.2.3 Anticancer activity:-
Fahmy synthesized a sequence of novel fluorinated thiazole [4,5-d] pyrimidine
product and checked their activity against anti cancer in human tumor cell lines.
Fahmy et al [54] prepared a sequence of new fluorinated thiazolo[4,5-d]pyrimidine
compound and screened their anticancer activity against 60 human tumor cell lines.
Products showed well again anticancer action against tumor cell lines.
HN
NH3C
S
NS
NH
F
F
N
N
S
N S
O
F
N
HF
F9 10
Figure-3.6
Chapter:- 3 Tetrahydro pyrimidine derivatives
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3.3 Current Work
From last 100 years pyrimidine and its derivative were studied because of their
biological activity. The 1, 2, 3, 4-tetrahydropyrimidines have biological activity because
many pharmacological and medicinal application viz: antimicrobial and radio protective.
In keeping different biomedical advantage and with a idea to further consider the
pharmacological report of these class of products, three newly series of N-(2-chloro-4-
(trifluoromethyl)phenyl)-1,2,3,4-tetrahydro-6-isopropyl-4-(substitutedyphenyl)-2-
oxopyrimidine -5-carboxamide (ND- 146 to 190) are synthesized. The synthesis of (ND-
146 to 190) was achieved by acid catalysed cyclocondensation of N-(2-chloro-4-
(trifluoromethyl) phenyl)-4-methyl-3-oxopentanamide, substituted urea and
Benzaldehydes. The products were characterized by proton NMR, carbon NMR, IR, mass
spectra and CHNS analyses. The novel prepared products were tested to various
biological actions like, antimicrobial.etc.
Chapter:- 3 Tetrahydro pyrimidine derivatives
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3.3.1 Reaction scheme
R
H2N
O
NH2
CHO
HN
O O
R
NH
N
X
NH
O
+
ND-146 to ND-160
Conc.HCl
CF3
ClF3C Cl
R1
R=OCH3,CH3,Cl,F,Br......etcR1=H
R
H2N
O
NH2
CHO
HN
O O
R
NH
N
X
NH
O
+
ND-161 to ND-175
Conc.HCl
CF3
ClF3C Cl
R1
R=OCH3,CH3,Cl,F,Br......etcR1=H
R
H2N
O
NH2
CHO
HN
O O
R
NH
N
X
NH
O
+
ND-176 to ND-190
Conc.HCl
CF3
ClF3C Cl
R1
R=OCH3,CH3,Cl,F,Br......etcR1=CH3
X=O
X=S
X=O
CH3
CH3
CH3
CH3
CH3
CH3
CH3
H3C
CH3
H3C
CH3
H3C
Figure-3.7
Chapter:- 3 Tetrahydro pyrimidine derivatives
114
Table 3.1 Physical Data Table of Series-4
TLC Solvent system Rf1:- Hexane: Ethyl acetate – 6:4,
Rf2:- Chloroform: methanol – 9;1.
Code R1 M.F. M.W. M.P.0
C
Yield % Rf1 Rf2
ND-146 2-OCH3 C22H21ClF3N3O3 468 217 62 0.48 0.65
ND-147 3-Cl C21H18Cl2F3N3O2 472 207 68 0.53 0.61
ND-148 2-F C21H18ClF4N3O2 456 203 59 0.49 0.58
ND-149 3,
4DiOCH3
C23H23ClF3N3O4 498 202 60 0.50 0.66
ND-150 4-OCH3 C22H21ClF3N3O3 468 205 65 0.55 0.70
ND-151 4-Cl C21H18Cl2F3N3O2 472 204 67 0.41 0.68
ND-152 4-CH3 C22H21ClF3N3O2 452 211 60 0.59 0.68
ND-153 4-F C21H18ClF4N3O2 456 195 59 0.55 0.71
ND-154 2-Cl C21H18Cl2F3N3O2 472 187 74 0.40 0.75
ND-155 3,4-DiCl C21H17Cl3F3N3O2 506 215 70 0.55 0.70
ND-156 3-OCH3 C22H21ClF3N3O3 468 217 63 0.41 0.69
ND-157 2,4-diCH3 C23H23ClF3N3O2 466 213 57 0.58 0.68
ND-158 4-Br C21H18BrClF3N3O2 517 211 68 0.58 0.65
ND-159 3-Br C21H18BrClF3N3O2 517 187 65 0.49 0.72
ND-160 H C21H19ClF3N3O2 438 203 67 0.57 0.63
Chapter:- 3 Tetrahydro pyrimidine derivatives
115
Table 3.2 Physical Data Table of Series-5
TLC Solvent system Rf1:- Hexane: Ethyl acetate – 6:4,
Rf2:- Chloroform: methanol – 9;1.
Code R1 M.F. M.
W.
M.P.0C Yield % Rf1 Rf2
ND-161 2-OCH3 C22H21ClF3N3O2S 484 205 66 0.44 0.64
ND-162 3-Cl C21H18Cl2F3N3OS 488 210 60 0.43 0.63
ND-163 2-F C21H18ClF4N3OS 472 191 58 0.50 0.70
ND-164 3, 4DiOCH3 C23H23ClF3N3O3S 514 194 71 0.42 0.62
ND-165 4-OCH3 C22H21ClF3N3O2S 484 201 65 0.56 0.66
ND-166 4-Cl C21H18Cl2F3N3OS 488 211 71 0.48 0.58
ND-167 4-CH3 C22H21ClF3N3OS 468 208 63 0.52 0.72
ND-168 4-F C21H18ClF4N3OS 472 199 59 0.59 0.69
ND-169 2-Cl C21H18Cl2F3N3OS 488 189 71 0.54 0.64
ND-170 3,4-DiCl C21H17Cl3F3N3OS 523 195 66 0.52 0.72
ND-171 3-OCH3 C22H21ClF3N3O2S 484 200 70 0.44 0.64
ND-172 2,4-diCH3 C23H23ClF3N3OS 482 203 55 0.40 0.70
ND-173 4-Br C21H18BrClF3N3O S 533 201 68 0.48 0.58
ND-174 3-Br C21H18BrClF3N3O S 533 201 70 0.48 0.58
ND-175 H C21H19ClF3N3OS 454 203 62 0.58 0.58
Chapter:- 3 Tetrahydro pyrimidine derivatives
116
Table 3.3 Physical Data Table of Series-6
TLC Solvent system Rf1:- Hexane: Ethyl acetate – 6:4,
Rf2:- Chloroform: methanol – 9;1.
Code R1 M.F. M.W. M.P.0C Yield % Rf1 Rf2
ND-176 2-OCH3 C23H23ClF3N3O3 482 200 62 0.49 0.58
ND-177 3-Cl C22H20Cl2F3N3O2 486 210 63 0.51 0.61
ND-178 2-F C22H20ClF4N3O2 470 201 66 0.52 0.70
ND-179 3, 4DiOCH3 C24H25ClF3N3O4 512 211 72 0.54 0.71
ND-180 4-OCH3 C23H23ClF3N3O3 482 191 70 0.47 0.75
ND-181 4-Cl C22H20Cl2F3N3O2 486 214 70 0.56 0.65
ND-182 4-CH3 C23H23ClF3N3O2 466 201 68 0.51 0.69
ND-183 4-F C22H20ClF4N3O2 470 175 58 0.49 0.59
ND-184 2-Cl C22H20Cl2F3N3O2 486 186 75 0.48 0.60
ND-185 3,4-DiCl C22H19Cl3F3N3O2 520 215 70 0.52 .067
ND-186 3-OCH3 C23H23ClF3N3O3 482 207 68 0.58 0.75
ND-187 2,4-diCH3 C24H25ClF3N3O2 480 188 58 0.54 0.72
ND-188 4-Br C22H20BrClF3N3O2 531 201 66 0.50 0.68
ND-189 3-Br C22H20BrClF3N3O2 531 190 70 0.49 0.67
ND-190 H C22H21ClF3N3O2 452 189 65 0.42 0.57
Chapter:- 3 Tetrahydro pyrimidine derivatives
117
3.3.2 Plausible Reaction Mechanism
The reaction mechanism of pyrimidine formation can be depicted as under:
H+
+
H+
-H2O
H
OH
+
H2N
H2NX
..
