· XLS file · Web view2007-02-23 · TAIR6 annotation TagsAndSearchTerms Example references...

Supplementary Table 2:

Example references associated with seed maturation, dormancy and germination (Example References worksheet).

Tag and search terms used for TAGGIT workflow analysis (TagsAndSearchTerms worksheet)

TAIR6 annotation of AGI codes used in TAGGIT workflows, derived for functional catagories from literature search (TAIR6 annotation worksheet).

Example references associated with seed maturation, dormancy and germination (Example References worksheet).

Tag and search terms used for TAGGIT workflow analysis (TagsAndSearchTerms worksheet)


Process

Dormancy related

Germination related

ABA

Example references associated with developmental stage classifications for specific biological processes associated with seed maturation, dormancy and germination

Auxin

BR

Cytokinin

Ethylene

GA

Jasmonic acid

Late Embryogenesis

Protein degradation

Heat shock

Cell wall modification

Cytoskeleton/cell cycle related

Translation

DNA repair

Respiration, energy generation

Beta oxidation

Stress

Photosynthesis

Sub process/category:

Galactinol synthase

SNF1 related protein kinase-like protein

Peroxidase

Phytochromes

Phytochrome signal transduction

Abscisic Acid (ABA)

ABA metabolism

ABA regulated

ABA signal transduction

Vacuolar H+-ATPase (vacuolar H+-transporting ATPase 16K chain)

Auxin/tryptophan synthesis

Auxin regulated genes

Auxin-related, Transport etc

Brassinosteroid synthesis

Brassinosteroid signal transduction

Ethylene synthesis

Ethylene signal transduction

Ethylene Response

Gibberellin synthesis

Gibberellin signal transduction

Storage proteins, including LEAs

Oleosins

Seed maturation-related

Dehydrins

Peroxiredoxin

Pectin methyl esterase

Expansins

Endo-beta Mannanase

Alpha mannosidase

Beta Glucanase

Beta Galactosidase

Alpha Galactosidase

xyloglucan endotransglycosylase

Cyclin

Actin

Polygalacturonase/ Polygalacturonase inhibiting protein

Tubulin

References:

Dyer WE. 1993. Dormancy-Associated Embryonic Messenger-RNAs and Proteins In Imbibing Avena fatua Caryopses. Physiologia Plantarum 88, 201-211.

Downie, B. et al. Expression of a GALACTINOL SYNTHASE gene in tomato seeds is up- regulated before maturation desiccation and again after imbibition whenever radicle protrusion is prevented. Plant Physiol. 131, 1347-1359 (2003).Cooley, M. B. et al. Vacuolar H+-ATPase is expressed in response to gibberellin during tomato seed germination. Plant Physiology 121, 1339-1347 (1999).radford, K. J. et al. Abscisic acid and gibberellin differentially regulate expression of genes of the SNF1-related kinase complex in tomato seeds. Plant Physiology 132, 1560-1576 (2003).

Morohashi, Y. Peroxidase activity develops in the micropylar endosperm of tomato seeds prior to radicle protrusion. Journal Of Experimental Botany 53, 1643-1650 (2002).

Yamaguchi, S., Smith, M. W., Brown, R. G. S., Kamiya, Y. & Sun, T. P. Phytochrome regulation and differential expression of gibberellin 3 beta-hydroxylase genes in germinating Arabidopsis seeds. Plant Cell 10, 2115-2126 (1998).Oh, E. et al. PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell 16, 3045-3058 (2004).Brocard-Gifford, I. M., Lynch, T. J. & Finkelstein, R. R. Regulatory networks in seeds integrating developmental, abscisic acid, sugar, and light signaling. Plant Physiology 131, 78-92 (2003).

Léon-Kloosterziel, K.M. et al. Isolation and Characterization Of Abscisic Acid-Deficient Arabidopsis Mutants At Two New Loci. Plant J. 10, 655-661 (1996).

Parcy, F. & Giraudat, J. Interactions between the ABI1 and the ectopically expressed ABI3 genes in controlling abscisic acid responses in Arabidopsis vegetative tissues. Plant J. 11, 693-702 (1997).

Giraudat, J. et al. Isolation of the Arabidopsis Abi3 gene by positional cloning. Plant Cell 4, 1251-1261 (1992).

Bender, J. & Fink, G.R. A Myb homologue, ATR1, activates tryptophan gene expression in Arabidopsis. Proc. Natl. Acad. USA 95, 5655-5660 (1998).

Blilou, I. et al. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433, 39-44 (2005).Steber, C. M. & McCourt, P. A role for brassinosteroids in germination in Arabidopsis. Plant Physiology 125, 763-769 (2001).Steber, C. M. & McCourt, P. A role for brassinosteroids in germination in Arabidopsis. Plant Physiology 125, 763-769 (2001).Riefler M, Novak O, Strnad M, Schmulling T. 2006. Arabidopsis cytokinin receptor mutants reveal functions in shoot growth, leaf senescence, seed size, germination, root development, and cytokinin metabolism. Plant Cell 18, 40-54.

Koornneef, M. & van der Veen, J. H. Induction and analysis of gibberellin-sensitive mutants in Arabidopsis thaliana. (L.) Heynh. Theoretical and Applied Genetics 58, 258-263 (1980).Lee, S. C. et al. Gibberellin regulates Arabidopsis seed germination via RGL2, a GAI/RGA-like gene whose expression is up-regulated following imbibition. Genes & Development 16, 646-658 (2002).Theodoulou, F.L., Job, K., Slocombe, S.P., Footitt, S., Holdsworth, M., Baker, A., Larson, T.R. and Graham, I.A. (2005) Jasmonoic acid levels are reduced in COMATOSE ATP-binding cassette transporter mutants. Implications for transport of jasmonate precursors into peroxisomes. Plant Physiology, 137, 835-840.

Carles, C. et al. Regulation of Arabidopsis thaliana Em genes: role of ABI5. Plant J. 30, 373-383 (2002).

Napier, J.A., Beaudoin, F., Tatham, A.S., Alexander, L.G. & Shewry, P.R. in Advances In Botanical Research, Vol 35, Vol. 35 111-138 (2001).Parcy, F. et al. Regulation Of Gene Expression Programs During Arabidopsis Seed Development- Roles Of the Abi3 Locus and Of Endogenous Abscisic Acid. Plant Cell 6, 1567-1582 (1994).Rajjou, L. et al. The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination. Plant Physiology 134, 1598-1613 (2004).Aalen, R.B. Peroxiredoxin antioxidants in seed physiology. Seed Sci. Res. 9, 285-295 (1999).

Cercos, M., Urbez, C. & Carbonell, J. A serine carboxypeptidase gene (PsCP), expressed in early steps of reproductive and vegetative development in Pisum sativum, is induced by gibberellins. Plant Molecular Biology 51, 165-174 (2002).

Wehmeyer, N., Hernandez, L. & Vierling, E. Small Heat-Shock Proteins Are Expressed During Normal Seed Development In Arabidopsis. Plant Physiology 108, 96-96 (1995).Ren, C. W. & Kermode, A. R. An increase in pectin methyl esterase activity accompanies dormancy breakage and germination of yellow cedar seeds. Plant Physiology 124, 231-242 (2000).Chen, F. & Bradford, K. J. Expression of an expansin is associated with endosperm weakening during tomato seed germination. Plant Physiology 124, 1265-1274 (2000).Bewley, J. D. Breaking down the walls - a role for endo-beta-mannanase in release from seed dormancy? Trends in Plant Science 2, 464-469 (1997).Corchete P, Guerra H, Nicolas G. 1983. Beta-Galactosidase And Alpha-Mannosidase Activities In Lens-Culinaris - Isolation And Changes During Germination. International Journal Of Biochemistry 15, 427-431.Wu, C. T., Leubner-Metzger, G., Meins, F. & Bradford, K. J. Class I beta-1,3-glucanase and chitinase are expressed in the micropylar endosperm of tomato seeds prior to radicle emergence. Plant Physiology 126, 1299-1313 (2001).Corchete MP, Guerra H. 1987. Alpha-Galactosidase And Beta-Galactosidase Activities In Protein Bodies And Cell-Walls Of Lentil Seed Cotyledons. Phytochemistry 26, 927-932.Mo, B. & Bewley, J. D. The relationship between beta-mannosidase and endo-beta- mannanase activities in tomato seeds during and following germination: a comparison of seed populations and individual seeds. Journal Of Experimental Botany 54, 2503-2510 (2003).Sitrit, Y., Hadfield, K. A., Bennett, A. B., Bradford, K. J. & Downie, A. B. Expression of a polygalacturonase associated with tomato seed germination. Plant Physiology 121, 419-428 (1999).Chen, F., Nonogaki, H. & Bradford, K. J. A gibberellin-regulated xyloglucan endotransglycosylase gene is expressed in the endosperm cap during tomato seed germination. Journal of Experimental Botany 53, 215-223 (2002).

Barroco RM, Van Poucke K, Bergervoet JHW, De Veylder L, Groot SPC, Inze D, Engler G. 2005. The role of the cell cycle machinery in resumption of postembryonic development. Plant Physiology 137, 127-140.

Ogawa, M. et al. Gibberellin biosynthesis and response during Arabidopsis seed germination. Plant Cell 15, 1591-1604 (2003).Gilliland, L. U., Pawloski, L. C., Kandasamy, M. K. & Meagher, R. B. Arabidopsis actin gene ACT7 plays an essential role in germination and root growth. Plant Journal 33, 319-328 (2003).

de Castro, R. D., van Lammeren, A. A. M., Groot, S. P. C., Bino, R. J. & Hilhorst, H. W. M. Cell division and subsequent radicle protrusion in tomato seeds are inhibited by osmotic stress but DNA synthesis and formation of microtubular cytoskeleton are not. Plant Physiology 122, 327-335 (2000).

Waters, L.C. & Dure, L.S. Ribonucleic Acid Synthesis In Germinating Cotton Seeds. J. Mol. Biol. 19, 1-& (1966).

Boubriak I, Kargiolaki H, Lyne L, Osborne DJ. 1997. The requirement for DNA repair in desiccation tolerance of germinating embryos. Seed Science Research 7, 97-105.

Botha, F.C., Potgieter, G.P. & Botha, A.M. Respiratory Metabolism And Gene-Expression During Seed- Germination. Plant Growth Regulation 11, 211-224 (1992).

Eastmond, P. J. et al. Postgerminative growth and lipid catabolism in oilseeds lacking the glyoxylate cycle. Proceedings of the National Academy of Sciences of the United States of America 97, 5669-5674 (2000).

Debeaujon I, Koornneef M. 2000. Gibberellin requirement for Arabidopsis seed germination is determined both by testa characteristics and embryonic abscisic acid. Plant Physiology 122, 415-424.Nambara, E., Keith, K., McCourt, P. & Naito, S. A regulatory role for the ABI3 gene in the establishment of embryo maturation In Arabidopsis thaliana. Development 121, 629-636 (1995).

Li BL, Foley ME. 1995. Cloning and Characterization Of Differentially Expressed Genes In Imbibed Dormant and Afterripened Avena fatua Embryos. Plant Molecular Biology 29, 823-831.

Schopfer, P., Plachy, C. & Frahry, G. Release of reactive oxygen intermediates (superoxide radicals, hydrogen peroxide, and hydroxyl radicals) and peroxidase in germinating radish seeds controlled by light, gibberellin, and abscisic acid. Plant Physiology 125, 1591-1602 (2001).Shinomura, T., Hanzawa, H., Schafer, E. & Furuya, M. Mode of phytochrome B action in the photoregulation of seed germination in Arabidopsis thaliana. Plant Journal 13, 583-590 (1998).Oh E, Yamaguchi S, Kamiya Y, Bae G, Chung WI, Choi G. 2006. Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant Journal 47, 124-139.

Koornneef, M., Jorna, M.L., Brinkhorst-van der Swan, D.L.C. & Karssen, C.M. The Isolation Of Abscisic Acid (ABA) Deficient Mutants By Selection Of Induced Revertants In Non-Germinating Gibberellin Sensitive Lines Of Arabidopsis thaliana (L) Heynh. Theor. Appl. Genet. 61, 385-393 (1982).Parcy, F. et al. Regulation Of Gene Expression Programs During Arabidopsis Seed Development- Roles Of the Abi3 Locus and Of Endogenous Abscisic Acid. Plant Cell 6, 1567-1582 (1994).

Leung, J. et al. Arabidopsis ABA response gene ABI1- Features of a calcium modulated protein phosphatase. Science 264, 1448-1452 (1994).

Smolen, G. & Bender, J. Arabidopsis cytochrome p450 cyp83B1 mutations activate the tryptophan biosynthetic pathway. Genetics 160, 323-332 (2002).

Reinhardt, D. et al. Regulation of phyllotaxis by polar auxin transport. Nature 426, 255-260 (2003).

Petruzzelli, L., Coraggio, I. & Leubner-Metzger, G. Ethylene promotes ethylene biosynthesis during pea seed germination by positive feedback regulation of 1-aminocyclo- propane-1-carboxylic acid oxidase. Planta 211, 144-149 (2000).Ghassemian, M. et al. Regulation of abscisic acid signaling by the ethylene response pathway in arabidopsis. Plant Cell 12, 1117-1126 (2000).

Ogawa, M. et al. Gibberellin biosynthesis and response during Arabidopsis seed germination. Plant Cell 15, 1591-1604 (2003).Tyler, L. et al. DELLA proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiology 135, 1008-1019 (2004).

Bogatek, R., Come, D., Corbineau, F., Ranjan, R. and Lewak, S. (2002) Jasmonic acid affects dormancy and sugar catabolism in germinating apple embryos. Plant Physiology and Biochemistry 40, 167–173.

Finkelstein, R.R. Abscisic Acid-Insensitive Mutations Provide Evidence For Stage- Specific Signal Pathways Regulating Expression Of An Arabidopsis Late Embryogenesis-Abundant (Lea) Gene. Mol. Gen. Genet. 238, 401-408 (1993).

Finkelstein, R.R. Abscisic Acid-Insensitive Mutations Provide Evidence For Stage- Specific Signal Pathways Regulating Expression Of An Arabidopsis Late Embryogenesis-Abundant (Lea) Gene. Mol. Gen. Genet. 238, 401-408 (1993).Haslekas, C. et al. ABI3 mediates expression of the peroxiredoxin antioxidant AtPER1 gene and induction by oxidative stress. Plant Mol. Biol. 53, 313-326 (2003).

Wehmeyer, N. & Vierling, E. The expression of small heat shock proteins in seeds responds to discrete developmental signals and suggests a general protective role in desiccation tolerance. Plant Physiology 122, 1099-1108 (2000).

Nonogaki, H. & Morohashi, Y. An endo-beta-mannanase develops exclusively in the micropylar endosperm of tomato seeds prior to radicle emergence. Plant Physiology 110, 555-559 (1996).

Leubner-Metzger, G., Petruzzelli, L., Waldvogel, R., Vogeli-Lange, R. & Meins, F. Ethylene-responsive element binding protein (EREBP) expression and the transcriptional regulation of class I beta-1,3- glucanase during tobacco seed germination. Plant Molecular Biology 38, 785-795 (1998).

Mo, B. X. & Bewley, J. D. beta-Mannosidase (EC 3.2.1.25) activity during and following germination of tomato (Lycopersicon esculentum Mill.) seeds. Purification, cloning and characterization. Planta 215, 141-152 (2002).

Masubelele NH, Dewitte W, Menges M, Maughan S, Collins C, Huntley R, Nieuwland J, Scofield S, Murray JAH. 2005. D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. Proceedings Of The National Academy Of Sciences Of The United States Of America 102, 15694-15699.

Gallardo, K. et al. Proteomics of Arabidopsis seed germination. A comparative study of wild-type and gibberellin-deficient seeds. Plant Physiology 129, 823-837 (2002).

Dure, L. & Waters, L. Long-Lived Messenger RNA - Evidence From Cotton Seed Germination. Science 147, 410-& (1965).

Zlatanova JS, Ivanov PV, Stoilov LM, Chimshirova KV, Stanchev BS. 1987. Dna-Repair Precedes Replicative Synthesis During Early Germination In Maize. Plant Molecular Biology 10, 139-144.Salon, C., Raymond, P. & Pradet, A. Quantification Of Carbon Fluxes Through The Tricarboxylic-Acid Cycle In Early Germinating Lettuce Embryos. J. Biol. Chem. 263, 12278-12287 (1988).

Hooks, M. A., Kellas, F. & Graham, I. A. Long-chain acyl-CoA oxidases of Arabidopsis. Plant Journal 20, 1-13 (1999).

Debeaujon I, Léon-Kloosterziel KM, Koornneef M. 2000. Influence of the testa on seed dormancy, germination, and longevity in Arabidopsis. Plant Physiology 122, 403-413.

Haslekas C, Stacy RAP, Nygaard V, Culianez-Macia FA, Aalen RB. 1998. The expression of a peroxiredoxin antioxidant gene, AtPer1, in Arabidopsis thaliana is seed-specific and related to dormancy. Plant Molecular Biology 36, 833-845.