-H2O
-H+
H+
O
O
NH
H
..
O
H H
OH
O+
O
NH
H
OH
H
O+
O
NH
H
H
O
O
NH
H
NH
H2NX
O
O
NH
NH
NH
X
HO
NH
X = O, S
(b) (c)
(d)
(e) (f)
:
+(i)
(ii)
dehydration
ClF3C F3C Cl
F3C Cl F3C Cl
ClF3CClF3C
CH3
H3C
CH3
H3C
CH3
H3C
CH3
H3C
CH3
H3C
CH3
H3C
Figure-3.8
Chapter:- 3 Tetrahydro pyrimidine derivatives
118
3.3.3 Experimental
3.3.3.1 Materials and Methods
Product formed was determined by TLC analysis and all the compounds melting
point were checked. IR, NMR and elemental analysis were done and reported.
3.3.3.2 Synthesis of N-(2-chloro-4-(trifluoro methyl) phenyl)-4-methyl-3-
oxopentanamide.
Syntheses of N-(2-chloro-4-(trifluoro methyl) phenyl)-4-methyl-3-
oxopentanamide were achieved using previously published methods [55].
3.3.3.3 General procedure for the synthesis 1, 2, 3, 4- tetrahydro pyrimidine.
(ND-146 to190)
A mixture of N-(2-chloro-4-(trifluoromethyl)phenyl)-4-methyl-3-oxopentanamide
(0.01 M), Benzaldehydes (0.01 M), urea derivatives and small quantity of HCl in ethyl
alcohol (30 ml) was heat to 80-85°C for 15 to 20 hrs. After that cool the reaction mixture
to 25-35°C and stir for 18-20 hrs. Crude product was crystallizing in ethanol.
Series No. 4 from urea
3.3.3.3.1 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-(2-methoxy) phenyl-6-
(propan-2-yl)-1, 2, 3 ,4-tetrahydropyrimidine-5-carboxamide (ND-146)
Chapter:- 3 Tetrahydro pyrimidine derivatives
119
NH
NH
O
O
NH
ClF3C OCH3
CH3
H3C
Practical yield: 62%; Melting point 217ºC; Molecular formula C22H21ClF3N3O3: Carbon:
56.48; Hydrogen: 4.52; Chlorine: 7.58; Fluorine: 12.18; Nitrogen: 8.98; Oxygen: 10.26.
Obtained : Carbon: 56.38; Hydrogen: 4.42; Chlorine: 7.48; Fluorine: 12.08; Nitrogen:
8.88; Oxygen; 10.16%; IR spectra: 3439 (for N-H), 3013 (For -C-H of Phenyl ring), 2985
(For -CH group), 2855 (for -CH group), 1651 (-C=O carbonyl group), 1597 (C=O cyclic
stretching) 1597 (N-H, pyrimidine ring), 1529 (C=C Phenyl ring stretching), 1475 (C-H,
CH3 group asy-deformation), 1402 (C-H, CH3 group s-deformation of), 1346 (C-N-C
pyrimidine ring stretching), 1274 (C-N, stretching), 1194 (C-O-C, OCH3 stretching),
1064 (C-F, stretching), 1038 (C-O-C, OCH3 stretching) 835 (p-substituted), 682 (C-Cl
stretching); Mass: 468; 1H NMR: δ ppm: 1.47 (s, 3(H),Ha), 1.58 (s, 3(H),Hb), 3.32 (s,
3H,Hc), 3.85 (s, 1H,Hd), 4.83 (s, 1H,He), 7.09-7.11 (d, 1(H),Hf,), 7.27-7.29 (d, 1(H),Hg),
7.38-7.40 (d, 1H,Hh,), 7.43-7.46 (m, 1H,Hi), 7.50-7.54 (m, 1H,Hj), 7.90 (s, 1H,Hk), 7.93-
7.95 (m, 1H,Hl), 8.47-8.50 (m, 1(H), Hm), 8.90 (s, 1(H),Hn), 10.09 (s, 1(H),Ho).
3.3.3.3.2 4-(3-chlorophenyl)-N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-6-(propan-
2-yl)-1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (ND-147)
NH
NH
O
O
NH
ClF3C
Cl
CH3
H3C
Chapter:- 3 Tetrahydro pyrimidine derivatives
120
Practical yield: 68%; Melting point 207ºC; Molecular formula C21H18Cl2F3N3O2: Carbon:
(53.40%) Hydrogen (3.84%) Nitrogen (8.90%) Obtained : Carbon: 53.50; Hydrogen:
3.74; Nitrogen: 8.88 IR spectra: (-C-H Phenyl ring stretching), 2980 (C-H, CH3 group
asy stretching ), 2850 (C-H, CH3 group sym stretching ), 1653 (C=O amide carbonyl
stretching), 1599 (C=O, Cyclic stretching) 1593 (N-H, pyrimidine ring deformation),
1523 (C=C Phenyl ring stretching), 1475 (C-H CH3 group asy deformation), 1401 (C-H,
CH3 group sym deformation), 1345 (C-N-C pyrimidine ring stretching), 1275 (C-N,
stretching), 1067 (C-F, stretching), 837 (p-substituted), 685 (C-Cl, stretching. Mass: 472. 1H NMR δppm: 1.47 (s, 3(H),Ha), 1.58 (s, 3(H),Hb), 3.85 (s, 1(H),Hc), 4.83 (s, 1(H),Hd),
7.09-7.11 (d, 1H,He), 7.27-7.29 (d, 1H,Hf), 7.38-7.40 (d, 1H,Hg,), 7.43-7.46 (m, 1H,Hh),
7.50-7.54 (m, 1(H),Hi), 7.90 (s, 1(H),Hj), 7.93-7.95 (m, 1H,Hk), 8.47-8.50 (m, 1H,Hl),
8.90 (s, 1H,Hm), 10.09 (s, 1H,Hn).
3.3.3.3.3 N-[2-chloro-4-(trifluoro methyl) phenyl]-4-(2-fluorophenyl)-2-oxo-6-(propan-
2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-148)
NH
NH
O
O
NH
ClF3C F
CH3
H3C
Practical yield: 59%; Melting point 203ºC; Molecular formula C21H18ClF4N3O2 Carbon:
(55.33%) Hydrogen (3.98%) Nitrogen (9.22%) Obtained: Carbon: 55.35; Hydrogen:
3.94; Nitrogen: 9.21 IR spectra: 3245, 3140 (N-H, amide stretching), 2970 (C-H Phenyl
ring stretching), 1710 (-C=O carbonyl group), 1070 (For -C-F, group). MS: m/z 456.
3.3.3.3.4 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-(3, 4-dimethoxy)phenyl-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-149)
Chapter:- 3 Tetrahydro pyrimidine derivatives
121
NH
NH
O
O
NH
ClF3C
OCH3
OCH3
CH3
H3C
Practical yield: 60%; Melting point 202ºC; Molecular formula C23H23ClF3N3O4: Carbon:
55.48; Hydrogen: 4.66; Nitrogen: 8.44; Oxygen: 12.85; Obtained : Carbon: 55.28;
Hydrogen: 4.36; Nitrogen: 8.14; Oxygen: 12.45; IR spectra: 3240, 3135 (For -N-H,
group), 2972 (C-H, Phenyl ring stretching), 1712 (For -C=O, carbonyl), 1072 (For -C-F,
stretching). MS: m/z 498.
3.3.3.3.5 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-(4-methoxy) phenyl-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-150)
NH
NH
O
O
NH
ClF3C
OCH3
CH3
H3C
Practical yield: 65%; Melting point 205ºC; Molecular formula C22H21ClF3N3O3: Carbon:
56.48; Hydrogen: 4.52; Nitrogen: 8.98; Oxygen: 10.26; Obtained : Carbon: 56.18;
Hydrogen: 4.22; Nitrogen: 8.58; Oxygen: 10.06%; IR spectra: 3242, 3137 (N-H, amide
stretching), 2971 (C-H, Phenyl ring stretching), 1715 (For -C=O, carbonyl), 1070 (For -
C-F, group) MS: m/z 468.
3.3.3.3. 4-(4-chlorophenyl)-N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-6-(propan-
2-yl)-1, 2, 3, 4-tetrahydropyrimidine-5-carboxamide (ND-151)
Chapter:- 3 Tetrahydro pyrimidine derivatives
122
NH
NH
O
O
NH
ClF3C
Cl
CH3
H3C
Practical yield: 67%; Melting point 204ºC; Molecular formula C21H18Cl2F3N3O2: Carbon:
53.40; Hydrogen: 3.84; Nitrogen: 8.90; Oxygen: 6.78; Obtained : Carbon: 53.60;
Hydrogen: 3.54; Nitrogen, 8.40; Oxygen: 6.48%; IR spectra: 3240, 3133 (For -N-H,
group), 2975 (For -C-H, Phenyl ring), 1712 (For -C=O, carbonyl), 1076 (For -C-F,
group) MS: m/z 472;
3.3.3.3.7 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-(4-methyl) phenyl-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-152)
NH
NH
O
O
NH
ClF3C
CH3
CH3
H3C
Practical yield: 60%; Melting point 211ºC; Molecular formula C22H21ClF3N3O2: Carbon:
58.48; Hydrogen: 4.68; Nitrogen: 9.30; Oxygen: 7.08; Obtained : Carbon: 58.28;
Hydrogen: 4.68; Nitrogen: 9.10; Oxygen: 7.04%; IR spectra: 3238, 3135 (For -N-H,
group), 2972 (For -C-H, Phenyl ring), 1710 (For -C=O, carbonyl), 1075 (For -C-F,
group) MS: m/z 452.
Chapter:- 3 Tetrahydro pyrimidine derivatives
123
3.3.3.3. N-[2-chloro-4-(trifluoro methyl) phenyl]-4-(4-fluorophenyl)-2-oxo-6-(propan-
2-yl)-1, 2, 3, 4 tetrahydro pyrimidine-5-carboxamide (ND-153)
NH
NH
O
O
NH
ClF3C
F
CH3
H3C
Practical yield: 59%; Melting point 195ºC; Molecular formula C21H18ClF4N3O2: Carbon:
55.33; Hydrogen: 3.98; Nitrogen: 9.22; Oxygen: 7.02; Obtained : Carbon: 55.13;
Hydrogen: 3.74; Nitrogen: 9.02; Oxygen: 7.12%; IR spectra: 3239, 3134 (For -N-H,
group), 2976 (For -C-H, Phenyl ring ), 1709 (For -C=O, carbonyl), 1073 (For -C-F,
group) MS: m/z 456.
3.3.3.3.9 4-(2-chlorophenyl)-N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-6-(propan-
2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-154)
NH
NH
O
O
NH
ClF3C Cl
CH3
H3C
Practical yield: 74%; Melting point 187ºC; Molecular formula C21H18Cl2F3N3O2: Carbon:
53.40; Hydrogen: 3.84; Nitrogen: 8.90; Oxygen: 6.78; Obtained : Carbon: 53.12;
Hydrogen: 3.86; Nitrogen: 8.80; Oxygen: 6.72%; IR spectra: 3239, 3134 (For -N-H
Chapter:- 3 Tetrahydro pyrimidine derivatives
124
group), 2976 (For -C-H, Phenyl ring), 1709 (For -C=O, carbonyl), 1073 (For -C-F,
group) MS: m/z 472
3.3.3.3.10 N-[2-chloro-4-(trifluoromethyl) phenyl]-4-(3,4-dichloro phenyl)-2-oxo-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-155)
NH
NH
O
O
NH
ClF3C
Cl
Cl
CH3
H3C
Practical yield: 70%; Melting point 215ºC; Molecular formula C21H17Cl3F3N3O2: Carbon:
49.77; Hydrogen: 3.38; Nitrogen: 8.29; Oxygen: 6.31; Obtained : Carbon: 49.71;
Hydrogen: 3.30; Nitrogen: 8.20; O: 6.26%; IR spectra: 3235, 3130 (For -N-H, group),
2970 (For -C-H, Phenyl ring), 1708 (For -C=O, carbonyl), 1072 (For -C-F, group) MS:
m/z 506.
3.3.3.4.11 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-(3-methoxy) phenyl-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-156)
NH
NH
O
O
NH
ClF3C
OCH3
CH3
H3C
Practical yield: 63%; Melting point 217ºC; Molecular formula C22H21ClF3N3O3: Carbon:
56.48; Hydrogen: 4.52; Nitrogen: 8.98; Oxygen: 10.26. Obtained: Carbon: 56.20;
Chapter:- 3 Tetrahydro pyrimidine derivatives
125
Hydrogen: 4.34; Nitrogen: 8.90; Oxygen: 10.12%; IR spectra: 3236, 3131 (For -N-H,
group), 2976 (For -C-H, Phenyl ring), 1710 (For -C=O, carbonyl), 1073 (For -C-F,
group) MS: m/z 468.
3.3.3.4.12 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-(2, 4-dimethyl) phenyl-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-157)
NH
NH
O
O
NH
ClF3C CH3
CH3
CH3
H3C
Practical yield: 57%; Melting point 213ºC; Molecular formula C23H23ClF3N3O2: Carbon:
59.29; Hydrogen: 4.98; Nitrogen: 9.02; Oxygen: 6.87; Obtained : Carbon: 59.21;
Hydrogen: 4.81; Nitrogen: 9.02; Oxygen: 6.87; IR spectra: 3233, 3130 (For -N-H,
group), 2973 (For -C-H, Phenyl ring), 1712 (For -C=O, carbonyl), 1074 (For -C-F,) MS:
m/z 466.
3.3.3.4.13 4-(4-bromophenyl)-N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-158)
NH
NH
O
O
NH
ClF3C
Br
CH3
H3C
Chapter:- 3 Tetrahydro pyrimidine derivatives
126
Practical yield: 68%; Melting point 211ºC; Molecular formula C21H18BrClF3N3O2:
Carbon: 48.81; Hydrogen: 3.51; Nitrogen: 8.13; Oxygen: 6.19; Obtained : Carbon: 48.80;
Hydrogen: 3.50; Nitrogen: 8.02; Oxygen: 6.10; IR spectra: 3232, 3130 (For -N-H,
group), 2975 (For -C-H, Phenyl ring), 1711 (For -C=O, carbonyl), 1070 (For -C-F,
group) MS: m/z 517.