Hennig, L., Stoddart, W. M., Dieterle, M., Whitelam, G. C. & Schafer, E. Phytochrome E controls light-induced germination of Arabidopsis. Plant Physiology 128, 194-200 (2002).

Kushiro, T. et al. The Arabidopsis cytochrome P450CYP707A encodes ABA 8 '- hydroxylases: key enzymes in ABA catabolism. EMBO J. 23, 1647-1656 (2004).

Rodriguez PL, Benning G, Grill E. 1998. ABI2, a second protein phosphatase 2C involved in abscisic acid signal transduction in Arabidopsis. Febs Letters 421, 185-190.

Muday, G.K. & DeLong, A. Polar auxin transport: controlling where and how much. Trends In Plant Science 6, 535-542 (2001).

Preston, C.A., Betts, H. and Baldwin, I.T. (2002) Methyl jasmonate as an allelopathic agent: Sagebush inhibits germination of a neighboring tobacco, Nicotiana attenuata. Journal of Chemical Ecology 28, 2343–2369.

Schaller A. 2004. A cut above the rest: the regulatory function of plant proteases. Planta 220, 183-197.

Petruzzelli, L., Kunz, C., Waldvogel, R., Meins, F. & Leubner-Metzger, G. Distinct ethylene- and tissue-specific regulation of beta-1,3- glucanases and chitinases during pea seed germination. Planta 209, 195-201 (1999).

Bhaskar B, Ramachandra G, Virupaksha TK. 1990. Alpha-Galactosidase Of Germinating-Seeds Of Cassia-Sericea Sw. Journal Of Food Biochemistry 14, 45-59.

Gilliland LU, Pawloski LC, Kandasamy MK, Meagher RB. 2003. Arabidopsis actin gene ACT7 plays an essential role in germination and root growth. Plant Journal 33, 319-328.

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Germain, V. et al. Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings. Plant Journal 28, 1-12 (2001).

Cadman CSC, Toorop PE, Hilhorst HWM, Finch-Savage WE. 2006. Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism. Plant Journal 46, 805-822.

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Rajjou, L. et al. The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination. Plant Physiology 134, 1598-1613 (2004).

Adkins SW, Simpson GM, Naylor JM. 1984. The Physiological-Basis Of Seed Dormancy In Avena fatua.6. Respiration and the Stimulation Of Germination By Ethanol. Physiologia Plantarum 62, 148-152.

Footitt, S. et al. Control of germination and lipid mobilization by COMATOSE, the Arabidopsis homologue of human ALDP. Embo Journal 21, 2912-2922 (2002).

Leonhardt, N. et al. Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. Plant Cell 16, 596-615 (2004).

Beltranpena, E., Ortizlopez, A. & Dejimenez, E.S. Synthesis Of Ribosomal-Proteins From Stored Messenger-Rnas Early In Seed-Germination. Plant Mol. Biol. 28, 327-336 (1995).

Rylott, E. L. et al. Arabidopsis mutants in short- and medium-chain acyl-CoA oxidase activities accumulate acyl-CoAs and reveal that fatty acid beta-oxidation is essential for embryo development. Journal Of Biological Chemistry 278, 21370-21377 (2003).

Leung, J. et al. Arabidopsis ABA response gene ABI1- Features of a calcium modulated protein phosphatase. Science 264, 1448-1452 (1994).

Dommes, J. & Vandewalle, C. Polysome Formation And Incorporation Of New Ribosomes Into Polysomes During Germination Of The Embryonic Axis Of Maize. Physiol. Plant. 79, 289-296 (1990).

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TagsDormancy related Germination related ABA

Search terms At3g26790 At4g38750 At4g26080At1g28300 At5g02760 At5g57050At1g48270 At3g61850 At2g13540At3g59220 At2g46590 At5g48870At4g03560 At4g36930 At5g52300At1g56600 At3g54810 At2g22430At2g47180 At1g09570 At5g40280At4g26740 At5g46800 At5g67030At4g25580 At5g57630 At1g52340At1g21970 *vacuolar ATP synthase* At1g16540*dormancy* germin At5g62790dehydrin* *phytochrome* At1g63970

At2g26930At1g63970At3g02780At5g16440At2g17190At5g47770At3g29420At2g34630At1g17050At1g78510At2g18620At2g18640At3g14510At3g14530At3g14450At4g36810At3g32040At3g29430At2g23800At3g20160At1g49530At4g38460At2g01110At5g17230At4g34640At4g34650At4g14210At3g04870At1g57770At1g06820At1g06570At2g22260At5g57030At3g10230At4g25700At5g52570At3g63520At3g14440

At1g01290At2g27150At1g16540At2g29090At5g45340At3g19270At5g20910At1g08780At1g55870At3g11410At3g24220At1g78390At1g72770At2g36270At2g40220At3g24650At2g26300At4g34460ABA**abscisic**DREB*

Auxin Brassinosteroid Cytokinin

At1g05180 At5g24160 At5g35750At3g23050 At5g24150 At1g27320At1g04250 At5g24140 At2g01830At5g60890 At4g37760 At1g68460At4g39950 At2g22830 At2g27760At2g22330 At1g58440 At3g63110At4g31500 At5g42600 At4g24650At1g73590 At5g48010 At1g67110At5g57090 At2g07050 At4g29740At1g70940 At1g50430 At1g75450At2g01420 At3g02580 AT2G19500At5g15100 At3g19820 AT5G56970At1g77110 At2g38050 AT5G21482At1g23080 At3g50660 AT1G74890At5g16530 At5g05690 AT1G59940At2g38120 At1g16540 AT1G10470At2g36910 At2g29090 AT5G62920At3g28860 At2g36800 AT1G19050At2g47000 At3g61460 AT3G57040At3g21640 *brassinosteroid* cytokinin**auxin*IAA*

Ethylene Gibberellin Jasmonic acid

At1g66340 At1g14920 At3g22400At3g23150 At2g01570 At1g17420At5g03280 At1g66350 At1g72520At3g20770 At3g03450 At1g55020At3g04580 At5g17490 At3g45140At5g03730 At4g24210 At1g72520At3g61510 At3g11540 At5g42650At1g62960 At2g32440 At3g25760At4g08040 At1g79460 At3g25780At5g51690 At5g25900 At2g42490At1g01480 At4g25420 At2g43670At5g28360 At5g51810 At4g14940At2g22810 At5g07200 At1g62810At5g65800 At1g60980 At1g13280At4g11280 At1g44090 At1g17990At4g26200 At1g15550 At1g09400At4g37770 At1g80340 At1g76690At3g49700 At4g21690 At2g06050At1g05010 At1g80330 At1g19640At1g62380 At1g78440 jasmon**ethylene* At1g30040

At1g34500At1g02400At1g47990At5g27320At3g05120At3g63010At5g23530At4g25420gibberell*

Protein degradation

AT4G28520 *protease inhibitor* *carboxypeptidase*AT4G27160 *trypsin inhibitor* *protease*AT5G44120 *proteasome inhibitor* *proteasome*AT1G03880 *proteinase*AT4G27150 *peptidase*AT4G27140 *amino acid permease*AT4G27170At5g07190At4g26740At3g51810At2g40170At5g55240At2g41260At3g22500At2g41070*seed storage**LATE EMBRYOGENESIS ABUNDANT*oleosin*Em-*napincruciferin

Seed storage proteins/Late Embryogenesis Abundant

Inhibition of protein degradation

Heat Shock Cell-wall modification Cell cycle related

At3g46230 At1g65680 At5g63370At2g41690 At1g20190 At5g22220At4g18880 At1g62980 At1g67580heat shock* At1g12560 At5g03415

At1g69530 At2g32710At1g26770 At5g63610At2g28950 At2g26430At2g39700 At5g14960At2g40610 At1g27630At2g18660 At1g66750At2g37640 At1g47230At2g03090 At5g48630At2g45110 At3g24810At2g20750 At5g02470At3g03220 At5g27620At3g55500 At3g12280At3g29030 At5g48820At3g45960 At1g54610At3g60570 At1g77390At3g15370 At1g53050At3g45970 At3g50070At4g30380 At5g03455At4g38400 At5g65420At4g17030 At5g67260At4g28250 At5g50860At4g01630 At1g47870At4g38210 At4g37630At5g39270 At4g28980At5g39300 At3g48750At5g39290 At5g64960At5g02260 At2g22490At5g39280 At1g70210At5g05290 At1g57700At5g39310 At1g18040At5g39260 At2g36010At5g56320 At1g47210At1g10550 At5g43080At1g32170 At1g14750At1g65310 At1g02970At1g11545 At4g03270At1g14720 At3g01330At2g14620 At2g17620At2g18800 At1g09600At2g01850 At4g37490At2g36870 At3g50630At2g06850 At4g35620At3g48580 At1g80370At3g25050 At1g20930At3g44990 At1g16330At3g23730 At1g44110

At4g03210 At4g34160At4g30280 At1g76540At4g25810 At2g26760At4g37800 At1g76310At4g18990 At2g38620At4g30270 At1g34460At4g25820 At1g20590At4g13090 At2g27970At4g13080 At1g18670At4g14130 At3g11520At4g30290 At1g15570At4g28850 At2g27960At5g65730 At2g23430At5g57530 At4g34090At5g13870 At5g11300At5g57540 At3g05050At5g48070 At5g25380At5g57560 At5g10440At5g57550 At5g48640At1g69940 At1g73690At1g56620 At5g10270At1g56100 At1g74330At1g53840 At1g03740At1g53830 At5g44290At1g44980 At3g25100At1g23200 cell cycle*At1g11370 CDCAt1g09370 MCMAt1g05310 histone*At1g02810 cyclinAt2g47280At2g47040At2g47030At2g45220At2g43050At2g36710At2g36700At2g26450At2g26440At2g21610At2g19150At3g62170At3g60730At3g59010At3g49220At3g47400At3g43270At3g29090At3g27980At3g24130At3g17060At3g14310At3g14300

At3g10720At3g10710At3g06830At3g05620At3g05610At4g33230At4g33220At4g15980At4g02330At4g02320At4g02300At4g00190At5g64640At5g61680At5g55590At5g53370At5g51500At5g51490At5g49180At5g47500At5g27870At5g26810At5g20860At5g19730At5g18990At5g09760At5g07430At5g07420At5g07410At5g04970*cellulase**glucosidase**pectate lyase*pectin*polygalacturonase*endotransglycosylase**(1-4)-beta-mannan**beta-galactosidase**1,3-glucanase**1,4-beta-glucanase**galactosidase**mannosidase*

Cytoskeleton DNA repair

At2g42100 ribosom* At5g57450At1g04820 translation* At5g64520At1g50010 translation initiation* At5g41360At2g42170 *tRNA synthetase* At5g41370At5g23860 tRNA-splicing* At3g15620At1g64740 mRNA-binding protein* At3g28030At1g13180 elongation factor 1* At5g41150At3g27000 elongation factor T* At3g54670At3g53750 elongation factor P* At2g27170At5g19780 At5g51330At5g56180 At3g26680At3g33520 At5g62410At5g12250 At2g36490At1g73910 At2g31970At1g20010 At1g79650At2g37620 At2g47590At3g46520 At1g12370At2g42090 At4g02070At3g18780 At4g17380At3g12110 At4g25540At5g59370 At5g54260At3g60830 At5g61460At5g19770 At1g77320At1g18450 At1g48050At4g14960 At1g16970At5g44340 At5g57300At5g09810 At3g05210At1g49240 At1g30480At2g29550 At3g04880At5g17520 At5g18070At1g52030 At3g01540At5g06390 At3g24320At3g11700 At4g37010At2g26590 At3g09840At2g35860 At3g14890At3g46550 At5g48600At1g13980 At3g47460At3g52370 At1g67500At3g51050 At2g45280At2g41740 At5g20850At2g19760 At5g66130At2g19770 At4g09140At4g29340 At3g48190At4g29350 At5g57160At3g57410 At3g05200At5g56600 At3g22880At2g29890 At4g21070At4g30160 At5g65900At5g57320 At5g57970At4g34490 At5g54910

Translation associated

At3g25500 At5g54090At3g05520 At5g51280At4g01710 At5g50340At1g71790 At5g47010At3g46010 At5g44740At2g22640 At5g44680At5g28646 At5g43210At1g52250 At5g38470At4g38950 At5g27680At5g20110 At5g26742At4g15930 At5g26680At1g23220 At5g22330At3g16120 At5g16630At4g27360 At5g15920At2g35630 At5g14610At3g55000 At5g11350At2g18390 At5g08620At1g80350 At5g08110At3g55005 At5g07660At1g01510 At5g05450At5g06680 At5g03340*microtubule* At5g01310tubulin* At4g36050actin At4g35740

At4g35520At4g33370At4g31900At4g31150At4g30870At4g25540At4g25290At4g25120At4g16630At4g14180At4g12740At4g09730At4g02460At3g58580At3g58570At3g58510At3g53230At3g50880At3g48900At3g48425At3g47830At3g32920At3g28030At3g24495At3g22330At3g22310At3g21530At3g20475At3g19210

At3g18630At3g18600At3g18524At3g15960At3g15950At3g13226At3g13170At3g12710At3g12040At3g10420At3g10140At3g10010At3g09620At3g09100At3g07930At3g06480At3g05740At3g05480At3g02540At3g02060At2g48030At2g47330At2g45700At2g33730At2g31450At2g30350At2g21650At2g19490At2g07750At2g03390At2g03270At2g02550At2g01440At1g80850At1g80420At1g79950At1g79890At1g79050At1g77470At1g75230At1g75090At1g71370At1g66730At1g65070At1g63990At1g63250At1g60930At1g50410At1g49980At1g49250At1g31530At1g31500At1g31360

At1g29630At1g27880At1g27410At1g21710At1g21690At1g20750At1g20720At1g19025At1g18090At1g16190At1g15970At1g14460At1g14460At1g13635At1g12370At1g10930At1g10520At1g08130At1g03190At1g02670At1g01880

Respiration Electron Transport

At1g22020 At1g03020 At1g09420At2g20800 At1g06830 At1g24280At2g30390 At1g16700 At1g63290At3g04150 At1g22840 At1g64190At3g04170 At1g79010 At1g71100At3g04180 At2g07687 At2g01290At3g04190 At2g30540 At3g01850At3g04200 At2g47380 At3g02360At3g05950 At2g47880 At3g27300At3g14130 At3g02000 At5g13110At3g14150 At3g06310 At5g13420At3g14420 At3g09840 At5g14260At3g52730 At3g13640 At5g35790At4g01380 At3g17240 At5g40760At4g02580 At3g21460 At5g41670At4g03280 At3g51790 At5g61410At4g04950 At3g60270At4g05020 At3g60280At4g10040 At3g62400At4g14630 At4g15660At4g18360 At4g32470At4g21490 At4g37200At4g25835 At5g03340At4g28220 At5g08530At4g32520 At5g13430At5g08740 At5g13440At5g17740 At5g14070At5g20080 At5g18800At5g26030 At5g25450At5g57480 At5g37510At5g58970 At5g43430

At1g16700At1g22840At1g79010At2g47380At3g09840At3g51790At3g54890At3g62400At4g10340At4g32470At5g03340At5g08530At5g43430

Pentose phosphate pathway

Krebs cycle Beta oxidation

At1g04920 At1g01090 At4g39850At1g06020 At1g21400 At3g05970At1g06030 At1g24180 At5g27600At1g06730 At1g32480 At4g05160At1g08110 At1g48030 At5g63380At1g12000 At1g53240 At4g16760At1g12240 At1g54340 At5g65110At1g12780 At1g65930 At1g06290At1g12900 At1g79750 At3g51840At1g13440 At2g05710 At4g29010At1g16300 At2g13560 At3g06860At1g20950 At2g17130 At2g33150At1g22170 At2g18450 At5g48880At1g22650 At2g19900 At1g04710At1g23190 At2g22780 At3g58740At1g32440 At2g34590 At3g58750At1g35580 At2g42790 At2g42790At1g43670 At2g44350 At5g43280At1g47840 At2g47510 At5g65940At1g50390 At3g06650 At5g03860At1g50460 At3g13930 At3g21720At1g53310 At3g15020 At1g49430At1g55120 At3g16950 At4g23850At1g59900 At3g17240 At2g04350At1g62660 At3g25860 At1g01710At1g63180 At3g27380At1g64440 At3g52200At1g66430 At3g55410At1g68750 At3g58740At1g69200 At3g58750At1g70730 At3g60100At1g70820 At4g00570At1g72000 At4g13430At1g73370 At4g26910At1g74030 At4g26970At1g76550 At4g35260At1g78050 At4g35830At1g79530 At5g03290At1g79550 At5g08300At2g19860 At5g09660At2g22480 At5g11670At2g29560 At5g14590At2g31390 At5g23250At2g36190 At5g25880At2g36460 At5g40650At2g36530 At5g43330At2g36580 At5g49460At2g42600 At5g50950At2g45290 At5g55070At3g03250 At5g56720

Glycolysis and gluconeogenesis

At3g04050 At5g58330At3g04120 At5g66760At3g05820At3g06500At3g07690At3g10370At3g12780At3g13784At3g13790At3g14940At3g19480At3g20040At3g21720At3g22960At3g25960At3g27570At3g43190At3g49160At3g50520At3g52930At3g52990At3g54090At3g54690At3g55440At3g55650At3g55810At3g59480At3g60750At4g02280At4g04040At4g09510At4g10260At4g10750At4g10960At4g15530At4g17260At4g24620At4g26270At4g26390At4g26520At4g26530At4g29130At4g29220At4g32840At4g34200At4g34240At4g34860At4g37840At4g37870At4g38970At5g03690At5g03860At5g04120

At5g08570At5g11920At5g17310At5g17530At5g20830At5g22510At5g22620At5g37180At5g40510At5g42740At5g47810At5g49190At5g50850At5g51820At5g51830At5g52920At5g55900At5g56350At5g56630At5g61580At5g63680At5g64620At5g65690At5g65750

Stress

At1g01390 At1g03130 *expressed protein*At1g01420 At1g14030 *hypothetical protein*At1g02050 At1g32060At1g02920 At1g42970At1g02930 At1g51420At1g02950 At1g56190At1g04150 At1g67090At1g19540 At2g01140At1g22610 At2g21170At1g24110 At2g21330At1g51570 At2g35840At1g66540 At3g04790At1g74720 At3g26650At1g75280 At3g50820At1g75290 At3g51820At1g75300 At3g52340At2g02930 At3g54050At2g21730 At3g54270At2g21890 At3g55330At2g23190 At3g55800At2g23220 At3g61470At2g23230 At4g02770At2g23910 At4g05180At2g37040 At4g10120At2g39980 At4g12800At2g47730 At4g14690At3g10340 At4g15560At3g28740 At4g21280At3g48990 At4g21300At3g49620 At4g27270At3g49630 At4g28660At3g50210 At4g32260At3g53140 At4g37230At3g53260 At5g02120At4g00040 At5g11110At4g01070 At5g11450At4g02520 At5g12860At4g05160 At5g20280At4g08790 At5g38410At4g15870 At5g38420At4g16330 At5g38430At4g17690 At5g54500At4g19010 At5g58800At4g20080 At5g64380At4g22880 At5g66570At4g24520 At2g40100At4g30470 At2g20260At4g33360 At3g08940At4g34850 At3g47470At4g35420 At3g54890

Photosynthesis/chloroplast related

Unannotated by TAIR 6

At4g36220 At4g10340At4g36380 At4g28750At4g36770 At5g01530At4g37330 At5g28450At4g37340 At1g19150At4g39230 At1g68590At4g39330 At5g17870At5g01210 AtCg00700At5g04230 AtCg01060At5g04330 AtCg00340At5g06850 AtCg00490At5g08640 photosynth*At5g12970 chloro*At5g13930 plastocyanin*At5g36220 thylakoid*At5g47000At5g48060At5g58490At5g64370At3g47450At5g47910At1g64060 AT1G20480AT1G20490AT1G20500AT1G20510AT1G25460AT1G49390AT1G51680AT1G53520At1g56650AT1G61720AT1G62940AT1G65060At1g66390AT1G78550AT2G18560AT2G18570AT2G22930AT2G29710AT2G29730AT2G29740AT2G29750AT2G38240AT2G44800AT3G19000AT3G19010AT3G21230AT3G21240AT3G29630AT3G51240AT3G55120At4g00730

At4g09820AT4G10490AT4G22870AT4G27250At4g38620AT5G05270AT5G07990AT5G24530At5g35550AT5G38120AT5G42800AT5G43935AT5G54010AT5G54060AT5G63380AT5G63580AT5G63590AT5G63595AT5G63600AT5G66220At5g24520At5g23260At2g37260AT2G30490AT5G04230AT3G10340AT3G53260AT2G37040At4g13660At5g54160At4g25300At1g63650*phenylprop*phenylalanine ammonia**cinnamate*ferulate-5-hydroxylase*4-coumarate*O-methyltransferase family 2**caffeoyl-CoA**cinnamoyl-CoA reductase**cinnamyl-alcohol*chalcone synthase*chalcone isomerase**flavanone*flavonol**flavonoid**stress**dehydration**peroxiredoxin*desiccation**salt**osmotic**drought*

*abiotic**cold**wound**hypoxia**salinity*

TagsDormancy related

Gene NameSearch terms At3g26790 FUS3 (FUSCA 3); DNA bindinFUS3Last Updated: At1g28300 LEC2 (LEAFY COTYLEDON 2);LEC2

20-Sep-06 At1g48270 GCR1 (G-PROTEIN-COUPLED RGCR1At3g59220 PRN (PIRIN); calmodulin biPRN, PRN1At4g03560 ATTPC1 (TWO-PORE CHANNEL ATCCH1, ATTPC1At1g56600 transferase, transferring ATGOLS2At2g47180 transferase, transferring ATGOLS1At4g26740 ATS1 (ARABIDOPSIS THALIANATS1At4g25580 unknown protein; stress-responsive protein-related,At1g21970 LEC1 (LEAFY COTYLEDON 1); LEC1

DESCRIPTION FROM ATENSEMBL

Germination relatedGene Name

At4g38750 unknown protein; expressed proteinAt5g02760 catalytic/ protein phosphatase type 2C; protein phAt3g61850 DAG1 (DOF AFFECTING GERMINDAG1, BBFAAt2g46590 DAG2 (DOF AFFECTING GERMIDAG2At4g36930 SPT (SPATULA); DNA bindingSPTAt3g54810 transcription factor; zinc finger (GATA type) family At1g09570 PHYA (PHYTOCHROME A); G-prHY8, PHYAAt5g46800 BOU (A BOUT DE SOUFFLE); bBOUAt5g57630 CIPK21 (CBL-interacting prCIPK21


ABAGene Name

At4g26080 ABI1 (ABA INSENSITIVE 1); ABI1At5g57050 ABI2 (ABA INSENSITIVE 2);ABI2At2g13540 ABH1 (ABA HYPERSENSITIVE ABH1, CBP80At5g48870 SAD1 (SUPERSENSITIVE TO ASAD1At5g52300 RD29B (RESPONSIVE TO DESSLTI65, RD29BAt2g22430 ATHB6; transcription fact ATHB6, ATHB-6At5g40280 ERA1 (ENHANCED RESPONSE TERA1, FTB, WIGGUMAt5g67030 ABA1 (ABA DEFICIENT 1); zeABA1At1g52340 ABA2 (ABA DEFICIENT 2); oABA2At1g16540 ABA3/LOS5/SIR3; Mo-molybdoABA3At5g62790 DXR (1-DEOXY-D-XYLULOSE 5DXR, PDE129At1g63970 ISPF; 2-C-methyl-D-erythr ISPFAt2g26930 ATCDPMEK; ATP binding / kATCDPMEK, ISPEAt1g63970 ISPF; 2-C-methyl-D-erythr ISPFAt3g02780 IPP2 (ISOPENTENYL PYROPIPIAT1, IPP2At5g16440 IPP1; isopentenyl-diphosp IPP1, IPI1At2g17190 unknown protein; ubiquitin family protein, containAt5g47770 FPS1 (FARNESYL DIPHOSPHAFPS1At3g29420 unknown protein; geranylgeranyl pyrophosphate synthAt2g34630 dimethylallyltranstransferase; similar to geranyl diAt1g17050 dimethylallyltranstransferase; geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative, similar to GI:11322965; Except for first 55 amino acids, 52% identical to Prenyl transferase (Cyanophora paradoxa) (gi 99282). Location of est 120E9T7 (gb|T43950)At1g78510 dimethylallyltranstransferase; solanesyl diphosphate synthase (SPS), identical to solanesyl diphosphate synthase (Arabidopsis thaliana) GI:19911233; contains Pfam profile PF00348: Polyprenyl synthetaseAt2g18620 unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana) synonymous with farnesyltranstransferaseAt2g18640 GGPS4 (GERANYLGERANYL PGGPS4At3g14510 unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:9294375; similar to geranylgeranyl pyrophosphate synthetase GB:P34802 (Arabidopsis thaliana)At3g14530 farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to SP|P34802 Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) (Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); FarnesyltranstransferasAt3g14450 CID9; RNA binding / protein binding; RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.At4g36810 GGPS1 (GERANYLGERANYL PYGGPS1At3g32040 unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, identical to gi:413730; similar to GB:P34802 from (Arabidopsis thaliana) (Plant Physiol. 104 (4), 1469-1470 (1994))At3g29430 unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730; similar to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana)At2g23800 GGPS2 (GERANYLGERANYL PGGPS2At3g20160 farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:2578821; similar to geranyl geranyl pyrophosphate synthase GB:BAA23157 (Arabidopsis thaliana)At1g49530 GGPS6 (GERANYLGERANYL PGGPS6At4g38460 unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, 65% similar to geranylgeranyl pyrophosphate synthase (GI:413730);At2g01110 APG2 (ALBINO AND PALE GREAPG2, TATCAt5g17230 PSY (PHYTOENE SYNTHASE)PSY, PSY1At4g34640 SQS1 (SQUALENE SYNTHASE 1)ERG9, SQS1At4g34650 SQS2 (SQUALENE SYNTHASE 2SQS2At4g14210 PDS3 (PHYTOENE DESATURASEPDS3, DL3145CAt3g04870 ZDS (ZETA-CAROTENE DESATUPDE181, ZDS, ZDS1At1g57770 FAD binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen; amine oxidase family, contains similarity to carotenoid isomerase (Lycopersicon esculentum) GI:19550437, phytoene dehydrogenase (PDH1) GI:433144 from (Cercospora nicotianae); contains Pfam profile PF01593 amine oxidase, flavin-containingAt1g06820 CRTISO; carotenoid isomerCRTISOAt1g06570 PDS1 (PHYTOENE DESATURATIHPD, PDS1At2g22260 oxidoreductase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyAt5g57030 LUT2 (LUTEIN DEFICIENT 2);EPSILON-CYCLASE, LUT2At3g10230 LYC (LYCOPENE CYCLASE); lBETA-CYCLASE, LCY1, LYCAt4g25700 BETA-OHASE 1 (BETA-HYDROBETA-OHASEAt5g52570 BETA-OHASE 2 (BETA-CAROTBETA-OHASEAt3g63520 CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1); 9-cis-epoxycarotenoid dioxygenase / neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage dioxygenase 1 (CCD1), identical to putative 9-cis-epoxy-carotenoid dioxygenase (GI:3096910); contains Pfam profile PF03055: Retinal pigment epithelial membrane proteinAt3g14440 NCED3 (NINE-CIS-EPOXYCARONCED3


At1g01290 CNX3 (COFACTOR OF NITRATCNX3At2g27150 AAO3 (ALDEHYDE OXIDASE 3)AAO3, AO-3, AO3At1g16540 ABA3/LOS5/SIR3; Mo-molybdoABA3At2g29090 CYP707A2; heme binding /CYP707A2At5g45340 CYP707A3; heme binding /CYP707A3At3g19270 CYP707A4; heme binding /CYP707A4At5g20910 protein binding / ubiquitin-protein ligase/ zinc ion binding; zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)At1g08780 unknown protein; prefoldin, putative, similar to Swiss-Prot:Q9NQP4 prefoldin subunit 4 (Protein C-1) (Homo sapiens)At1g55870 ribonuclease/ transcriptional repressor; CAF1 family ribonuclease, contains Pfam domain, PF04857: CAF1 family ribonucleaseAt3g11410 protein phosphatase type 2C; protein phosphatase 2C, putative / PP2C, putative, identical to protein phosphatase 2C (PP2C) GB:P49598 (Arabidopsis thaliana); contains Pfam profile PF00481: Protein phosphatase 2C; identical to cDNA protein phosphatase 2C GI:633027At3g24220 nced6; Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid.At1g78390 nced9; Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid.At1g72770 HAB1; catalytic/ protein HAB1At2g36270 ABI5 (ABA INSENSITIVE 5); ABI5At2g40220 ABI4 (ABA INSENSITIVE 4);ABI4, GIN6, SUN6At3g24650 ABI3 (ABA INSENSITIVE 3); ABI3At2g26300 GPA1 (G PROTEIN ALPHA SUBGPA1At4g34460 AGB1 (GTP BINDING PROTEIN AGB1, GB1

AuxinGene Name

At1g05180 AXR1 (AUXIN RESISTANT 1); AXR1At3g23050 IAA7 (AUXIN RESISTANT 2); IAA7, AXR2At1g04250 AXR3 (AUXIN RESISTANT 3);AXR3, IAA17At5g60890 ATR1 (ALTERED TRYPTOPHAN RATR1At4g39950 CYP79B2; heme binding / iCYP79B2At2g22330 CYP79B3; heme binding / iCYP79B3At4g31500 CYP83B1 (CYTOCHROME P450ATR4, CYP83B1At1g73590 PIN1 (PIN-FORMED 1); transPIN1At5g57090 EIR1 (ETHYLENE INSENSITIVEAGR, AGR1, EIR1, PIN2, At1g70940 PIN3 (PIN-FORMED 3); auxinPIN3At2g01420 PIN4 (PIN-FORMED 4); auxinPIN4At5g15100 auxin:hydrogen symporter/ PIN5At1g77110 PIN6 (PIN-FORMED 6); auxiPIN6At1g23080 PIN7 (PIN-FORMED 7); auxinPIN7, AEH1At5g16530 auxin:hydrogen symporter/ AEH2, PIN8At2g38120 AUX1 (AUXIN RESISTANT 1);AUX1, MAP1, WAV5At2g36910 ATPGP1 (ARABIDOPSIS THALIATPGP1At3g28860 ATMDR1/ATMDR11/PGP19; ATPase, coupled to transmembAt2g47000 ATPase, coupled to transmembrane movement of substAt3g21640 TWD1 (TWISTED DWARF 1); FTWD1, FKBP-LIKE

dimethylallyltranstransferase; geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative, similar to GI:11322965; Except for first 55 amino acids, 52% identical to Prenyl transferase (Cyanophora paradoxa) (gi 99282). Location of est 120E9T7 (gb|T43950)dimethylallyltranstransferase; solanesyl diphosphate synthase (SPS), identical to solanesyl diphosphate synthase (Arabidopsis thaliana) GI:19911233; contains Pfam profile PF00348: Polyprenyl synthetaseunknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana) synonymous with farnesyltranstransferase

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:9294375; similar to geranylgeranyl pyrophosphate synthetase GB:P34802 (Arabidopsis thaliana)farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to SP|P34802 Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) (Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); FarnesyltranstransferasCID9; RNA binding / protein binding; RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, identical to gi:413730; similar to GB:P34802 from (Arabidopsis thaliana) (Plant Physiol. 104 (4), 1469-1470 (1994))unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730; similar to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana)

farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:2578821; similar to geranyl geranyl pyrophosphate synthase GB:BAA23157 (Arabidopsis thaliana)

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, 65% similar to geranylgeranyl pyrophosphate synthase (GI:413730);

FAD binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen; amine oxidase family, contains similarity to carotenoid isomerase (Lycopersicon esculentum) GI:19550437, phytoene dehydrogenase (PDH1) GI:433144 from (Cercospora nicotianae); contains Pfam profile PF01593 amine oxidase, flavin-containing

oxidoreductase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family

BETA-CYCLASE, LCY1, LYC

CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1); 9-cis-epoxycarotenoid dioxygenase / neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage dioxygenase 1 (CCD1), identical to putative 9-cis-epoxy-carotenoid dioxygenase (GI:3096910); contains Pfam profile PF03055: Retinal pigment epithelial membrane protein


protein binding / ubiquitin-protein ligase/ zinc ion binding; zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)unknown protein; prefoldin, putative, similar to Swiss-Prot:Q9NQP4 prefoldin subunit 4 (Protein C-1) (Homo sapiens)ribonuclease/ transcriptional repressor; CAF1 family ribonuclease, contains Pfam domain, PF04857: CAF1 family ribonucleaseprotein phosphatase type 2C; protein phosphatase 2C, putative / PP2C, putative, identical to protein phosphatase 2C (PP2C) GB:P49598 (Arabidopsis thaliana); contains Pfam profile PF00481: Protein phosphatase 2C; identical to cDNA protein phosphatase 2C GI:633027nced6; Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid.nced9; Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid.