3.3.3.4.14 4-(3-bromophenyl)-N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-6-
(propan-2-yl)-1, 2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-159)
NH
NH
O
O
NH
ClF3C
Br
CH3
H3C
Practical yield: 65%; Melting point 187ºC; Molecular formula C21H18BrClF3N3O2 :
Carbon: 48.81; Hydrogen: 3.51; Nitrogen: 8.13; Oxygen: 6.19; Obtained : Carbon: 48.72;
Hydrogen: 3.41; Nitrogen: 8.05; Oxygen: 6.01%; IR spectra: 3232, 3130 (For -N-H,
group), 2975 (For -C-H, Phenyl ring), 1711 (For -C=O, carbonyl), 1070 (For -C-F,
group) MS: m/z 517
3.3.3.4.15 N-[2-chloro-4-(trifluoro methyl) phenyl]-2-oxo-4-phenyl-6-(propan-2-yl)-1,
2, 3, 4-tetrahydro pyrimidine-5-carboxamide (ND-160)
NH
NH
O
O
NH
ClF3C
CH3
H3C
Chapter:- 3 Tetrahydro pyrimidine derivatives
127
Practical yield: 67%; Melting point 203ºC; Molecular formula C21H19ClF3N3O2: Carbon:
57.61; Hydrogen: 4.37; Nitrogen: 9.60; Oxygen: 7.31; Obtained : Carbon: 57.45;
Hydrogen: 4.12; Nitrogen: 9.42; Oxygen: 7.12; IR spectra: 3232, 3130 (For -N-H,
group), 2975 (For -C-H, Phenyl ring ), 1711 (For -C=O, carbonyl), 1070 (For -C-F,
group) MS: m/z 438
Series No. 5 from Thiourea
3.3.3.3.16 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(2-methoxy -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-161)
NH
NH
S
O
NH
ClF3C OCH3
CH3
H3C
Practical yield: 66%; Melting point 205ºC; Molecular formula C22H21ClF3N3O2S:
Carbon: 54.60; Hydrogen: 4.37; Chlorine, 7.33; Fluorine, 11.78; Nitrogen: 8.68; Oxygen:
6.61; Sulfur, 6.63; Obtained: Carbon: 54.50; Hydrogen: 4.27; Chlorine, 7.23; Fluorine,
11.68; Nitrogen: 8.58; Oxygen: 6.51; Sulfur, 6.53 %; MS: m/z 484.
3.3.3.3.17 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(3-chloro -phenyl)-2-thioxopyrimidine-5-carboxamide (ND-162)
NH
NH
S
O
NH
ClF3C
Cl
CH3
H3C
Chapter:- 3 Tetrahydro pyrimidine derivatives
128
Practical yield: 60%; Melting point 210ºC; Molecular formula C21H18Cl2F3N3OS:
Carbon: 51.65; Hydrogen: 3.72; Chlorine, 14.52; Fluorine, 11.67; Nitrogen: 8.60;
Oxygen: 3.28; Sulfur, 6.57; Obtained: Carbon: 51.55; Hydrogen: 3.62; Chlorine, 14.42;
Fluorine, 11.57; Nitrogen: 8.50; Oxygen: 3.18; Sulfur, 6.47%; MS: m/z 488.
3.3.3.3.18 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(2-fluorophenyl)-2-thioxo pyrimidine-5-carboxamide (ND-163)
NH
NH
S
O
NH
ClF3C F
CH3
H3C
Practical yield: 58%; Melting point 191ºC; Molecular formula C21H18ClF4N3OS: Carbon:
53.45; Hydrogen: 3.84; Chlorine, 7.51; Fluorine, 16.10; Nitrogen: 8.90; Oxygen: 3.39;
Sulfur, 6.79; Obtained: Carbon: 53.35; Hydrogen: 3.74; Chlorine, 7.41; Fluorine, 16.00;
Nitrogen: 8.80; Oxygen: 3.29; Sulfur, 6.69%; MS: m/z 472.
3.3.3.3.19 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(3,4,-dimethoxyphenyl)-2-thioxo pyrimidine-5-carboxamide (ND-164)
NH
NH
S
O
NH
ClF3C
OCH3
OCH3
CH3
H3C
Chapter:- 3 Tetrahydro pyrimidine derivatives
129
Practical yield: 71%; Melting point 194ºC; Molecular formula C23H23ClF3N3O3S:
Carbon: 53.75; Hydrogen: 4.51; Chlorine, 6.90; Fluorine, 11.09; Nitrogen: 8.18; Oxygen:
9.34; S, 6.24; Obtained : Carbon: 53.55; Hydrogen: 4.41; Chlorine, 6.40; Fluorine, 11.19;
Nitrogen: 8.28; Oxygen: 9.14; Sulfur, 6.04 %; MS: m/z 514.
3.3.3.3.20 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(4-methoxy -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-165)
NH
NH
S
O
NH
ClF3C
OCH3
CH3
H3C
Practical yield: 65%; Melting point 201ºC; Molecular formula C22H21ClF3N3O2S:
Carbon: 54.60; Hydrogen: 4.37; Chlorine, 7.33; Fluorine, 11.78; Nitrogen: 8.68; Oxygen:
6.61; Sulfur, 6.63; Obtained: Carbon: 54.40; Hydrogen: 4.47; Chlorine, 7.23; Fluorine,
11.48; Nitrogen: 8.08; Oxygen: 6.01; Sulfur, 6.03%; MS: m/z 484.
3.3.3.3.21 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(4-chloro -phenyl)-2-thioxopyrimidine-5-carboxamide (ND-166)
Chapter:- 3 Tetrahydro pyrimidine derivatives
130
NH
NH
S
O
NH
ClF3C
Cl
CH3
H3C
Practical yield: 71%; Melting point 211ºC; Molecular formula C21H18Cl2F3N3OS:
Carbon: 51.65; Hydrogen: 3.72; Chlorine, 14.52; Fluorine, 11.67; Nitrogen: 8.60;
Oxygen: 3.28; Sulfur, 6.57; Obtained : Carbon: 51.15; Hydrogen: 3.12; Chlorine, 14.12;
Fluorine, 11.17; Nitrogen: 8.45; Oxygen: 3.41; Sulfur, 6.57%; IR spectra: 3520 (For -N-
H, group), 3101 (For -C-H, Phenyl ring), 2944 (C-H, CH3 group asy stretching), 2841 (C-
H, CH3 group sym stretching), 1658 (C=O, amide carbonyl stretching), 1602 (C=O,
cyclic stretching) 1602 (N-H, pyrimidine ring deformation), 1535 (C=C, Phenyl ring
stretching), 1423 (C-H, CH3 group asy deformation), 1404 (C-H, CH3 group sym
deformation), 1346 (C-N-C pyrimidine ring stretching), 1269/1205 (C-N, stretching),
1081 (C-F, stretching), 680 (C-Cl, starching)MS: m/z 488; 1H NMR δppm: 1.48 (s,
1H,Ha), 1.58 (s, 1H,Hb), 3.86 (m, 1(H),Hc), 4.82-4.83 (s, 1H,Hd), 7.15-7.21 (dd’,
2(H),Hff’ ), 7.44-7.46 (dd’, 2H,Hgg’), 7.61-7.65 (m, 1H,Hh), 7.88 (s, 1H,Hi), 8.47-8.50 (m,
1H,Hj), 8.90 (s, 1H,Hk), 9.93 (s, 1H,Hl).