BrassinosteroidGene Name

At5g24160 oxidoreductase; squalene monooxygenase 1,2 / squaAt5g24150 SQP1; squalene monooxy SQP1At5g24140 SQP2; oxidoreductase; EncSQP2At4g37760 oxidoreductase; squalene monooxygenase, putative /At2g22830 oxidoreductase; squalene monooxygenase, putative /At1g58440 XF1; oxidoreductase; XF1 XF1At5g42600 catalytic/ lyase; pentacyclic triterpene synthase, pAt5g48010 catalytic; Encodes an oxidosqualene cyclase involved At2g07050 CAS1 (CYCLOARTENOL SYNTHACAS1At1g50430 DWF5 (DWARF 5); sterol deDWF5, ST7RAt3g02580 STE1 (STEROL 1); C-5 sterDWF7, STE1At3g19820 DWF1 (DIMINUTO 1); catalytCBB1, DIM1, DWF1, P445/At2g38050 DET2 (DE-ETIOLATED 2); SiDET2, DWF6At3g50660 DWF4 (DWARF 4); encodes a CLM, DWF4At5g05690 CPD (CABBAGE 3); heme binCBB3, CPD, CYP90A1, DWAt1g16540 ABA3/LOS5/SIR3; Mo-molybdoABA3At2g29090 CYP707A2; heme binding /CYP707A2At2g36800 DOGT1 (DON-GLUCOSYLTRANSDOGT1At3g61460 BRH1 (BRASSINOSTEROID-RESBRH1

dimethylallyltranstransferase; geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative, similar to GI:11322965; Except for first 55 amino acids, 52% identical to Prenyl transferase (Cyanophora paradoxa) (gi 99282). Location of est 120E9T7 (gb|T43950)dimethylallyltranstransferase; solanesyl diphosphate synthase (SPS), identical to solanesyl diphosphate synthase (Arabidopsis thaliana) GI:19911233; contains Pfam profile PF00348: Polyprenyl synthetaseunknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana) synonymous with farnesyltranstransferase

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:9294375; similar to geranylgeranyl pyrophosphate synthetase GB:P34802 (Arabidopsis thaliana)farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to SP|P34802 Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) (Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); FarnesyltranstransferasCID9; RNA binding / protein binding; RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.



unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, 65% similar to geranylgeranyl pyrophosphate synthase (GI:413730);


oxidoreductase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family



protein binding / ubiquitin-protein ligase/ zinc ion binding; zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)

protein phosphatase type 2C; protein phosphatase 2C, putative / PP2C, putative, identical to protein phosphatase 2C (PP2C) GB:P49598 (Arabidopsis thaliana); contains Pfam profile PF00481: Protein phosphatase 2C; identical to cDNA protein phosphatase 2C GI:633027

CytokininGene Name

At5g35750 AHK2 (ARABIDOPSIS HISTIDAHK2At1g27320 AHK3 (ARABIDOPSIS HISTIDINAHK3At2g01830 WOL (CYTOKININ RESPONSE 1AHK4At1g68460 ATIPT1; adenylate dimethyATIPT1At2g27760 ATIPT2 (TRNA ISOPENTENYLATIPT2At3g63110 ATIPT3; ATP binding / tRNAATIPT3At4g24650 ATIPT4; AB061402 ArabidopATIPT4At1g67110 CYP735A2; heme binding /CYP709A2At4g29740 CKX4 (CYTOKININ OXIDASE CKX4At1g75450 CKX6 (CYTOKININ OXIDASE CKX6At2g19500 CKX2 (CYTOKININ OXIDASE CKX2At5g56970 CKX3 (CYTOKININ OXIDASE CKX3At5g21482 xidoreductase; cytokinin CKX5At1g74890 ARR15 (RESPONSE REGULATORARR15At1g59940 ARR3 (RESPONSE REGULATOR ARR3At1g10470 ARR4 (RESPONSE REGULATORARR4At5g62920 ARR6 (RESPONSE REGULATOR ARR6At1g19050 ARR7 (RESPONSE REGULATORARR7At3g57040 ARR9 (RESPONSE REACTOR 4)ARR9

dimethylallyltranstransferase; geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative, similar to GI:11322965; Except for first 55 amino acids, 52% identical to Prenyl transferase (Cyanophora paradoxa) (gi 99282). Location of est 120E9T7 (gb|T43950)

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana) synonymous with farnesyltranstransferase

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:9294375; similar to geranylgeranyl pyrophosphate synthetase GB:P34802 (Arabidopsis thaliana)farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to SP|P34802 Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) (Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferas






protein phosphatase type 2C; protein phosphatase 2C, putative / PP2C, putative, identical to protein phosphatase 2C (PP2C) GB:P49598 (Arabidopsis thaliana); contains Pfam profile PF00481: Protein phosphatase 2C; identical to cDNA protein phosphatase 2C GI:633027

EthyleneGene Name

At1g66340 ETR1 (ETHYLENE RESPONSE 1ETR1At3g23150 ETR2 (ETHYLENE RESPONSE 2ETR2At5g03280 EIN2 (ETHYLENE INSENSITIVEIN2, EIN2-NRAMPAt3g20770 EIN3 (ETHYLENE-INSENSITIVEIN3At3g04580 EIN4 (ETHYLENE INSENSITIEIN4At5g03730 CTR1 (CONSTITUTIVE TRIPLECTR1, SIS1At3g61510 ACS1 (ACC SYNTHASE 1); 1-ACS1At1g62960 ACS10 (ACC SYNTHASE 10); ACS10At4g08040 ACS11; 1-aminocyclopropanACS11At5g51690 ACS12; 1-aminocyclopropanACS12At1g01480 ACS2; a member of the 1-aACS2At5g28360 ACS3 (1-AMINOCYCLOPROPANACS3At2g22810 ACS4 (1-AMINOCYCLOPROPANACS4At5g65800 ACS5 (ACC SYNTHASE 5); 1-ACS5At4g11280 ACS6 (1-AMINOCYCLOPROPANACS6At4g26200 ACS7; 1-aminocyclopropaneACS7At4g37770 ACS8; Encodes an auxin i ACS8At3g49700 ETO3 (ETHYLENE OVERPRODUCACS9At1g05010 EFE; Encodes 1-aminocyclATEAT1At1g62380 ACO2 (ACC OXIDASE 2); EncACO2

dimethylallyltranstransferase; geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative, similar to GI:11322965; Except for first 55 amino acids, 52% identical to Prenyl transferase (Cyanophora paradoxa) (gi 99282). Location of est 120E9T7 (gb|T43950)

unknown protein; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from (Arabidopsis thaliana) synonymous with farnesyltranstransferase

farnesyltranstransferase; geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative, similar to SP|P34802 Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) (Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferas




GibberellinGene Name

At1g14920 GAI (GA INSENSITIVE); tranGAIAt2g01570 RGA1 (REPRESSOR OF GA1-3 1RGA1At1g66350 RGL1 (RGA-LIKE 1); transcrRGL1At3g03450 RGL2 (RGA-LIKE 2); transcrRGL2At5g17490 RGL3; transcription facto RGL3At4g24210 SLY1 (SLEEPY1); Encodes fSLY1At3g11540 SPY (SPINDLY); Encodes a NSPY, SPINDLYAt2g32440 KAO2 (ENT-KAURENOIC ACIDCYP88A4, KAO2At1g79460 GA2 (GA REQUIRING 2); entGA2At5g25900 GA3 (GA REQUIRING 3); oxyCYP701A3, GA3At4g25420 GA5 (GA REQUIRING 5); gibbGA5At5g51810 GA20OX2; gibberellin 20-oxidase; Encodes gibberellin At5g07200 YAP169; gibberellin 20-oxiYAP169At1g60980 gibberellin 20-oxidase; gibberellin 20-oxidase, putaAt1g44090 iron ion binding / isopenicillin-N synthase; gibbereAt1g15550 GA4 (GA REQUIRING 4); gibGA4At1g80340 GA4H; gibberellin 3-beta- GA4HAt4g21690 iron ion binding / isopenicillin-N synthase; gibberAt1g80330 iron ion binding / isopenicillin-N synthase; gibbereAt1g78440 gibberellin 2-beta-dioxygeGA2OX1At1g30040 gibberellin 2-beta-dioxyg GA2OX2At1g34500 acyltransferase; membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related, similar to wax synthase (Simmondsia chinensis) GI:5020219; contains Pfam profile PF03062: MBOAT familyAt1g02400 gibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox2 (GI:4678368); similar to dioxygenase GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt1g47990 gibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox1 (GI:4678366); similar to dioxygenase GB:CAA70330 GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt5g27320 catalytic; expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873At3g05120 catalytic; expressed protein, low similarity to PrMC3 (Pinus radiata) GI:5487873At3g63010 catalytic; expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873At5g23530 catalytic; expressed protein, contains similarity to PrMC3 (Pinus radiata) GI:5487873At4g25420 GA5 (GA REQUIRING 5); gibbGA5



Jasmonic acidGene Name

At3g22400 iron ion binding / lipoxygenase; lipoxygenase, putaAt1g17420 LOX3; iron ion binding / lipoxygenase; LipoxygenaseAt1g72520 iron ion binding / lipoxygenase; lipoxygenase, putAt1g55020 LOX1; lipoxygenase; lipo LOX1At3g45140 LOX2 (LIPOXYGENASE 2); ChLOX2At1g72520 iron ion binding / lipoxygenase; lipoxygenase, putAt5g42650 AOS (ALLENE OXIDE SYNTHASAOS, CYP74AAt3g25760 AOC1; encodes allene oxidAOC1At3g25780 AOC2 (ALLENE OXIDE CYCLASAOC2At2g42490 copper ion binding; copper amine oxidase, putativeAt2g43670 unknown protein; glycosyl hydrolase family protein At4g14940 ATAO1; copper ion bindingATAO1, DL3510WAt1g62810 copper ion binding; copper amine oxidase, putativeAt1g13280 AOC4; Encodes allene oxidAOC4At1g17990 12-oxophytodienoate reductase; 12-oxophytodienoatAt1g09400 12-oxophytodienoate reductase; 12-oxophytodienoate reductase, putative, similar to OPR1 (GI:3882355) and OPR2 (GI:3882356)At1g76690 OPR2; 12-oxophytodienoateOPR2At2g06050 OPR3; 12-oxophytodienoatOPDA-REDUCTASE, OPR3At1g19640 JMT (JASMONIC ACID CARBOJMT

acyltransferase; membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related, similar to wax synthase (Simmondsia chinensis) GI:5020219; contains Pfam profile PF03062: MBOAT familygibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox2 (GI:4678368); similar to dioxygenase GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domaingibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox1 (GI:4678366); similar to dioxygenase GB:CAA70330 GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domaincatalytic; expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873catalytic; expressed protein, low similarity to PrMC3 (Pinus radiata) GI:5487873catalytic; expressed protein, similar to PrMC3 (Pinus radiata) GI:5487873catalytic; expressed protein, contains similarity to PrMC3 (Pinus radiata) GI:5487873


Gene NameAt4g28520 CRU3 (CRUCIFERIN 3); nutrCRU3At4g27160 lipid binding / nutrient reservoir; 2S seed storage protein 3 / 2S albumin storage protein / NWMU2-2S alAt5g44120 CRA1 (CRUCIFERINA); nutriCRA1At1g03880 CRU2 (CRUCIFERIN 2); nutrCRU2, CRBAt4g27150 lipid binding / nutrient reservoir; 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2, identical to SP|P15458At4g27140 lipid binding / nutrient reservoir; 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1, identical to SP|P15457At4g27170 lipid binding / nutrient reservoir; 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4, identical to SP|P15460At5g07190 ATS3 (ARABIDOPSIS THALIAATS3At4g26740 ATS1 (ARABIDOPSIS THALIANATS1At3g51810 ATEM1; Encodes a ABA-induATEM1At2g40170 ATEM6 (ARABIDOPSIS EARLY ATEM6, EM6At5g55240 calcium ion binding; caleosin-related family protein / embryo-specific protein, putative, strong similarity to embryo-specific protein 1 (Arabidopsis thaliana) GI:3335169; contains PfamAt2g41260 M17; Late-embryogenesis-aM17At3g22500 ATECP31; mRNA for LEA prATECP31At2g41070 EEL (ENHANCED EM LEVEL);DPBF4, BZIP12, EEL

12-oxophytodienoate reductase; 12-oxophytodienoate reductase, putative, similar to OPR1 (GI:3882355) and OPR2 (GI:3882356)

acyltransferase; membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related, similar to wax synthase (Simmondsia chinensis) GI:5020219; contains Pfam profile PF03062: MBOAT familygibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox2 (GI:4678368); similar to dioxygenase GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domaingibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox1 (GI:4678366); similar to dioxygenase GB:CAA70330 GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

Seed storage proteins/Late Embryogenesis Abundant


Protein degradation Heat Shock

At3g46230lipid binding / nutrient reservoir; 2S seed storage protein 3 / 2S albumin storage protein / NWMU2-2S al At2g41690

At4g18880

lipid binding / nutrient reservoir; 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2, identical to SP|P15458lipid binding / nutrient reservoir; 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1, identical to SP|P15457lipid binding / nutrient reservoir; 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4, identical to SP|P15460

calcium ion binding; caleosin-related family protein / embryo-specific protein, putative, strong similarity to embryo-specific protein 1 (Arabidopsis thaliana) GI:3335169; contains Pfam

acyltransferase; membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related, similar to wax synthase (Simmondsia chinensis) GI:5020219; contains Pfam profile PF03062: MBOAT familygibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox2 (GI:4678368); similar to dioxygenase GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domaingibberellin 2-beta-dioxygenase; gibberellin 2-oxidase, putative / GA2-oxidase, putative, similar to GA2ox1 (GI:4678366); similar to dioxygenase GB:CAA70330 GI:1666096 from (Marah macrocarpus); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

Inhibition of protein degradation

Gene NameCell-wall modification

ATHSP17.4; member of the ATHSP At1g65680AT-HSFB3; DNA binding / trAT-HSFB3 At1g20190AT-HSFA4A; DNA binding / tAT-HSFA4A At1g62980

At1g12560lipid binding / nutrient reservoir; 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2, identical to SP|P15458 At1g69530lipid binding / nutrient reservoir; 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1, identical to SP|P15457 At1g26770lipid binding / nutrient reservoir; 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4, identical to SP|P15460 At2g28950

At2g39700At2g40610At2g18660At2g37640

calcium ion binding; caleosin-related family protein / embryo-specific protein, putative, strong similarity to embryo-specific protein 1 (Arabidopsis thaliana) GI:3335169; contains Pfam At2g03090At2g45110At2g20750At3g03220At3g55500At3g29030At3g45960At3g60570At3g15370At3g45970At4g30380At4g38400At4g17030At4g28250At4g01630At4g38210At5g39270At5g39300At5g39290At5g02260At5g39280At5g05290At5g39310At5g39260At5g56320At1g10550At1g32170At1g65310At1g11545At1g14720At2g14620At2g18800At2g01850At2g36870At2g06850At3g48580At3g25050At3g44990At3g23730


At4g03210At4g30280At4g25810At4g37800At4g18990At4g30270At4g25820At4g13090At4g13080At4g14130At4g30290At4g28850At5g65730At5g57530At5g13870At5g57540At5g48070At5g57560At5g57550At1g69940At1g56620At1g56100At1g53840At1g53830At1g44980At1g23200At1g11370At1g09370At1g05310At1g02810At2g47280At2g47040At2g47030At2g45220At2g43050At2g36710At2g36700At2g26450At2g26440At2g21610At2g19150At3g62170At3g60730At3g59010At3g49220At3g47400At3g43270At3g29090At3g27980At3g24130At3g17060At3g14310At3g14300

At3g10720At3g10710At3g06830At3g05620At3g05610At4g33230At4g33220At4g15980At4g02330At4g02320At4g02300At4g00190At5g64640At5g61680At5g55590At5g53370At5g51500At5g51490At5g49180At5g47500At5g27870At5g26810At5g20860At5g19730At5g18990At5g09760At5g07430At5g07420At5g07410At5g04970

Gene NameCell cycle related

ATEXPB2 (ARABIDOPSIS THAAT-EXPB2 At5g63370ATEXPA11 (ARABIDOPSIS THAT-EXP11, EXP11 At5g22220ATEXPA18 (ARABIDOPSIS THAT-EXP18, EXP18 At1g67580ATEXPA7 (ARABIDOPSIS THAAT-EXP7 At5g03415ATEXPA1 (ARABIDOPSIS THAAT-EXP1 At2g32710ATEXPA10 (ARABIDOPSIS THEXP10 At5g63610ATEXPA6 (ARABIDOPSIS THAAT-EXP6, EXP6 At2g26430ATEXPA4 (ARABIDOPSIS THAAT-EXP4, EXP4 At5g14960ATEXPA8 (ARABIDOPSIS THAAT-EXP8, EXP8 At1g27630unknown protein; expansinEXPR3 At1g66750ATEXPA3 (ARABIDOPSIS THAAT-EXP3, EXP3 At1g47230ATEXPA15 (ARABIDOPSIS THAT-EXP15, EXP15 At5g48630ATEXPB4 (ARABIDOPSIS THAAT-EXPB4, EXPB4 At3g24810ATEXPB1 (ARABIDOPSIS THAAT-EXPB1, EXPB1 At5g02470ATEXPA13 (ARABIDOPSIS THAT-EXP13, EXP13 At5g27620ATEXPA16 (ARABIDOPSIS THAT-EXP16, EXP16 At3g12280ATEXPA5 (ARABIDOPSIS THAAT-EXP5, EXP5 At5g48820ATEXLA3 (ARABIDOPSIS THAAT-EXPL3 At1g54610ATEXPB5 (ARABIDOPSIS THAAT-EXPB5, EXPB5 At1g77390ATEXPA12 (ARABIDOPSIS THAT-EXP12, EXP12 At1g53050ATEXLA1 (ARABIDOPSIS THAAT-EXPL1, EXPL1 At3g50070unknown protein; expansinEXPR2 At5g03455ATEXLA2 (ARABIDOPSIS THAAT-EXPL2, EXPL2 At5g65420ATEXLB1 (ARABIDOPSIS THAAT-EXPR At5g67260ATEXPB3 (ARABIDOPSIS THAAT-EXPB3, EXPB3 At5g50860ATEXPA17 (ARABIDOPSIS THAT-EXP17, EXP17 At1g47870ATEXPA20 (ARABIDOPSIS THAT-EXP20, EXP20 At4g37630ATEXPA22 (ARABIDOPSIS THAT-EXP22 At4g28980ATEXPA25 (ARABIDOPSIS THAT-EXP25, EXP25 At3g48750ATEXP26 (ARABIDOPSIS THAAT-EXP26, EXP26 At5g64960ATEXPA9 (ARABIDOPSIS THAAT-EXP9 At2g22490ATEXPA23 (ARABIDOPSIS THAT-EXP23, EXP23 At1g70210ATEXPA2 (ARABIDOPSIS THAAT-EXP2 At1g57700ATEXPA24 (ARABIDOPSIS THAT-EXP24 At1g18040ATEXPA21 (ARABIDOPSIS THAT-EXP21 At2g36010ATEXPA14 (ARABIDOPSIS THAT-EXP14, EXP14 At1g47210XTH33; hydrolase, acting on glycosyl bonds / hydrolaAt5g43080XTR4 (XYLOGLUCAN ENDOTRAXTR4, XTH30 At1g14750ATXTH17; hydrolase, actingXTH17, XTR1 At1g02970hydrolase, acting on glycosyl bonds / hydrolase, hy At4g03270XTR2 (XYLOGLUCAN ENDOTRAEXGT-A2, XTH28, XTR2 At3g01330hydrolase, acting on glycoXTH10, XTR14 At2g17620hydrolase, acting on glycoXTH21, XTR17 At1g09600EXGT-A3; hydrolase, actingEXGT-A3, XTH27 At4g37490hydrolase, acting on glycoXTH32 At3g50630EXGT-A1 (ENDO-XYLOGLUCANEXGT-A1, EXT, XTH4 At4g35620hydrolase, acting on glycoXTH11 At1g80370XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE At1g20930XTR8; hydrolase, acting o XTR8, ATXG, XTH31 At1g16330hydrolase, acting on glycoXTH16 At1g44110


XTH9 (XYLOGLUCAN ENDOTRANXTH9, EXGT-A6, XTR16 At4g34160ATXTH18; hydrolase, actingXTH18 At1g76540XTR6 (XYLOGLUCAN ENDOTRAXTR6, XTH23 At2g26760hydrolase, acting on glyc XTH7, XTR15 At1g76310hydrolase, acting on glycoXTH29, XTR13 At2g38620MERI5B; hydrolase, acting MERI5B, MERI-5, SEN4, X At1g34460XTR9 (XYLOGLUCAN ENDOTRAXTR9, XTH14 At1g20590hydrolase, acting on glycoXTH2 At2g27970hydrolase, acting on glycoXTH1 At1g18670XTR7 (XYLOGLUCAN ENDOTRAXTR7, DL3105C, XTH15 At3g11520ATXTH19; hydrolase, actingXTH19 At1g15570hydrolase, acting on glycoXTH26, XTR18 At2g27960hydrolase, acting on glyc XTH6, XTR10 At2g23430hydrolase, acting on glycoXTH12 At4g34090EXGT-A4 (ENDOXYLOGLUCAN EXGT-A4, XTH5, XTR12 At5g11300hydrolase, acting on glycoXTH13 At3g05050ATXTH20; hydrolase, actingXTH20 At5g25380TCH4 (TOUCH 4); hydrolaseTCH4, XTH22 At5g10440XTR3 (XYLOGLUCAN ENDOTRAXTH3, EXGT-A5, XTH25, XAt5g48640pectinesterase; pectinesterase family protein, cont At1g73690enzyme inhibitor/ pectinesterase; pectinesterase inhAt5g10270enzyme inhibitor/ pectinesterase; pectinesterase in At1g74330ATPME1; pectinesterase; ATPME1 At1g03740ATPME2; encodes a pectinATPME2, PME2 At5g44290pectinesterase; pectinesterase family protein, cont At3g25100enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, similar to pectin methylesterase GI:1279597 from (Nicotiana plumbaginifolia); contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:At1g09360.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor (InterPro:IPR0071pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseVGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase; Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitorenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseVGDH2; enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor ;similar to pollen-specific pectin esterase GI:1620652 frpectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, similar to pectinesterase (EC 3.1.1.11) from Vitis vinifera GI:15081598, Lycopersicon esculentum SP|Q43143 SP|P14280; contains Pfam profile PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, similar to pectinesterase precursor GB:Q43043 (Petunia integrifolia); contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 Pectinesterasepectinesterase; pectinesterase family protein, similar to pectinesterase GB:AAB57669 (Citrus sinensis); contains Pfam profile: PF01095 pectinesteraseATPME3; encodes a pectinATPME3pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase

enzyme inhibitor/ pectinesterase; pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains similarity to pectinesterase GB:AAB57671 (Citrus sinensis); contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitorenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesDL4030Cpectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family proteinenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, similar to pectinesterase (EC 3.1.1.11) from Salix gilgiana GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF0109pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesterase

Gene NameCytoskeleton

ATP binding / kinase/ protein kinase/ protein serine At2g42100E2F1; transcription factor E2F1 At1g04820ATP binding / kinase/ protein kinase/ protein serine At1g50010DPB; Encodes a homolog of DPB At2g42170KRP4 (KIP-RELATED PROTEIN ACK2, ICK7, KRP4 At5g23860HEN3 (HUA ENHANCER 3); ATP binding / kinase/ proteinAt1g64740RCY1; cyclin-dependent proRCY1 At1g13180DEL2/E2FD/E2L1; DNA binding / protein binding / transAt3g27000cyclin-dependent protein kinase; cyclin family prote At3g53750CDKD1;2; ATP binding / kinCAK4AT At5g19780CYCA3;4; cyclin-dependent protein kinase regulator;At5g56180cyclin-dependent protein kinase; cyclin family prote At3g33520ICK3; cyclin-dependent proICK3, KRP5 At5g12250DPA; transcription factor; DPA, DP2A At1g73910CYCH;1; cyclin-dependent CYCH;1, ATCYCH1 At1g20010RBR1 (RETINOBLASTOMA-RELATRBL1, RBR1 At2g37620ICK6; Putative cyclin depeICK6, KRP3 At3g46520ATP binding / kinase/ protein kinase/ protein serine At2g42090CYCA1;2; cyclin-dependent CYCA1;2 At3g18780ATP binding / kinase/ protein kinase/ protein serine At3g12110CYCD3;3; cyclin-dependentCYCD3;3 At5g59370CDC25; Encodes a homolog of yeast cell cycle regulaAt3g60830CYCD4;1; cyclin-dependentCYCD4;1 At5g19770CYCD3;2; cyclin-dependent protein kinase; cyclin fa At1g18450ATP binding / protein kinase/ protein serine/threoni At4g14960E2FC; transcription factor E2FC At5g44340CYCD5;1; cyclin-dependentCYCD5;1 At5g09810CAK1AT (CDK-ACTIVATING KINCAK1AT At1g49240CDC2A (CELL DIVISION CONTCDC2A At2g29550CDKC;2; ATP binding / kinase/ protein kinase/ prote At5g17520CYCD2;1; cyclin-dependent CYCD2;1 At1g52030CYCD1;1; cyclin-dependentCYCD1;1 At5g06390ATP binding / kinase/ protein kinase/ protein serine At3g11700CDKD1;3; ATP binding / kinCAK2AT At2g26590E2F3 (E2F TRANSCRIPTION FE2F3 At2g35860CYCA3;2; cyclin-dependent protein kinase; cyclin famAt3g46550CYCA3;1; cyclin-dependent protein kinase regulator;At1g13980SDS (SOLO DANCERS); cyclSDS At3g52370WEE1; ATP binding / kinaseWEE1, WEE1AT At3g51050CYCD6;1; cyclin-dependent protein kinase; cyclin fa At2g41740DEL3; transcription factor DEL3 At2g19760CYCB2;1; cyclin-dependent protein kinase regulator; At2g19770ATP binding / kinase/ protein kinase/ protein serine At4g29340CYC1 (CYCLIN 1); cyclin-deCYC1 At4g29350ICK2; Gene was isolated frICK2 At3g57410CYCB2;2; cyclin-dependent protein kinase regulator; At5g56600CYCA2;4; cyclin-dependent protein kinase regulator;At2g29890CDKB2;2 (CYCLIN-DEPENDENTCDKB2;2 At4g30160CYCB3;1; cyclin-dependentCYCB3;1 At5g57320CYCA1;1; cyclin-dependent protein kinase regulator; At4g34490


CYCD3;1; cyclin-dependent CYCD3;1 At3g25500CDKB2;1; kinase; Encodes aCDKB2;1, ARATH At3g05520CYCB1;4 (CYCLIN 3); cyclin-dependent protein kinaseAt4g01710CYCB2;4; cyclin-dependent CYCB2;4 At1g71790CDKB1;2; kinase; Encodes CDKB1;2 At3g46010cyclin-dependent protein kinase regulator; cyclin, puAt2g22640cyclin-dependent protein kinase regulator; cyclin, p At5g28646CKS2; cyclin-dependent protein kinase; cyclin-depenAt1g52250IBS1; ATP binding / kinase/ protein kinase/ protein At4g38950CYCB1;3 (CYCLIN B1;3); cyCYCB1;3 At5g20110CYCA2;3; cyclin-dependent protein kinase regulator;At4g15930CKS1; cyclin-dependent proCKS1 At1g23220ICK1 (KIP-RELATED PROTEIN ICK1 At3g16120unknown protein; expressed protein At4g27360CYC3B (MITOTIC-LIKE CYCLINCYCLIN3B At2g35630ATP binding / kinase/ protein kinase/ protein serine At3g55000CYCA2;1; cyclin-dependent CYCA2;1 At2g18390CYCD4;2; cyclin-dependentCYCD4;2 At1g80350cyclin-dependent protein kinase; cyclin family prote At3g55005CDKD1;1; ATP binding / kinCAK3AT At1g01510CDKC;1; ATP binding / kinase/ protein kinase/ prote At5g06680ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase; similar to protein kinase family protein [Arabidopsis thaliana] (TAIRATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase; protein kinase family protein, contains protein kinase domainATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase; protein kinase family protein, contains Pfam domain, PF00069CDC45 (CELL DIVISION CYCLCDC45

enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, similar to pectin methylesterase GI:1279597 from (Nicotiana plumbaginifolia); contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:At1g09360.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor (InterPro:IPR0071pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseVGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase; Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitorenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseVGDH2; enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor ;similar to pollen-specific pectin esterase GI:1620652 frpectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, similar to pectinesterase (EC 3.1.1.11) from Vitis vinifera GI:15081598, Lycopersicon esculentum SP|Q43143 SP|P14280; contains Pfam profile PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, similar to pectinesterase precursor GB:Q43043 (Petunia integrifolia); contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 Pectinesterasepectinesterase; pectinesterase family protein, similar to pectinesterase GB:AAB57669 (Citrus sinensis); contains Pfam profile: PF01095 pectinesterase

pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase

enzyme inhibitor/ pectinesterase; pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains similarity to pectinesterase GB:AAB57671 (Citrus sinensis); contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitorenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase

pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase

enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, similar to pectinesterase (EC 3.1.1.11) from Salix gilgiana GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF0109pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase family protein, contains Pfam profile: PF01095 pectinesterasepectinesterase; pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesterase

Gene Namemotor/ protein binding / s ACT5TUA4; Encodes an alpha tubTUA4TUA2; Encodes alpha-2,4 tTUA2motor/ protein binding / structural constituent of cytoskeleton; actin, putativTUB8; beta-tubulin, preferTUB8, TUBB8TUA1 (ALPHA-1 TUBULIN); aTUA1, TUBA1DIS1 (DISTORTED TRICHOMES ATARP3, ARP3, DIS1ARP2 (WURM); protein bindiARP2ACT3; structural constitueACT3TUA5; Encodes an isoform TUA5ATARP8 (ACTIN-RELATED PROATARP8, ARP8ATARP6 (ACTIN-RELATED PROATARP6, ARP6TUB6 (BETA-6 TUBULIN); EnTUB6, TUBB6ATARP4A; structural constATARP5, ARP5TUB5; beta tubulin TUB5, TUBB5ACT1 (ACTIN 1); structuralAAC1ACT12 (ACTIN-12); structurACT12ACT9 (ACTIN 9); motor/ prACT9ACT2 (ACTIN 2); structural constituent of cytoskeleton; Encodes an actin that iACT11 (ACTIN-11); structuACT11ACT4 (ACTIN 4); Encodes oACT4ATARP7 (ACTIN-RELATED PROATARP7, ARP7TUA3; tubulin 3 TUA3ATARP4 (ACTIN-RELATED PROTATARP4, ARP4TUA6; encodes alpha-tubuTUA6, DL3520C, TUBA6TUB4; beta tubulin gene TUB4, TUBB4ACT7; Member of Actin genACT2, ACT7ACT8 (ACTIN 8); motor/ proACT8TUB7; Encodes a beta-tubulTUB7, TUBB7RCP1 (ROOT CAP 1); EncodeRCP1, MEX1MBP2 (MYROSINASE-BINDING MBP2, F-ATMBPunknown protein; beta-Ig-H3 domain-containing protein / fasciclin domain-contunknown protein; beta-Ig-H3 domain-containing protein / fasciclin domain-contunknown protein; adhesion regulating molecule family, similar to oocyte memunknown protein; beta-Ig-H3 domain-containing protein / fasciclin domain-contSOS5 (SALT OVERLY SENSITIVSOS5GN (GNOM); Homologous to SGN, EMB30, GNOMunknown protein; beta-Ig-H3 domain-containing protein / fasciclin domain-contunknown protein; FG-GAP repeat-containing proteinVLN2 (VILLIN 2); actin bin VLN2PRF1 (PROFILIN 1); actin bPRF1, PFN1actin binding; profilin 4 PFN4, PRO4PRF4; actin binding; Profi PRF4, PFN3, PRO3PRF2 (PROFILIN 2); actin PRF2, PFN2, PRO2VLN3 (VILLIN 3); actin bin VLN3PRF3 (PROFILIN 3); actin PRF3, PRO5VLN1 (VILLIN 1); actin bin VLN1VLN4 (ARABIDOPSIS THALIANVLN4actin binding; villin, putative, similar to villin 2 (VLN2) (Arabidopsis thalianATCAP1 (CYCLASE ASSOCIAATCAP1, CAP1


Translation associated

AFH1 (FORMIN HOMOLOGY 1);AFH1, AHF1actin binding; F-actin capping protein alpha subunit family protein, contains PCRK (CROOKED); belongs to CRKactin binding; F-actin capping protein beta subunit family protein, contains PfADF1 (ACTIN DEPOLYMERIZINGADF1BRK1; Component of the WAVE protein complex which act as activators of ARP2WVD2; Encodes a novel proWVD2microtubule motor; dynein light chain type 1 family protein, similar to SP|O02ATP binding / microtubule motor; kinesin motor family protein, similar to AtNAmicrotubule motor; dynein light chain, putative, similar to SP|O02414 Dynein lmicrotubule motor; dynein DL4005Wmicrotubule motor; dynein light chain type 1 family protein, similar to SP|O02microtubule motor; dynein light chain, putative, similar to SP|O02414 Dynein lmicrotubule motor; dynein light chain, putative, similar to SP|O02414 Dynein lMOR1 (MICROTUBULE ORGANIZMOR1TON1A (TONNEAU 1); involvTON1ATTN5 (TITAN 5); GTP bindinARL2, TTN5ERH3 (ECTOPIC ROOT HAIR 3)AAA1, BOT1, FTR, KTN1TON1B (TONNEAU 1B); involTON1BAN (ANGUSTIFOLIA); EncodesANSPC98 (SPINDLE POLE BODY SPC98

ATP binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase; similar to protein kinase family protein [Arabidopsis thaliana] (TAIRATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase; protein kinase family protein, contains protein kinase domainATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase; protein kinase family protein, contains Pfam domain, PF00069

pectinesterase; pectinesterase family protein, similar to pectin methylesterase GI:1279597 from (Nicotiana plumbaginifolia); contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:At1g09360.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor (InterPro:IPR0071