3.3.3.3.22 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(4-methyl -phenyl)-2-thioxopyrimidine-5-carboxamide (ND-167)
NH
NH
S
O
NH
ClF3C
CH3
CH3
H3C
Chapter:- 3 Tetrahydro pyrimidine derivatives
131
Practical yield: 63%; Melting point 208ºC; Molecular formula C22H21ClF3N3OS: Carbon:
56.47; Hydrogen: 4.52; Chlorine, 7.58; Fluorine, 12.18; Nitrogen: 8.98; Oxygen: 3.42;
Sulfur, 6.85; Obtained: Carbon: 56.37; Hydrogen: 4.33; Chlorine, 7.18; Fluorine, 12.18;
Nitrogen: 8.58; Oxygen: 3.32; Sulfur, 6.45%; MASS: m/z 468.
3.3.3.3.23 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(4-fluoro -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-168)
NH
NH
S
O
NH
ClF3C
F
CH3
H3C
Practical yield: 59%; Melting point 199ºC; Molecular formula C21H18ClF4N3OS: Carbon:
53.45; Hydrogen: 3.84; Chlorine, 7.51; Fluorine, 16.10; Nitrogen: 8.90; Oxygen: 3.39;
Sulfur, 6.79; Obtained: Carbon: 53.25; Hydrogen: 3.44; Chlorine, 7.71; Fluorine, 16.20;
Nitrogen: 8.50; Oxygen: 3.19; Sulfur, 6.70%; MASS: m/z 472.
3.3.3.3.24 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(2-chloro -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-169)
Chapter:- 3 Tetrahydro pyrimidine derivatives
132
NH
NH
S
O
NH
ClF3C Cl
H3C
CH3
Practical yield: 71%; Melting point 189ºC; Molecular formulaC21H18Cl2F3N3OS: Carbon:
51.65; Hydrogen: 3.72; Chlorine, 14.52; Fluorine, 11.67; Nitrogen: 8.60; Oxygen: 3.28;
Sulfur, 6.57; Obtained: Carbon: 51.54; Hydrogen: 3.62; Chlorine, 14.42; Fluorine, 11.57;
Nitrogen: 8.00; Oxygen: 3.08; Sulfur, 6.27%; MASS: m/z 488;
3.3.3.3.25 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(3,4-dichlorophenyl)-2-thioxo pyrimidine-5-carboxamide (ND-170)
NH
NH
S
O
NH
ClF3C
Cl
Cl
CH3
H3C
Practical yield: 66%; Melting point 195ºC; Molecular formula C21H17Cl3F3N3OS:
Carbon: 48.25; Hydrogen: 3.28; Chlorine, 20.34; Fluorine, 10.90; Nitrogen: 8.04;
Oxygen: 3.06; Sulfur, 6.13; Obtained: Carbon: 48.05; Hydrogen: 3.18; Chlorine, 20.30;
Fluorine, 10.40; Nitrogen: 8.01; Oxygen: 3.01; Sulfur, 6.10%; MASS: m/z 523.
Chapter:- 3 Tetrahydro pyrimidine derivatives
133
3.3.3.3.26 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(3-methoxy -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-171)
NH
NH
S
O
NH
ClF3C
OCH3
CH3
H3C
Practical yield: 70%; Melting point 200ºC; Molecular formula C22H21ClF3N3O2S:
Carbon: 54.60; Hydrogen: 4.37; Chlorine, 7.33; Fluorine, 11.78; Nitrogen: 8.68; Oxygen:
6.61; Sulfur, 6.63; Obtained: Carbon: 54.43; Hydrogen: 4.31; Chlorine, 7.30; Fluorine,
11.70; Nitrogen: 8.60; Oxygen: 6.60; Sulfur, 6.60%; MASS: m/z 484.
3.3.3.3.27 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(3.4-dimethylphenyl)-2-thioxo pyrimidine-5-carboxamide (ND-172)
NH
NH
S
O
NH
ClF3C CH3
CH3
CH3
H3C
Practical yield: 55%; Melting point 203ºC; Molecular formulaC23H23ClF3N3OS: Carbon:
57.29; Hydrogen: 4.79; Chorine, 7.35; Fluorine, 11.80; Nitrogen: 8.69; Oxygen: 3.32;
Sulfur, 6.65; Obtained: Carbon: 57.02; Hydrogen: 4.61; Chlorine, 7.16; Fluorine, 11.54;
Nitrogen: 8.12; Oxygen: 3.02; Sulfur, 6.45%; MASS: m/z 482.
Chapter:- 3 Tetrahydro pyrimidine derivatives
134
3.3.3.3.28 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(4-bromo -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-173)
NH
NH
S
O
NH
ClF3C
Br
CH3
H3C
Practical yield: 68%; Melting point 201ºC; Molecular formula C21H18BrClF3N3OS:
Carbon: 47.34; Hydrogen: 3.41; Bromine, 15.00; Chlorine, 6.65; Fluorine, 10.70;
Nitrogen: 7.89; Oxygen: 3.00; Sulfur, 6.02; Obtained: Carbon: 47.14; Hydrogen: 3.21;
Bromine, 14.40; Chlorine, 6.65; Fluorine, 10.60; Nitrogen: 7.49; Oxygen: 2.98; Sulfur,
5.87%; MASS: m/z 533.
3.3.3.3.29 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(3-bromo -phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-174)
NH
NH
S
O
NH
ClF3C
Br
CH3
H3C
Practical yield: 70%; Melting point 201ºC; Molecular formula C21H18BrClF3N3OS:
Carbon: 47.34; Hydrogen: 3.41; Bromine, 15.00; Chlorine, 6.65; Fluorine, 10.70;
Nitrogen: 7.88; Oxygen: 2.99; Sulfur, 6.02; Obtained: Carbon: 47.24; Hydrogen: 3.11;
Bromine, 15.10; Chlorine, 6.45; Fluorine, 10.50; Nitrogen: 7.79; Oxygen: 2.98; Sulfur,
5.98%; MASS: m/z 533.
Chapter:- 3 Tetrahydro pyrimidine derivatives
135
3.3.3.3.30 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 4-tetrahydro-6-isopropyl-4-
(phenyl)-2-thioxo pyrimidine-5-carboxamide (ND-175)
NH
NH
S
O
NH
ClF3C
CH3
H3C
Practical yield: 62%; Melting point 203ºC; Molecular formula C21H19ClF3N3OS: Carbon:
55.57; Hydrogen: 4.22; Chlorine, 7.81; Fluorine, 12.56; Nitrogen: 9.26; Oxygen: 3.52;
Sulfur, 7.06; Obtained: Carbon: 55.54; Hydrogen: 4.12; Chlorine, 7.71; Fluorine, 12.56;
Nitrogen: 9.16; Oxygen: 3.42; Sulfur, 7.02%; MASS: m/z 454.