VGD1 (VANGUARD1); enzyme inhibitor/ pectinesterase; Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.

enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitor

VGDH2; enzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor ;similar to pollen-specific pectin esterase GI:1620652 fr

enzyme inhibitor/ pectinesterase; pectinesterase family protein, similar to pectinesterase (EC 3.1.1.11) from Vitis vinifera GI:15081598, Lycopersicon esculentum SP|Q43143 SP|P14280; contains Pfam profile PF01095 pectinesterase

pectinesterase; pectinesterase family protein, similar to pectinesterase precursor GB:Q43043 (Petunia integrifolia); contains Pfam profile: PF01095 pectinesterase

enzyme inhibitor/ pectinesterase; pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains similarity to pectinesterase GB:AAB57671 (Citrus sinensis); contains Pfam profile: PF01095 pectinesteraseenzyme inhibitor/ pectinesterase; pectinesterase family protein, contains Pfam profiles: PF01095 pectinesterase,PF04043 plant invertase/pectin methylesterase inhibitor

enzyme inhibitor/ pectinesterase; pectinesterase family protein, similar to pectinesterase (EC 3.1.1.11) from Salix gilgiana GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF0109

pectinesterase; pectinesterase, putative, contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesterase

DNA repairGene Name

At5g57450 XRCC3; ATP binding / damaATXRCC3ALPHA, ATXRCC3At5g64520 XRCC2; Encodes a protein oXRCC2At5g41360 XPB2; ATP binding / ATP-deXPB2At5g41370 XPB1; ATP binding / ATP-deXPB1At3g15620 UVR3 (UV REPAIR DEFECTIVEUVR3At3g28030 UVH3 (ULTRAVIOLET HYPERSUVH3At5g41150 UVH1 (ULTRAVIOLET HYPERSUVH1At3g54670 TTN8 (TITAN8); ATP bindinTTN8At2g27170 TTN7 (TITAN7); ATP bindinTTN7At5g51330 SWI1 (SWITCH1); Encodes nSWI1, DYADAt3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1); involvedAt5g62410 SMC2 (STRUCTURAL MAINTSMC2, SMC4At2g36490 ROS1; A repressor of tran ROS1At2g31970 RAD50; ATP binding / nuclRAD50At1g79650 RAD23; damaged DNA bindiRAD23At2g47590 PHR2 (PHOTOLYASE/BLUE-LPHR2At1g12370 PHR1 (PHOTOLYASE 1); encodPHR1At4g02070 MSH6; encodes a DNA mismMSH6, MSH6-1At4g17380 MSH4 (MUTS-LIKE PROTEIN 4); ATP binding / damageAt4g25540 MSH3; encodes a DNA mismMSH3At5g54260 MRE11; endonuclease/ exoMRE11At5g61460 MIM; ATP binding; SMC-lik MIMAt1g77320 MEI1; transcription coactivator; Mutant is defectivAt1g48050 KU80; binds double strandKU80At1g16970 KU70; Ku70-like protein KU70At5g57300 S-adenosylmethionine-dependent methyltransferase/ At3g05210 ERCC1; DNA binding / da ERCC1At1g30480 DRT111; nucleic acid bin DRT111At3g04880 DRT102 (DNA-DAMAGE-REPAIDRT102At5g18070 DRT101 (DNA-DAMAGE-REPAIRDRT101At3g01540 DRH1; mRNA for DRH1, coDRH1At3g24320 CHM (CHLOROPLAST MUTATORCHMAt4g37010 calcium ion binding; similar to caltractin / centrin [Arabidopsis thaliana] (TAIR:At3g50360.1); similar to centrin [Nicotiana tabacAt3g09840 CDC48 (CELL DIVISION CYCLCDC48, CDC48AAt3g14890 DNA binding / catalytic; phosphoesterase, identical to phosphoesterase (Arabidopsis thaliana) GI:21630064; contains Pfam profilAt5g48600 ATSMC3; ATP binding; me ATSMC3At3g47460 ATSMC2; member of SMC ATSMC2At1g67500 ATREV3; DNA binding; EncoATREV3At2g45280 ATRAD51C; ATP binding / dATRAD51CALPHA, RAD51CAt5g20850 ATRAD51; ATP binding / DNATRAD51, RAD51At5g66130 ATRAD17 (RADIATION SENSIATRAD17At4g09140 ATMLH1; Encodes a proteinATMLH1At3g48190 ATM (ATAXIA-TELANGIECTASIATMAt5g57160 ATLIG4; DNA ligase IV, ideATLIG4At3g05200 ATL6; protein binding / ubATL6At3g22880 ATDMC1 (RECA-LIKE GENE); ATDMC1, DMC1, LIM15At4g21070 ATBRCA1; ubiquitin-proteinATBRCA1At5g65900 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334At5g57970 DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseAt5g54910 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative


At5g54090 ATP binding / damaged DNA binding; DNA mismatch repair MutS family protein, low similarity to SP|Q56239 DNA mismatch repair protein mutS {Thermus aquaticus; contains Pfam profile PF00488: MutS domain VAt5g51280 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD-box protein abstrakt, putativeAt5g50340 ATP binding / ATP-dependent peptidase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase; DNA repair protein-related, similar to RadA (Pseudomonas aeruginosa) GI:1881700At5g47010 RNA helicase; RNA helicase, putative, similar to type 1 RNA helicase pNORF1 (Homo sapiens) GI:1885356At5g44740 unknown protein; UMUC-like DNA repair family protein, low similarity to DNA polymerase eta (Homo sapiens) GI:11463971; contains Pfam profile PF00817: ImpB/MucB/SamB familyAt5g44680 DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseAt5g43210 nuclease; endo/excinuclease amino terminal domain-containing protein, contains Pfam domain PF01541: Endo/excinuclease amino terminal domainAt5g38470 damaged DNA binding; DNA ATRAD23-4ALPHAAt5g27680 ATP binding / ATP-dependeRECQSIMAt5g26742 EMB1138; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:At3g22330.1); similar to ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare] (GB:BAD21122.1); contains InterPro domain ZAt5g26680 5'-3' exonuclease/ DNA binding / nuclease; endonuclease, putative, similar to Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor 1) (MF1) (Homo sapiens)At5g22330 nucleoside-triphosphatase/ nucleotide binding; TATA box-binding protein-interacting protein-related, similar to TATA box-binding protein-interacting protein SP:O35753 from ( Mus musculus)At5g16630 damaged DNA binding; DNA repair protein Rad4 family, low similarity to SP|Q01831 DNA-repair protein complementing XP-C cells (Xeroderma pigmentosum group C complementing protein) {Homo sapiens}; contains Pfam profile PF03835: DNA repair protein Rad4At5g15920 ATP binding; structural m MSS2At5g14610 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.2); similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.1); similar to DEAD box RNA helicase (DRH1) [ArAt5g11350 catalytic; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyAt5g08620 ATP binding / ATP-dependeRH25At5g08110 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, several putative ATP-dependent helicasesAt5g07660 ATP binding; structural maintenance of chromosomes (SMC) family protein, similar to SMC-like protein (MIM) (Arabidopsis thaliana) GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domainAt5g05450 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative (RH18)At5g03340 ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48, putative, very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA faAt5g01310 transcription factor; basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain, weak hit to PF01661: Appr-1-p processing enzyme familyAt4g36050 nuclease; similar to apurinic endonuclease-redox protein / DNA-(apurinic or apyrimidinic site) lyase [Arabidopsis thaliana] (TAIR:At2g41460.1); similar to Hypothetical protein MGC55889 [Danio rerio] (GB:AAH44527.1); contains InterPro domain Endonuclease/exonuclease/phosphatase famAt4g35740 ATP binding / ATP-dependeRECQL3At4g35520 ATP binding; DNA mismatch repair family protein, similar to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch repaiAt4g33370 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD-box protein abstrakt, putative, RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272At4g31900 ATP binding / ATP-dependent helicase/ DNA binding / chromatin binding / helicase/ nucleic acid binding / transcription regulator; chromatin remodeling factor, putative, strong similarity to chromatin remodeling factor CHD3 (PICKLE) (Arabidopsis thaliana) GI:6478518; contains Pfam prAt4g31150 endonuclease; endonuclease V family protein, contains Pfam PF04493: Endonuclease VAt4g30870 endonuclease/ nuclease/ nucleic acid binding; similar to repair endonuclease family protein [Arabidopsis thaliana] (TAIR:At5g39770.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG90230.1); contains InterPro domain ERCC4 domain (InterPro:IPR006166)At4g25540 MSH3; encodes a DNA mismMSH3At4g25290 DNA photolyase; deoxyribodipyrimidine photolyase family protein / DNA photolyase family protein, contains Pfam domain, PF00875: deoxyribodipyrimidine photolyaseAt4g25120 ATP binding / ATP-dependent DNA helicase/ DNA binding; UvrD/REP helicase family protein, contains Pfam PF00580: UvrD/REP helicaseAt4g16630 ATP binding / ATP-dependeRH28At4g14180 unknown protein; expresseDL3130WAt4g12740 unknown protein; adenine-DNA glycosylase-related / MYH-related, similar to MYH (GI:18845094) (Rattus norvegicus); similar to adenine-DNA glycosylase (GI:12656850) (Mus musculus); contains TIGRFAM profile TIGR01084: A/G-specific adenine glycosylase (hits below the trusted cutoff)At4g09730 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, RNA helicase -Mus musculus,PIR2:I84741At4g02460 ATP binding; DNA mismatch repair protein, putative, similar to SP|P54278 PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch reAt3g58580 hydrolase; endonuclease/exonuclease/phosphatase family protein, similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/pAt3g58570 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 (Homo sapiens) GI:3523150; contains Pfam profiles PF00270: DEADAt3g58510 ATP binding / ATP-dependeRH11At3g53230 ATP binding / hydrolase/ nCDC48DAt3g50880 unknown protein; HhH-GPD base excision DNA repair family protein, contains weak similarity to DNA-3-methyladenine glycosylase 1 (EC 3.2.2.21) (3-methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1) (Swiss-Prot:Q92383) (Schizosaccharomyces pombe); contains Pfam profile At3g48900 DNA binding / nuclease; single-strand DNA endonuclease, putative, similar to single-strand DNA endonuclease-1 (Oryza sativa (japonica cultivar-group)) gi|16923283|dbj|BAB72003At3g48425 hydrolase/ nuclease; endonuclease/exonuclease/phosphatase family protein, similar to SP|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum}; contains Pfam profile PF03372: EndonucAt3g47830 unknown protein; HhH-GPD base excision DNA repair protein-relatedAt3g32920 ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding; recA family protein, contains Pfam profile: PF00154 recA bacterial DNA recombination proteinAt3g28030 UVH3 (ULTRAVIOLET HYPERSUVH3At3g24495 ATP binding / DNA bindingMSH6-2, MSH7At3g22330 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicases GI:3775995, GI:3775987 from (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domAt3g22310 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative (RH9), similar to RNA helicases GI:3775995, GI:3775987 (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal doAt3g21530 hydrolase; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyAt3g20475 ATP binding / damaged DNA binding; similar to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis thaliana] (TAIR:At4g25540.1); similar to hypothetical protein [Neurospora crassa] (GB:XP_332076.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal (InterProAt3g19210 ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein RAD54, putative, similar to RAD54 GB:CAA71278 from (Drosophila melanogaster) (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)

At3g18630 uracil DNA N-glycosylase; uracil DNA glycosylase family protein, contains Pfam profile: PF03167 uracil DNA glycosylase superfamilyAt3g18600 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from (Homo sapiens), contains Pfam profile: PF00270 DEAD/DEAH box helicaseAt3g18524 MSH2 (MUTS HOMOLOG 2); AMSH2At3g15960 ATP binding / DNA binding; DNA mismatch repair MutS family protein, contains Pfam profile PF05188: MutS domain IIAt3g15950 unknown protein; similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.2); similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.1); similar to hypothetical protein FG09227.1 [Gibberella zeae PH-1] (GB:EAA76462.1)At3g13226 unknown protein; regulatory protein RecX family protein, contains Pfam PF02631: regulatory protein RecXAt3g13170 ATP binding / DNA bindingSPO11At3g12710 DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseAt3g12040 DNA binding / alkylbase DMAGAt3g10420 ATP binding / nucleoside-triphosphatase/ nucleotide binding; sporulation protein-related, similar to hypothetical proteins: GB:P51281 (Chloroplast Porphyra purpurea), GB:BAA16982 (Synechocystis sp), GB:P49540 (Odontella sinensis), GB:AAB82669 (Chloroplast Cyanidium caldarium); similar At3g10140 ATP binding / DNA binding / DNA-dependent ATPase; recA family protein, contains Pfam profile: PF00154 recA bacterial DNA recombination proteinAt3g10010 endonuclease/ iron ion binding; HhH-GPD base excision DNA repair family protein, similar to DEMETER protein (Arabidopsis thaliana) GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair proteinAt3g09620 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase GB:A57514 GI:897915 from (Rattus norvegicus); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainAt3g09100 mRNA guanylyltransferase/ phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase; mRNA capping enzyme family protein, similar to mRNA capping enzyme (Xenopus laevis) GI:7239232; contains Pfam profiles PF01331: mRNA capping enzyme catalytic domain, PF007At3g07930 unknown protein; HhH-GPD base excision DNA repair family proteinAt3g06480 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase DRH1 (Arabidopsis thaliana) GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF0039At3g05740 ATP binding / ATP-dependenRECQL1At3g05480 unknown protein; cell cycle checkpoint control protein family, contains Pfam profile PF04139: Rad9; contains Prosite PS00976: Myristoyl-CoA:protein N-myristoyltransferase signature 2; similar to radio-resistance/chemo-resistance/cell cycle checkpoint control protein (GI:3869274) (Mus At3g02540 unknown protein; ubiquiti ATRAD23-3ALPHAAt3g02060 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / transcription factor; DEAD/DEAH box helicase, putative, similar to C-terminal half of transcription-repair coupling factor (TRCF) GB:Q55750 (Synechocystis PCC6803); contains Pfam profile: helicases conserved C-termiAt2g48030 hydrolase; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyAt2g47330 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase (Rattus norvegicus) GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainAt2g45700 unknown protein; sterile alpha motif (SAM) domain-containing protein, similar to SNM1 protein (Mus musculus) GI:7595835; contains Pfam profile PF00536: SAM domain (Sterile alpha motif)At2g33730 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserAt2g31450 DNA binding / endonuclease/ iron ion binding; endonuclease-related, similar to endonuclease III (Homo sapiens) GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motifAt2g30350 nuclease; endo/excinuclease amino terminal domain-containing protein, contains Pfam domain PF01541: Endo/excinuclease amino terminal domainAt2g21650 DNA binding / transcription factor; myb family transcription factor, contains PFAM profile: PF00249 myb-like DNA-binding domainAt2g19490 ATP binding / DNA bindingRECAAt2g07750 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase RH25 (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainAt2g03390 DNA binding / nuclease; uvrB/uvrC motif-containing protein, contains Pfam profile PF02151: UvrB/uvrC motifAt2g03270 ATP binding / ATP-dependent helicase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; DNA-binding protein, putative, similar to Swiss-Prot:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein)(RIPE3B-binding complex 3B2 P110 subunit) (RIP-1)(Mesocricetus auratus); identical to putative helicase (atpc-2 gene) cDNA NCBI_gi:11191230At2g02550 DNA binding / nuclease; exonuclease family protein, contains similarity to exonuclease I (Homo sapiens) gi|4249655|gb|AAD13754At2g01440 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; ATP-dependent DNA helicase, putativeAt1g80850 DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseAt1g80420 transcription coactivator; DNA repair protein, putative (XRCC1), identical to putative DNA repair protein XRCC1 (Arabidopsis thaliana) GI:11181954; contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domainAt1g79950 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).; contains similarity to helicase-like protein NHL GI:6969265 from (Homo sapiens)At1g79890 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to CHL1 potential helicase protein (GI:2632247) (Homo sapiens); similar to helicase GB:AAB06962 (Homo sapiens)At1g79050 ATP binding / DNA bindingRECAAt1g77470 ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 36 kDA, putative, similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) (Homo sapiens)At1g75230 unknown protein; HhH-GPD base excision DNA repair family protein, contains Pfam domain PF00730: HhH-GPD superfamily base excision DNA repair proteinAt1g75090 DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseAt1g71370 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae)At1g66730 ATP binding / DNA ligase (ATP); ATP dependent DNA ligase family protein, contains Pfam profile: PF01068 ATP dependent DNA ligase domainAt1g65070 ATP binding / damaged DNA binding; DNA mismatch repair MutS family protein, contains Pfam profile PF00488: MutS domain VAt1g63990 ATP binding / DNA bindingSPO11At1g63250 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase (RH25) (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainAt1g60930 ATP binding / ATP-dependent helicase/ DNA helicase/ helicase/ nucleic acid binding; DNA helicase, putative, strong similarity to DNA Helicase recQl4B (Arabidopsis thaliana) GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00570: HRDC domainAt1g50410 ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)At1g49980 unknown protein; similar to UMUC-like DNA repair family protein [Arabidopsis thaliana] (TAIR:At5g44740.2); similar to putative DNA-directed polymerase, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81654.1); contains InterPro domain UMUC-like DNA-repair protein (InterPro:IPR001126)At1g49250 ATP binding / DNA ligase (ATP); ATP dependent DNA ligase family protein, contains Pfam profile: PF01068 ATP dependent DNA ligase domainAt1g31530 hydrolase; endonuclease/exonuclease/phosphatase family protein, contains similarity to nocturnin (Homo sapiens) GI:9885288; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyAt1g31500 hydrolase; similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:At1g31530.1); similar to SPCC31H12.08c [Schizosaccharomyces pombe] (GB:CAA21225.1); contains InterPro domain Endonuclease/exonuclease/phosphatase family (InterPro:IPR005135)At1g31360 ATP binding / ATP-dependenRECQL2