Series No 6 from N- methyl Urea
3.3.3.3.31 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(2-methoxy -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-176)
N
NH
O
O
NH
ClF3C OCH3
CH3
CH3
H3C
Practical yield: 62%; Melting point 200ºC; Molecular formula C23H23ClF3N3O3: Carbon:
57.31; Hydrogen: 4.80; Chlorine, 7.35; Fluorine, 11.82; Nitrogen: 8.71; Oxygen: 9.96;
Obtained: Carbon: 57.31; Hydrogen: 4.81; Chlorine, 7.36; Fluorine, 11.83; Nitrogen:
8.72; Oxygen: 9.96%; MASS: m/z 482.
Chapter:- 3 Tetrahydro pyrimidine derivatives
136
3.3.3.3.32 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(3-chloro -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-177)
N
NH
O
O
NH
ClF3C
Cl
CH3
CH3
H3C
Practical yield: 63%; Melting point 210ºC; Molecular formula C22H20Cl2F3N3O2:
Carbon: 54.33; Hydrogen: 4.15; Chlorine, 14.58; Fluorine, 11.72; Nitrogen: 8.64;
Oxygen: 6.58; Obtained: Carbon: 54.33; Hydrogen: 4.15; Chlorine, 14.58; Fluorine,
11.72; Nitrogen: 8.64; Oxygen: 6.58%; MASS: m/z 486.
3.3.3.3.33 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3,6-tetrahydro-4-isopropyl-6-
(2-fluoro -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-178)
N
NH
O
O
NH
ClF3C F
CH3
CH3
H3C
Practical yield: 66%; Melting point 201ºC; Molecular formula C22H20ClF4N3O2: Carbon:
56.24; Hydrogen: 4.29; Chlorine, 7.55; Fluorine, 16.17; Nitrogen: 8.94; Oxygen: 6.81;
Obtained: Carbon: 56.24; Hydrogen: 4.29; Chlorine, 7.55; Fluorine, 16.17; Nitrogen:
8.94; Oxygen: 6.81%; MASS: m/z 470.
Chapter:- 3 Tetrahydro pyrimidine derivatives
137
3.3.3.3.34 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(3,4-di-methoxyphenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-179)
N
NH
O
O
NH
ClF3C
OCH3
OCH3
CH3
CH3
H3C
Practical yield: 72%; Melting point 211ºC; Molecular formula C24H25ClF3N3O4: Carbon:
56.31; Hydrogen: 4.92; Chlorine, 6.93; Fluorine, 11.13; Nitrogen: 8.21; Oxygen: 12.50;
Obtained: Carbon: 56.31; Hydrogen: 4.92; Chlorine, 6.93; Fluorine, 11.13; Nitrogen:
8.21; Oxygen: 12.50%; MASS: m/z 512.
3.3.3.3.35 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(4-methoxy -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-180)
N
NH
O
O
NH
ClF3C
OCH3
CH3
CH3
H3C
Practical yield: 70%; Melting point 191ºC; Molecular formula C23H23ClF3N3O3: Carbon:
57.31; Hydrogen: 4.80; Chlorine, 7.35; Fluorine, 11.81; Nitrogen: 8.71; Oxygen: 9.96;
Obtained: Carbon: 55.34; Hydrogen: 4.13; Chlorine, 7.75; Fluorine, 12.24; Nitrogen:
9.12; Oxygen: 10.42%; MASS: m/z 482.
Chapter:- 3 Tetrahydro pyrimidine derivatives
138
3.3.3.3.36 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(4-chloro -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-181)
N
NH
O
O
NH
ClF3C
Cl
CH3
CH3
H3C
Practical yield: 70%; Melting point 214ºC; Molecular formula C22H20Cl2F3N3O2: Carbon:
54.33; Hydrogen: 4.15; Chlorine, 14.58; Fluorine, 11.72; Nitrogen: 8.64; Oxygen: 6.58;
Obtained : Carbon: 54.33; Hydrogen: 4.15; Chlorine, 14.58; Fluorine, 11.72; Nitrogen:
8.64; O: 6.58%; IR spectra: 3471 (For -N-H, group), 3057 (For -C-H Phenyl ring), 2980
(C-H, CH3 group), 2852 (C-H, CH3 group), 1716 (For -C=O, carbonyl), 1654 (For -C=O,
group) 1600 (N-H, pyrimidine ring deformation), 1537 (C=C, Phenyl ring stretching),
1496 (C-H, CH3 group asym deformation), 1396 (C-H, CH3 group sym deformation),
1346 (C-N-C pyrimidine ring stretching), 1274 (C-N, stretching), 1066 (C-F, stretching),
742 (C-Cl, starching). MASS: m/z 486; 1H NMR δppm: 1.50 (s, 3(H),Ha), 1.66 (s,
3H,Hb), 2.26 (s, 3H,Hc), 3.90 (m, 1(H),Hc), 4.90-4.91 (s, 1H,Hd), 7.12-7.15 (dd’,
2(H),Hff’ ), 7.28-7.30 (dd’, 2(H),Hgg’), 7.36-7.38 (dd’, 1H,Hh), 7.43-7.45 (m, 1H,Hi), 7.47-
7.49 (m, 1H,Hj), 9.10 (s, 1H,Hk), 9.75 (s, 1H,Hl).
3.3.3.3.37 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(4-methyl -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-182)
Chapter:- 3 Tetrahydro pyrimidine derivatives
139
N
NH
O
O
NH
ClF3C
CH3
CH3
CH3
H3C
Practical yield: 68%; Melting point 201ºC; Molecular formula C23H23ClF3N3O2: Carbon:
59.29; Hydrogen: 4.98; Chlorine, 7.61; Fluorine, 12.23; Nitrogen: 9.01; Oxygen: 6.87;
Obtained: Carbon: 59.29; Hydrogen: 4.98; Chlorine, 7.61; Fluorine, 12.23; Nitrogen:
9.02; Oxygen: 6.87%; MASS: 466.
3.3.3.3.38 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(4-fluoro -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-183)
N
NH
O
O
NH
ClF3C
F
CH3
CH3
H3C
Practical yield: 58%; Melting point 175ºC; Molecular formula C22H20ClF4N3O2: Carbon:
56.24; Hydrogen: 4.29; Chlorine, 7.55; Fluorine, 16.17; Nitrogen: 8.94; Oxygen: 6.81;
Obtained: Carbon: 56.24; Hydrogen: 4.29; Chlorine, 7.55; Fluorine, 16.17; Nitrogen:
8.94; Oxygen: 6.81%; MASS: m/z 470.
Chapter:- 3 Tetrahydro pyrimidine derivatives
140
3.3.3.3.39 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(2-chloro -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-184)
N
NH
OH3C
O
NH
ClF3C Cl
CH3
Practical yield: 75%; Melting point 186ºC; Molecular formula C22H20Cl2F3N3O2: Carbon:
54.33; Hydrogen: 4.15; Chlorine, 14.58; Fluorine, 11.72; Nitrogen: 8.64; Oxygen: 6.58;
Obtained : Carbon: 54.33; Hydrogen: 4.15; Chlorine, 14.58; Fluorine, 11.72; Nitrogen:
8.64; Oxygen: 6.58%; MASS: m/z 486;
3.3.3.3.40 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(3, 4-dichlorophenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-185)
N
NH
O
O
NH
ClF3C
Cl
Cl
CH3
CH3
H3C
Practical yield: 70%; Melting point 215ºC; Molecular formulaC20H15Cl3F3N3O2: Carbon:
50.74; Hydrogen: 3.68; Chlorine, 20.42; Fluorine, 10.94; Nitrogen: 8.06; Oxygen: 6.14
Obtained: Carbon: 50.74; Hydrogen: 3.68; Chlorine, 20.42; Fluorine, 10.94; Nitrogen:
8.05; Oxygen: 6.14%; MASS: m/z 520.