At1g29630 DNA binding / nuclease; exonuclease, putative, similar to Swiss-Prot:P53695 exonuclease I (EXO I) (Schizosaccharomyces pombe)At1g27880 ATP binding / ATP-dependeRQL-5At1g27410 unknown protein; DNA cross-link repair protein-related, contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 (Saccharomyces cerevisiae)At1g21710 OGG1; Encodes 8-oxoguanOGG1At1g21690 EMB1968; ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 37 kDa, putative, Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) (Homo sapiens); contains Pfam domain, PF00004: ATPase, AAA familyAt1g20750 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;At1g20720 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;At1g19025 unknown protein; DNA cross-link repair protein-related, contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 (Saccharomyces cerevisiae)At1g18090 DNA binding / nuclease; exonuclease, putative, similar to Swiss-Prot:P53695 exonuclease I (EXO I) (Schizosaccharomyces pombe)At1g16190 damaged DNA binding; DNA repair protein RAD23, putative, similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from (Daucus carota)At1g15970 DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseAt1g14460 nucleoside-triphosphatase/ nucleotide binding; DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049At1g14460 nucleoside-triphosphatase/ nucleotide binding; DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049At1g13635 DNA-3-methyladenine glycosylase I/ catalytic; methyladenine glycosylase family protein, Contains Pfam profile PF03352: Methyladenine glycosylaseAt1g12370 PHR1 (PHOTOLYASE 1); encodPHR1At1g10930 ATSGS1; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DNA helicase (RECQl4A), nearly identical to DNA Helicase (Arabidopsis thaliana) GI:11121449At1g10520 DNA binding / DNA-directed DNA polymerase/ beta DNA polymerase/ lambda DNA polymerase; DNA polymerase lambda (POLL), identical to DNA polymerase lambda GI:12053869 from (Arabidopsis thaliana)At1g08130 ATP binding / DNA ligase (ATP); DNA ligase / polydeoxyribonucleotide synthase (ATP), identical to SP|Q42572 DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase (ATP)) {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminusAt1g03190 UVH6 (ULTRAVIOLET HYPERSEUVH6At1g02670 ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein, putative, similar to SP|P79051 DNA repair protein rhp16 (RAD16 homolog) {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domainAt1g01880 DNA binding / nuclease; DNA repair protein, putative, similar to Swiss-Prot:P28706 DNA repair protein rad13 (Schizosaccharomyces pombe); similar to UV hypersensitive protein (Arabidopsis thaliana) gi|13649704|gb|AAK37472

RespirationGene Name

At1g22020 glycine hydroxymethyltransferase; glycine hydroxymeAt2g20800 NADH dehydrogenase; pyridine nucleotide-disulphide At2g30390 ferrochelatase; ferrochelatase II, identical to SwissAt3g04150 nutrient reservoir; germin-like protein, putative, At3g04170 nutrient reservoir; germin-like protein, putative, At3g04180 nutrient reservoir; germin-like protein, putative, cAt3g04190 nutrient reservoir; germin-like protein, putative, cAt3g04200 nutrient reservoir; germin-like protein, putative, cAt3g05950 nutrient reservoir; germin-like protein, putative, sAt3g14130 glycolate oxidase/ oxidoreductase; (S)-2-hydroxy-aciAt3g14150 glycolate oxidase/ oxidoreductase; (S)-2-hydroxy-aciAt3g14420 glycolate oxidase/ oxidoreductase; similar to (S)-2At3g52730 ubiquinol-cytochrome-c reductase; ubiquinol-cytocAt4g01380 copper ion binding / electron transporter; plastocyaAt4g02580 NADH dehydrogenase (ubiquinone); NADH-ubiquinone oAt4g03280 PETC (PHOTOSYNTHETIC ELECPETC, PGR1At4g04950 electron transporter; thioredoxin family protein, sAt4g05020 calcium ion binding / disulfide oxidoreductase; NAAt4g10040 electron carrier/ electron transporter; cytochrome At4g14630 GLP9 (GERMIN-LIKE PROTEINGLP9, DL3355WAt4g18360 glycolate oxidase/ oxidoreductase; (S)-2-hydroxy-aciAt4g21490 NADH dehydrogenase; pyridine nucleotide-disulphideAt4g25835 ATP binding / ATPase/ nucleoside-triphosphatase/ nuAt4g28220 NADH dehydrogenase/ disulfide oxidoreductase; NADAt4g32520 glycine hydroxymethyltransferase; glycine hydroxymeAt5g08740 NADH dehydrogenase/ disulfide oxidoreductase/ oxidAt5g17740 ATP binding / ATPase/ nucleoside-triphosphatase/ At5g20080 cytochrome-b5 reductase/ oxidoreductase; NADH-cytAt5g26030 ferrochelatase; similar to HEM15At5g57480 ATP binding / ATPase/ nucleoside-triphosphatase/ nuAt5g58970 ATUCP2 (UNCOUPLING PROTEATUCP2

calcium ion binding; similar to caltractin / centrin [Arabidopsis thaliana] (TAIR:At3g50360.1); similar to centrin [Nicotiana tabac

DNA binding / catalytic; phosphoesterase, identical to phosphoesterase (Arabidopsis thaliana) GI:21630064; contains Pfam profil

ATRAD51CALPHA, RAD51C

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative


ATP binding / damaged DNA binding; DNA mismatch repair MutS family protein, low similarity to SP|Q56239 DNA mismatch repair protein mutS {Thermus aquaticus; contains Pfam profile PF00488: MutS domain VATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD-box protein abstrakt, putativeATP binding / ATP-dependent peptidase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase; DNA repair protein-related, similar to RadA (Pseudomonas aeruginosa) GI:1881700RNA helicase; RNA helicase, putative, similar to type 1 RNA helicase pNORF1 (Homo sapiens) GI:1885356unknown protein; UMUC-like DNA repair family protein, low similarity to DNA polymerase eta (Homo sapiens) GI:11463971; contains Pfam profile PF00817: ImpB/MucB/SamB familyDNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasenuclease; endo/excinuclease amino terminal domain-containing protein, contains Pfam domain PF01541: Endo/excinuclease amino terminal domain

EMB1138; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:At3g22330.1); similar to ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare] (GB:BAD21122.1); contains InterPro domain Z5'-3' exonuclease/ DNA binding / nuclease; endonuclease, putative, similar to Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor 1) (MF1) (Homo sapiens)nucleoside-triphosphatase/ nucleotide binding; TATA box-binding protein-interacting protein-related, similar to TATA box-binding protein-interacting protein SP:O35753 from ( Mus musculus)damaged DNA binding; DNA repair protein Rad4 family, low similarity to SP|Q01831 DNA-repair protein complementing XP-C cells (Xeroderma pigmentosum group C complementing protein) {Homo sapiens}; contains Pfam profile PF03835: DNA repair protein Rad4

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.2); similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.1); similar to DEAD box RNA helicase (DRH1) [Arcatalytic; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, several putative ATP-dependent helicasesATP binding; structural maintenance of chromosomes (SMC) family protein, similar to SMC-like protein (MIM) (Arabidopsis thaliana) GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domainATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative (RH18)ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48, putative, very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA fatranscription factor; basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain, weak hit to PF01661: Appr-1-p processing enzyme familynuclease; similar to apurinic endonuclease-redox protein / DNA-(apurinic or apyrimidinic site) lyase [Arabidopsis thaliana] (TAIR:At2g41460.1); similar to Hypothetical protein MGC55889 [Danio rerio] (GB:AAH44527.1); contains InterPro domain Endonuclease/exonuclease/phosphatase fam

ATP binding; DNA mismatch repair family protein, similar to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch repaiATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD-box protein abstrakt, putative, RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272ATP binding / ATP-dependent helicase/ DNA binding / chromatin binding / helicase/ nucleic acid binding / transcription regulator; chromatin remodeling factor, putative, strong similarity to chromatin remodeling factor CHD3 (PICKLE) (Arabidopsis thaliana) GI:6478518; contains Pfam prendonuclease; endonuclease V family protein, contains Pfam PF04493: Endonuclease Vendonuclease/ nuclease/ nucleic acid binding; similar to repair endonuclease family protein [Arabidopsis thaliana] (TAIR:At5g39770.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG90230.1); contains InterPro domain ERCC4 domain (InterPro:IPR006166)

DNA photolyase; deoxyribodipyrimidine photolyase family protein / DNA photolyase family protein, contains Pfam domain, PF00875: deoxyribodipyrimidine photolyaseATP binding / ATP-dependent DNA helicase/ DNA binding; UvrD/REP helicase family protein, contains Pfam PF00580: UvrD/REP helicase

unknown protein; adenine-DNA glycosylase-related / MYH-related, similar to MYH (GI:18845094) (Rattus norvegicus); similar to adenine-DNA glycosylase (GI:12656850) (Mus musculus); contains TIGRFAM profile TIGR01084: A/G-specific adenine glycosylase (hits below the trusted cutoff)ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, RNA helicase -Mus musculus,PIR2:I84741ATP binding; DNA mismatch repair protein, putative, similar to SP|P54278 PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch rehydrolase; endonuclease/exonuclease/phosphatase family protein, similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/pATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 (Homo sapiens) GI:3523150; contains Pfam profiles PF00270: DEAD

unknown protein; HhH-GPD base excision DNA repair family protein, contains weak similarity to DNA-3-methyladenine glycosylase 1 (EC 3.2.2.21) (3-methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1) (Swiss-Prot:Q92383) (Schizosaccharomyces pombe); contains Pfam profile DNA binding / nuclease; single-strand DNA endonuclease, putative, similar to single-strand DNA endonuclease-1 (Oryza sativa (japonica cultivar-group)) gi|16923283|dbj|BAB72003hydrolase/ nuclease; endonuclease/exonuclease/phosphatase family protein, similar to SP|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum}; contains Pfam profile PF03372: Endonucunknown protein; HhH-GPD base excision DNA repair protein-relatedATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding; recA family protein, contains Pfam profile: PF00154 recA bacterial DNA recombination protein

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicases GI:3775995, GI:3775987 from (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative (RH9), similar to RNA helicases GI:3775995, GI:3775987 (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal dohydrolase; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyATP binding / damaged DNA binding; similar to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis thaliana] (TAIR:At4g25540.1); similar to hypothetical protein [Neurospora crassa] (GB:XP_332076.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal (InterProATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein RAD54, putative, similar to RAD54 GB:CAA71278 from (Drosophila melanogaster) (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)

uracil DNA N-glycosylase; uracil DNA glycosylase family protein, contains Pfam profile: PF03167 uracil DNA glycosylase superfamilyATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from (Homo sapiens), contains Pfam profile: PF00270 DEAD/DEAH box helicase

ATP binding / DNA binding; DNA mismatch repair MutS family protein, contains Pfam profile PF05188: MutS domain IIunknown protein; similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.2); similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.1); similar to hypothetical protein FG09227.1 [Gibberella zeae PH-1] (GB:EAA76462.1)unknown protein; regulatory protein RecX family protein, contains Pfam PF02631: regulatory protein RecX

DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase

ATP binding / nucleoside-triphosphatase/ nucleotide binding; sporulation protein-related, similar to hypothetical proteins: GB:P51281 (Chloroplast Porphyra purpurea), GB:BAA16982 (Synechocystis sp), GB:P49540 (Odontella sinensis), GB:AAB82669 (Chloroplast Cyanidium caldarium); similar ATP binding / DNA binding / DNA-dependent ATPase; recA family protein, contains Pfam profile: PF00154 recA bacterial DNA recombination proteinendonuclease/ iron ion binding; HhH-GPD base excision DNA repair family protein, similar to DEMETER protein (Arabidopsis thaliana) GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair proteinATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase GB:A57514 GI:897915 from (Rattus norvegicus); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainmRNA guanylyltransferase/ phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase; mRNA capping enzyme family protein, similar to mRNA capping enzyme (Xenopus laevis) GI:7239232; contains Pfam profiles PF01331: mRNA capping enzyme catalytic domain, PF007unknown protein; HhH-GPD base excision DNA repair family proteinATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase DRH1 (Arabidopsis thaliana) GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF0039

unknown protein; cell cycle checkpoint control protein family, contains Pfam profile PF04139: Rad9; contains Prosite PS00976: Myristoyl-CoA:protein N-myristoyltransferase signature 2; similar to radio-resistance/chemo-resistance/cell cycle checkpoint control protein (GI:3869274) (Mus

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / transcription factor; DEAD/DEAH box helicase, putative, similar to C-terminal half of transcription-repair coupling factor (TRCF) GB:Q55750 (Synechocystis PCC6803); contains Pfam profile: helicases conserved C-termihydrolase; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase (Rattus norvegicus) GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainunknown protein; sterile alpha motif (SAM) domain-containing protein, similar to SNM1 protein (Mus musculus) GI:7595835; contains Pfam profile PF00536: SAM domain (Sterile alpha motif)ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserDNA binding / endonuclease/ iron ion binding; endonuclease-related, similar to endonuclease III (Homo sapiens) GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motifnuclease; endo/excinuclease amino terminal domain-containing protein, contains Pfam domain PF01541: Endo/excinuclease amino terminal domainDNA binding / transcription factor; myb family transcription factor, contains PFAM profile: PF00249 myb-like DNA-binding domain

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase RH25 (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainDNA binding / nuclease; uvrB/uvrC motif-containing protein, contains Pfam profile PF02151: UvrB/uvrC motifATP binding / ATP-dependent helicase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; DNA-binding protein, putative, similar to Swiss-Prot:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein)(RIPE3B-binding complex 3B2 P110 subunit) (RIP-1)(Mesocricetus auratus); identical to putative helicase (atpc-2 gene) cDNA NCBI_gi:11191230DNA binding / nuclease; exonuclease family protein, contains similarity to exonuclease I (Homo sapiens) gi|4249655|gb|AAD13754ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; ATP-dependent DNA helicase, putativeDNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasetranscription coactivator; DNA repair protein, putative (XRCC1), identical to putative DNA repair protein XRCC1 (Arabidopsis thaliana) GI:11181954; contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domainATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).; contains similarity to helicase-like protein NHL GI:6969265 from (Homo sapiens)ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to CHL1 potential helicase protein (GI:2632247) (Homo sapiens); similar to helicase GB:AAB06962 (Homo sapiens)

ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 36 kDA, putative, similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) (Homo sapiens)unknown protein; HhH-GPD base excision DNA repair family protein, contains Pfam domain PF00730: HhH-GPD superfamily base excision DNA repair proteinDNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae)ATP binding / DNA ligase (ATP); ATP dependent DNA ligase family protein, contains Pfam profile: PF01068 ATP dependent DNA ligase domainATP binding / damaged DNA binding; DNA mismatch repair MutS family protein, contains Pfam profile PF00488: MutS domain V

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase (RH25) (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainATP binding / ATP-dependent helicase/ DNA helicase/ helicase/ nucleic acid binding; DNA helicase, putative, strong similarity to DNA Helicase recQl4B (Arabidopsis thaliana) GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00570: HRDC domainATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)unknown protein; similar to UMUC-like DNA repair family protein [Arabidopsis thaliana] (TAIR:At5g44740.2); similar to putative DNA-directed polymerase, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81654.1); contains InterPro domain UMUC-like DNA-repair protein (InterPro:IPR001126)ATP binding / DNA ligase (ATP); ATP dependent DNA ligase family protein, contains Pfam profile: PF01068 ATP dependent DNA ligase domainhydrolase; endonuclease/exonuclease/phosphatase family protein, contains similarity to nocturnin (Homo sapiens) GI:9885288; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyhydrolase; similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:At1g31530.1); similar to SPCC31H12.08c [Schizosaccharomyces pombe] (GB:CAA21225.1); contains InterPro domain Endonuclease/exonuclease/phosphatase family (InterPro:IPR005135)

DNA binding / nuclease; exonuclease, putative, similar to Swiss-Prot:P53695 exonuclease I (EXO I) (Schizosaccharomyces pombe)

unknown protein; DNA cross-link repair protein-related, contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 (Saccharomyces cerevisiae)