3.3.3.4.41 N-(2-chloro-4-(trifluoromethyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(3-methoxy -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-186)
Chapter:- 3 Tetrahydro pyrimidine derivatives
141
N
NH
O
O
NH
ClF3C
OCH3
CH3
CH3
H3C
Practical yield: 68%; Melting point 207ºC; Molecular formula C21H19ClF3N3O3: Carbon:
57.31; Hydrogen: 4.80; Chlorine, 7.35; Fluorine, 11.82; Nitrogen: 8.72; Oxygen: 9.96;
Obtained: Carbon: 57.32; Hydrogen: 4.81; Chlorine, 7.36; Fluorine, 11.83; Nitrogen:
8.72; Oxygen: 9.96%; MASS: m/z 482.
3.3.3.4.42 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(2, 4-dimethylphenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-187)
N
NH
O
O
NH
ClF3C CH3
CH3
CH3
CH3
H3C
Practical yield: 58%; Melting point 188ºC; Molecular formula C22H21ClF3N3O2: Carbon:
60.06; Hydrogen: 5.25; Chlorine, 7.39; Fluorine, 11.88; Nitrogen: 8.76; Oxygen: 6.67;
Obtained: Carbon: 60.06; Hydrogen: 5.25; Chlorine, 7.39; Fluorine, 11.88; Nitrogen:
8.76; Oxygen: 6.67%; MASS: m/z 480.
3.3.3.4.43 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(4-bromo -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-188)
Chapter:- 3 Tetrahydro pyrimidine derivatives
142
N
NH
O
O
NH
ClF3C
Br
CH3
CH3
H3C
Practical yield: 66%; Melting point 201ºC; Molecular formula C20H16BrClF3N3O2:
Carbon: 49.78; Hydrogen: 3.80; Bromine, 15.05; Chlorine, 6.68; Fluorine, 10.74;
Nitrogen: 7.92; Oxygen: 6.03; Obtained: Carbon: 49.78; Hydrogen: 3.80; Bromine,
15.05; Chlorine, 6.68; Fluorine, 10.74; Nitrogen: 7.92; Oxygen: 6.03%; MASS: m/z 531.
3.3.3.4.44 N-(2-chloro-4-(trifluoro methyl) phenyl)-1, 2, 3, 6-tetrahydro-4-isopropyl-6-
(3-bromo -phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-189)
N
NH
O
O
NH
ClF3C
Br
CH3
CH3
H3C
Practical yield: 70%; Melting point 190ºC; Molecular formula C20H16BrClF3N3O2:
Carbon: 49.78; Hydrogen: 3.80; Bromine, 15.05; Chlorine, 6.68; Fluorine, 10.74;
Nitrogen: 7.92; Oxygen: 6.03; Obtained: Carbon: 49.78; Hydrogen: 3.80; Bromine,
15.05; Chlorine, 6.68; Fluorine, 10.74; Nitrogen: 7.92; Oxygen: 6.03%; MASS: m/z 531.
3.3.3.4.45 N-(2-chloro-4-(trifluoromethyl) phenyl)-1,2,3,6-tetrahydro-4-isopropyl-6-
(phenyl)-1-methyl-2-oxopyrimidine-5-carboxamide (ND-190)
Chapter:- 3 Tetrahydro pyrimidine derivatives
143
N
NH
O
O
NH
ClF3C
CH3
CH3
H3C
Practical yield: 65%; Melting point 189ºC; Molecular formula C20H17ClF3N3O2: Carbon:
58.47; Hydrogen: 4.67; Chlorine, 7.84; Fluorine, 12.61; Nitrogen: 9.30; Oxygen: 7.08;
Obtained: Carbon: 58.48; Hydrogen: 4.68; Chlorine, 7.85; Fluorine, 12.61; Nitrogen:
9.30; Oxygen: 7.08%; MASS: m/z 452.
3.4 Spectral discussion
3.4.1 Mass spectral study
Mass analysis was performed on GCMS with DIPT. Systematic fragmentation pattern
was observed in mass spectral analyses. Base peak was obtained at mol.wt of compound.
Mass fragmentation pattern for a representative compound of each series is depicted
below.
Chapter:- 3 Tetrahydro pyrimidine derivatives
144
Mass fragmentation pattern for ND-146
m/z =433
m/z =468
NH
NH
O
O
NH
ClF3C OCH3
NH
NH
O
O
NH
ClF3C
NH
NH
O
O
NH
F3C OCH3
NH
NH
O
O
NH
ClOCH3
NH
NH
O
O
NH
F3C
NH
NH
OH3C
O
NHNH
NH
OH3C
O
H2N
OCH3NH
NH
O
O
H2N
OCH3
NH
NH
O
OCH3
NH
NH
O
NH
NH
O
NH
NH
O
O
NH
ClOCH3
m/z =468 m/z =438
m/z =386
m/z =400
m/z =389
m/z =307m/z =261m/z =247
m/z =204
m/z =174
m/z =98
CH3
H3C
NH
NH
O
O
NH
ClF3C OCH3
CH3
H3C
CH3
H3C
CH3
H3C
CH3
CH3
H3C
CH3
Figure-3.9
Chapter:- 3 Tetrahydro pyrimidine derivatives
145
Mass fragmentation pattern for ND-166
m/z =419
m/z =486
NH
NH
S
O
NH
ClF3C
NH
NH
S
O
NH
ClF3C
NH
NH
S
O
NH
F3C
NH
NH
S
O
NH
Cl
NH
NH
S
O
NH
F3C
NH
NH
SH3C
O
NH
NH
NH
SH3C
O
H2N
NH
NH
S
O
H2N
NH
NH
S
NH
NH
S
NH
NH
S
NH
NH
S
O
NH
Cl
m/z =486 m/z =456
m/z =406
m/z =420
m/z =417
m/z =325
m/z =282m/z =268
m/z =225
m/z =192
m/z =116
CH3
H3C
NH
NH
S
O
NH
ClF3C
CH3
H3C
CH3
H3C
CH3
H3C
CH3
CH3
H3C
CH3
Cl
Cl
Cl
Cl
Cl
Cl
Cl
Figure-3.10
Chapter:- 3 Tetrahydro pyrimidine derivatives
146
Mass fragmentation pattern for ND-181
m/z =452
m/z =486
N
NH
O
O
NH
ClF3C
N
NH
O
O
NH
ClF3C
N
NH
O
O
NH
F3C
N
NH
O
O
NH
Cl
N
NH
OH3C
O
NH
N
NH
OH3C
O
H2N
OCH3N
NH
O
O
H2N
OCH3
N
NH
O
N
NH
O
NH
NH
O
NH
NH
O
O
NH
Cl
m/z =486 m/z =452
m/z =390
m/z =414
m/z =321
m/z =310m/z =296
m/z =223
m/z =188
m/z =98
CH3
H3C
N
NH
O
O
NH
ClF3C
CH3
H3C
CH3
H3C
CH3
H3C
CH3
CH3
H3C
CH3
CH3
CH3
CH3
CH3
CH3
CH3
CH3
CH3
CH3
Cl
Cl
Cl
Cl
Cl
ClCl
Cl
Figure-3.11
Chapter:- 3 Tetrahydro pyrimidine derivatives
147
3.4.2 IR spectral study
Infrared spectra were record on Shimadzu IR-8400 model using potassium bromide pellet
method. Various functional groups present in molecule were identified by characteristic
frequency obtained for them. For Tetrahydro pyrimidines ND-146 to 190, confirmatory
bands for secondary amine and amidic carbonyl groups was at 3450-3200 and 1715-1600
correspondingly. Another characteristic C-N-C (pyrimidine ring stretching) was observed
at 1360- 1300 cm-1, which suggested formation of desired products.
3.4.3 1H NMR spectral study
1H NMR analysis was reported and it’s done in Dimethyl sulfoxide-d6 solution on a
bruker Ac 400 MHz instrument. Tetra methyl silane as a standard. Number of protons
and their chemical shifts were found to confirm the compound was form.1H NMR
spectra confirmed the structures of Tetrahydro pyrimidines ND- 146 to 190 on the basis
of following signals: a singlet for the methane proton of pyrimidine ring at 5.90-4.30 δ
ppm, and singlets for N-H of primidine at 7.80-9.60 δ ppm and amide group protons at
9.10-10.32 δ ppm, respectively. The aromatic ring protons and J value were found to be
in accordance with substitution pattern on phenyl ring.
Chapter:- 3 Tetrahydro pyrimidine derivatives
148
IR spectrum of ND - 146
Figure-3.12
Mass spectrum of ND -146
Figure-3.13
Chapter:- 3 Tetrahydro pyrimidine derivatives
149
1H NMR spectrum of ND - 146
Figure-3.14
Expanded 1H NMR spectrum of ND - 146
Figure-3.15
Chapter:- 3 Tetrahydro pyrimidine derivatives
150
IR spectrum of ND -166
Figure-3.16
Mass spectrum of ND - 166
Figure-3.17
Chapter:- 3 Tetrahydro pyrimidine derivatives
151
1H NMR spectrum of ND- 166
Figure-3.18
Expanded 1H NMR spectrum of ND - 166
Figure-3.19
Chapter:- 3 Tetrahydro pyrimidine derivatives
152
IR spectrum of ND - 181
Figure-3.20
Mass spectrum of ND - 181
Figure-3.21
Chapter:- 3 Tetrahydro pyrimidine derivatives
153
1H NMR spectrum of ND - 181
Figure-3.22
Expanded 1H NMR spectrum of ND -181
Figure-3.23
Chapter:- 3 Tetrahydro pyrimidine derivatives
154
3.5 Biological evaluation
3.5.1 Antimicrobial evaluation
Activity of compound confirm against bacteria like grampositive and gram
negative. In gram positive includes staphylococcus aureus, streptococcus pyogenes and
for gram negative Escherichia coli, pseudomonas aeruginosa. For anti fungal activity
yeast including candida and asperginosa clavatus is used. Amplicilline and
chloramphenicol are used for antibiotic. Reference anti fungal drug fluconazole used for
comparization of antifungal activity. Summary of the antimicrobial activity in Table 2.4.
From the result of antifungal data, compounds 3e, 3f were active against
C.albicans. while compounds 3c, 3h, 3f, 3n were active against A.clavatus. Further in
Antibacterial study shows compounds 3f, 3g, 3o were active against S.aures and
compounds 3a, 3c, 3i, 3j shows activity against S.pyrogenes. In case of E.coli compounds
3h, 3i, 3m, 3n, 3o shows good activity while in case of P.aeruginosh compounds 3a, 3e,
3l, 3o shows good activity. Other compounds did not show any hopeful activity against
tested bacteria and fungi.
Minimal Inhibition Concentration [MIC]:-
Method: ‘Broth Dilution Method’
Advantage:
1. For primary and secondary screening, serial dilutions were prepared.
2. The control tube contain no antibiotic is instantly sub cultured through dispersion
a loopful uniformly, proper for the increase of the test organism and plant for
store at 36 0C during the night.
3. To check the accuracy of the drug concentrations is interpret by the MIC of the
control organism
4. MIC record the lowest concentration inhibiting growth of the organism.
Chapter:- 3 Tetrahydro pyrimidine derivatives
155
5. The total expansion of the control tube prior to storage is compare.
Methods used for primary and secondary screening: -
Synthesized compound was diluted to 2000 µg mL-1 concentration as a stock
solution. Size for inoculums test, strain was adjusted to 108 colony forming unit per
milliliter for compare the turbidity.
Primary screen: - Concentration for primary screening of all synthesized compound were
(1) 1000 µg mL-1 (2) 500 µg mL-1 and (3) 250 µg mL-1.If active compound found in
primary test it was further tested in a second set of dilution against all microorganisms.
Secondary screen: - The compound found active in primary test were similarly diluted to
(1) 200 µg mL-1(2) 100 µg mL-1 (3) 50 µg mL-1, (4) 25 µg mL-1(5) 12.5 µg mL-1 and (6)
6.250 µg mL-1 concentrations.
Reading Result: - The maximum dilution shows at least 99 % inhibition zone is taken as
IC. The result of this is much depended on the size of the inoculums. The mixture for test
should have 108 organism/ml.
Table 3.4. The results obtained from antimicrobial susceptibility testing.
Compound No.
Zone of inhibition (in mm)
Antibacterial activity Antifungal activity
Gram +ve Gram -ve C. albicans
A.clavatus S.
aureus S.
pyrogenes E.
coli P.
aeruginosa
ND-146 15 NA 17 12 21 09
ND-147 23 05 09 16 16 11 ND-148 16 13 11 13 15 17 ND-149 11 22 24 09 16 24 ND-150 12 19 23 08 17 18 ND-151 13 11 20 10 19 23 ND-152 22 10 19 09 15 16 ND-153 20 17 16 12 22 16
Chapter:- 3 Tetrahydro pyrimidine derivatives
156
ND-154 19 15 10 06 25 19 ND-155 16 14 14 05 17 18 ND-156 21 09 16 08 17 24 ND-157 10 17 19 13 19 23 ND-158 11 14 12 11 18 16 ND-159 09 10 11 14 15 08 ND-160 18 13 14 21 14 09 ND-161 11 12 15 11 22 09 ND-162 12 10 20 11 23 10 ND-163 13 11 18 13 15 16 ND-164 14 14 19 11 18 23 ND-165 12 13 18 12 19 18 ND-166 13 11 21 10 17 22 ND-167 17 09 20 09 16 19 ND-168 12 10 18 10 09 10 ND-169 11 10 11 13 25 17 ND-170 10 13 14 15 24 15 ND-171 12 12 13 12 17 14 ND-172 15 14 11 11 19 24 ND-173 13 11 19 09 18 25 ND-174 14 19 13 10 19 18 ND-175 18 13 19 19 13 19 ND-176 15 17 20 16 21 23 ND-177 17 18 19 13 18 20 ND-178 14 13 17 19 19 20 ND-179 13 14 15 16 21 18 ND-180 16 18 12 17 12 19 ND-181 15 19 19 17 15 20 ND-182 17 15 21 15 17 23 ND-183 18 17 18 16 21 20 ND-184 18 17 16 18 23 23 ND-185 16 17 16 21 23 17 ND-186 16 16 14 15 21 17 ND-187 16 19 16 17 21 24 ND-188 17 17 17 18 21 22 ND-189 19 04 12 10 20 13 ND-190 16 18 17 19 19 22
Amplicilline 18 19 20 20 - - Chloramphenicol 21 20 23 21 - -
Fluconazole - - - - 24 24
Chapter:- 3 Tetrahydro pyrimidine derivatives
157
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