EMB1968; ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 37 kDa, putative, Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) (Homo sapiens); contains Pfam domain, PF00004: ATPase, AAA familyATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;unknown protein; DNA cross-link repair protein-related, contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 (Saccharomyces cerevisiae)DNA binding / nuclease; exonuclease, putative, similar to Swiss-Prot:P53695 exonuclease I (EXO I) (Schizosaccharomyces pombe)damaged DNA binding; DNA repair protein RAD23, putative, similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from (Daucus carota)DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasenucleoside-triphosphatase/ nucleotide binding; DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049nucleoside-triphosphatase/ nucleotide binding; DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049DNA-3-methyladenine glycosylase I/ catalytic; methyladenine glycosylase family protein, Contains Pfam profile PF03352: Methyladenine glycosylase

ATSGS1; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DNA helicase (RECQl4A), nearly identical to DNA Helicase (Arabidopsis thaliana) GI:11121449DNA binding / DNA-directed DNA polymerase/ beta DNA polymerase/ lambda DNA polymerase; DNA polymerase lambda (POLL), identical to DNA polymerase lambda GI:12053869 from (Arabidopsis thaliana)ATP binding / DNA ligase (ATP); DNA ligase / polydeoxyribonucleotide synthase (ATP), identical to SP|Q42572 DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase (ATP)) {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminus

ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein, putative, similar to SP|P79051 DNA repair protein rhp16 (RAD16 homolog) {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domainDNA binding / nuclease; DNA repair protein, putative, similar to Swiss-Prot:P28706 DNA repair protein rad13 (Schizosaccharomyces pombe); similar to UV hypersensitive protein (Arabidopsis thaliana) gi|13649704|gb|AAK37472

Electron TransportGene Name

At1g03020 arsenate reductase (glutaredoxin)/ electron transpoAt1g06830 electron transporter/ thiol-disulfide exchange inteAt1g16700 NADH dehydrogenase (ubiquinone)/ electron transportAt1g22840 electron carrier/ electron transporter; cytochrome At1g79010 NADH dehydrogenase (ubiquTYKYAt2g07687 cytochrome-c oxidase; cytochrome c oxidase subunit 3At2g30540 electron transporter/ thiol-disulfide exchange inteAt2g47380 cytochrome-c oxidase; cytochrome c oxidase subunitAt2g47880 arsenate reductase (glutaredoxin)/ electron transpoAt3g02000 ROXY1; electron transporter/ thiol-disulfide exchangeAt3g06310 NADH dehydrogenase (ubiquinone); NADH-ubiquinone At3g09840 CDC48 (CELL DIVISION CYCLCDC48, CDC48AAt3g13640 ATRLI1; member of RLI su ATRLI1At3g17240 LPD2 (LIPOAMIDE DEHYDROGLPD2At3g21460 glutaredoxin, putativeAt3g51790 ATG1; putative transmem ATG1At3g60270 copper ion binding / electron transporter; uclacyanin, putative, similar to uclacyanin 3 GI:3395770 from (Arabidopsis thaliana); coAt3g60280 UCC3 (UCLACYANIN 3); coppUCC3At3g62400 unknown protein; expressed protein, cytochrome c oxidase subunit 5c - Oryza sativa, EMBL:AB027123At4g15660 arsenate reductase (glutarDL3870WAt4g32470 ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase complex 14 kDa protein, putative, similar to SP|P48502 UbAt4g37200 HCF164; thiol-disulfide ex HCF164At5g03340 ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48,At5g08530 FMN binding / NADH dehydrogenase (ubiquinone)/ iron ion binding; NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrialAt5g13430 oxidoreductase/ ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative At5g13440 oxidoreductase/ ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative At5g14070 electron transporter/ thiol-disulfide exchange intermediate; glutaredoxin family protein, contains INTERPRO Domain IPR002109, GluAt5g18800 NADH dehydrogenase (ubiquinone); NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein, contains Pfam profAt5g25450 ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase complex 14 kDa protein, putative, similar to SP|P48502 UbAt5g37510 EMB1467; NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron transporter/ iron ion binding / oxidoreductase; NADHAt5g43430 electron transporter; electron transfer flavoprotein beta subunit family protein, contains Pfam profile: PF01012 electron transfer flAt1g16700 NADH dehydrogenase (ubiquinone)/ electron transporter/ iron ion binding; NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochonAt1g22840 electron carrier/ electron transporter; cytochrome c, putative, similar to cytochrome c (Pumpkin, Winter squash) SWISS-PROT:P00At1g79010 NADH dehydrogenase (ubiquTYKYAt2g47380 cytochrome-c oxidase; cytochrome c oxidase subunit Vc family protein / COX5C family protein, contains Pfam profile: PF05799 cyAt3g09840 CDC48 (CELL DIVISION CYCLCDC48, CDC48AAt3g51790 ATG1; putative transmem ATG1At3g54890 LHCA1; chlorophyll A-B binCAB6, LHCA1At3g62400 unknown protein; expressed protein, cytochrome c oxidase subunit 5c - Oryza sativa, EMBL:AB027123At4g10340 LHCB5 (LIGHT HARVESTING CLHCB5At4g32470 ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase complex 14 kDa protein, putative, similar to SP|P48502 UbAt5g03340 ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48,At5g08530 FMN binding / NADH dehydrogenase (ubiquinone)/ iron ion binding; NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrialAt5g43430 electron transporter; electron transfer flavoprotein beta subunit family protein, contains Pfam profile: PF01012 electron transfer fl

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase


ATP binding / damaged DNA binding; DNA mismatch repair MutS family protein, low similarity to SP|Q56239 DNA mismatch repair protein mutS {Thermus aquaticus; contains Pfam profile PF00488: MutS domain V

ATP binding / ATP-dependent peptidase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase; DNA repair protein-related, similar to RadA (Pseudomonas aeruginosa) GI:1881700

unknown protein; UMUC-like DNA repair family protein, low similarity to DNA polymerase eta (Homo sapiens) GI:11463971; contains Pfam profile PF00817: ImpB/MucB/SamB familyDNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasenuclease; endo/excinuclease amino terminal domain-containing protein, contains Pfam domain PF01541: Endo/excinuclease amino terminal domain

EMB1138; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:At3g22330.1); similar to ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare] (GB:BAD21122.1); contains InterPro domain Z5'-3' exonuclease/ DNA binding / nuclease; endonuclease, putative, similar to Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor 1) (MF1) (Homo sapiens)nucleoside-triphosphatase/ nucleotide binding; TATA box-binding protein-interacting protein-related, similar to TATA box-binding protein-interacting protein SP:O35753 from ( Mus musculus)damaged DNA binding; DNA repair protein Rad4 family, low similarity to SP|Q01831 DNA-repair protein complementing XP-C cells (Xeroderma pigmentosum group C complementing protein) {Homo sapiens}; contains Pfam profile PF03835: DNA repair protein Rad4

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.2); similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.1); similar to DEAD box RNA helicase (DRH1) [Arcatalytic; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, several putative ATP-dependent helicasesATP binding; structural maintenance of chromosomes (SMC) family protein, similar to SMC-like protein (MIM) (Arabidopsis thaliana) GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domain

ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48, putative, very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA fatranscription factor; basic helix-loop-helix (bHLH) family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain, weak hit to PF01661: Appr-1-p processing enzyme familynuclease; similar to apurinic endonuclease-redox protein / DNA-(apurinic or apyrimidinic site) lyase [Arabidopsis thaliana] (TAIR:At2g41460.1); similar to Hypothetical protein MGC55889 [Danio rerio] (GB:AAH44527.1); contains InterPro domain Endonuclease/exonuclease/phosphatase fam

ATP binding; DNA mismatch repair family protein, similar to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch repaiATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD-box protein abstrakt, putative, RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272ATP binding / ATP-dependent helicase/ DNA binding / chromatin binding / helicase/ nucleic acid binding / transcription regulator; chromatin remodeling factor, putative, strong similarity to chromatin remodeling factor CHD3 (PICKLE) (Arabidopsis thaliana) GI:6478518; contains Pfam pr

endonuclease/ nuclease/ nucleic acid binding; similar to repair endonuclease family protein [Arabidopsis thaliana] (TAIR:At5g39770.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG90230.1); contains InterPro domain ERCC4 domain (InterPro:IPR006166)

DNA photolyase; deoxyribodipyrimidine photolyase family protein / DNA photolyase family protein, contains Pfam domain, PF00875: deoxyribodipyrimidine photolyaseATP binding / ATP-dependent DNA helicase/ DNA binding; UvrD/REP helicase family protein, contains Pfam PF00580: UvrD/REP helicase

unknown protein; adenine-DNA glycosylase-related / MYH-related, similar to MYH (GI:18845094) (Rattus norvegicus); similar to adenine-DNA glycosylase (GI:12656850) (Mus musculus); contains TIGRFAM profile TIGR01084: A/G-specific adenine glycosylase (hits below the trusted cutoff)ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, RNA helicase -Mus musculus,PIR2:I84741ATP binding; DNA mismatch repair protein, putative, similar to SP|P54278 PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch rehydrolase; endonuclease/exonuclease/phosphatase family protein, similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/pATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 (Homo sapiens) GI:3523150; contains Pfam profiles PF00270: DEAD

unknown protein; HhH-GPD base excision DNA repair family protein, contains weak similarity to DNA-3-methyladenine glycosylase 1 (EC 3.2.2.21) (3-methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1) (Swiss-Prot:Q92383) (Schizosaccharomyces pombe); contains Pfam profile DNA binding / nuclease; single-strand DNA endonuclease, putative, similar to single-strand DNA endonuclease-1 (Oryza sativa (japonica cultivar-group)) gi|16923283|dbj|BAB72003hydrolase/ nuclease; endonuclease/exonuclease/phosphatase family protein, similar to SP|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum}; contains Pfam profile PF03372: Endonuc

ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding; recA family protein, contains Pfam profile: PF00154 recA bacterial DNA recombination protein

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicases GI:3775995, GI:3775987 from (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative (RH9), similar to RNA helicases GI:3775995, GI:3775987 (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal dohydrolase; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyATP binding / damaged DNA binding; similar to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis thaliana] (TAIR:At4g25540.1); similar to hypothetical protein [Neurospora crassa] (GB:XP_332076.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal (InterProATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein RAD54, putative, similar to RAD54 GB:CAA71278 from (Drosophila melanogaster) (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)

uracil DNA N-glycosylase; uracil DNA glycosylase family protein, contains Pfam profile: PF03167 uracil DNA glycosylase superfamilyATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from (Homo sapiens), contains Pfam profile: PF00270 DEAD/DEAH box helicase

unknown protein; similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.2); similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.1); similar to hypothetical protein FG09227.1 [Gibberella zeae PH-1] (GB:EAA76462.1)


ATP binding / nucleoside-triphosphatase/ nucleotide binding; sporulation protein-related, similar to hypothetical proteins: GB:P51281 (Chloroplast Porphyra purpurea), GB:BAA16982 (Synechocystis sp), GB:P49540 (Odontella sinensis), GB:AAB82669 (Chloroplast Cyanidium caldarium); similar ATP binding / DNA binding / DNA-dependent ATPase; recA family protein, contains Pfam profile: PF00154 recA bacterial DNA recombination proteinendonuclease/ iron ion binding; HhH-GPD base excision DNA repair family protein, similar to DEMETER protein (Arabidopsis thaliana) GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair proteinATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase GB:A57514 GI:897915 from (Rattus norvegicus); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainmRNA guanylyltransferase/ phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase; mRNA capping enzyme family protein, similar to mRNA capping enzyme (Xenopus laevis) GI:7239232; contains Pfam profiles PF01331: mRNA capping enzyme catalytic domain, PF007

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase DRH1 (Arabidopsis thaliana) GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF0039


ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / transcription factor; DEAD/DEAH box helicase, putative, similar to C-terminal half of transcription-repair coupling factor (TRCF) GB:Q55750 (Synechocystis PCC6803); contains Pfam profile: helicases conserved C-termihydrolase; endonuclease/exonuclease/phosphatase family protein, contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase (Rattus norvegicus) GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainunknown protein; sterile alpha motif (SAM) domain-containing protein, similar to SNM1 protein (Mus musculus) GI:7595835; contains Pfam profile PF00536: SAM domain (Sterile alpha motif)ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserDNA binding / endonuclease/ iron ion binding; endonuclease-related, similar to endonuclease III (Homo sapiens) GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motifnuclease; endo/excinuclease amino terminal domain-containing protein, contains Pfam domain PF01541: Endo/excinuclease amino terminal domain

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase RH25 (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain

ATP binding / ATP-dependent helicase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; DNA-binding protein, putative, similar to Swiss-Prot:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein)(RIPE3B-binding complex 3B2 P110 subunit) (RIP-1)(Mesocricetus auratus); identical to putative helicase (atpc-2 gene) cDNA NCBI_gi:11191230DNA binding / nuclease; exonuclease family protein, contains similarity to exonuclease I (Homo sapiens) gi|4249655|gb|AAD13754ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; ATP-dependent DNA helicase, putativeDNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasetranscription coactivator; DNA repair protein, putative (XRCC1), identical to putative DNA repair protein XRCC1 (Arabidopsis thaliana) GI:11181954; contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domainATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).; contains similarity to helicase-like protein NHL GI:6969265 from (Homo sapiens)ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to CHL1 potential helicase protein (GI:2632247) (Homo sapiens); similar to helicase GB:AAB06962 (Homo sapiens)

ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 36 kDA, putative, similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) (Homo sapiens)unknown protein; HhH-GPD base excision DNA repair family protein, contains Pfam domain PF00730: HhH-GPD superfamily base excision DNA repair proteinDNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylaseATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae)ATP binding / DNA ligase (ATP); ATP dependent DNA ligase family protein, contains Pfam profile: PF01068 ATP dependent DNA ligase domain

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase (RH25) (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainATP binding / ATP-dependent helicase/ DNA helicase/ helicase/ nucleic acid binding; DNA helicase, putative, strong similarity to DNA Helicase recQl4B (Arabidopsis thaliana) GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00570: HRDC domainATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)unknown protein; similar to UMUC-like DNA repair family protein [Arabidopsis thaliana] (TAIR:At5g44740.2); similar to putative DNA-directed polymerase, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81654.1); contains InterPro domain UMUC-like DNA-repair protein (InterPro:IPR001126)ATP binding / DNA ligase (ATP); ATP dependent DNA ligase family protein, contains Pfam profile: PF01068 ATP dependent DNA ligase domainhydrolase; endonuclease/exonuclease/phosphatase family protein, contains similarity to nocturnin (Homo sapiens) GI:9885288; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase familyhydrolase; similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:At1g31530.1); similar to SPCC31H12.08c [Schizosaccharomyces pombe] (GB:CAA21225.1); contains InterPro domain Endonuclease/exonuclease/phosphatase family (InterPro:IPR005135)

unknown protein; DNA cross-link repair protein-related, contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 (Saccharomyces cerevisiae)

EMB1968; ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 37 kDa, putative, Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) (Homo sapiens); contains Pfam domain, PF00004: ATPase, AAA familyATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;unknown protein; DNA cross-link repair protein-related, contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 (Saccharomyces cerevisiae)

damaged DNA binding; DNA repair protein RAD23, putative, similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from (Daucus carota)DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasenucleoside-triphosphatase/ nucleotide binding; DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049nucleoside-triphosphatase/ nucleotide binding; DNA polymerase-related, weak similarity to DNA polymerase III holoenzyme tau subunit (Thermus thermophilus) GI:2583049DNA-3-methyladenine glycosylase I/ catalytic; methyladenine glycosylase family protein, Contains Pfam profile PF03352: Methyladenine glycosylase

ATSGS1; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DNA helicase (RECQl4A), nearly identical to DNA Helicase (Arabidopsis thaliana) GI:11121449DNA binding / DNA-directed DNA polymerase/ beta DNA polymerase/ lambda DNA polymerase; DNA polymerase lambda (POLL), identical to DNA polymerase lambda GI:12053869 from (Arabidopsis thaliana)ATP binding / DNA ligase (ATP); DNA ligase / polydeoxyribonucleotide synthase (ATP), identical to SP|Q42572 DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase (ATP)) {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminus


Gene NameAt1g09420 G6PD4; glucose-6-phosphate 1-dehydrogenase; EncodesAt1g24280 G6PD3; glucose-6-phosphate 1-dehydrogenase; EncodeAt1g63290 ribulose-phosphate 3-epimerase; ribulose-phosphate At1g64190 phosphogluconate dehydrogenase (decarboxylating)At1g71100 ribose-5-phosphate isomerase; ribose 5-phosphate iAt2g01290 ribose-5-phosphate isomerase; expressed proteinAt3g01850 ribulose-phosphate 3-epimerase; ribulose-phosphate At3g02360 phosphogluconate dehydrogenase (decarboxylating)At3g27300 G6PD5; glucose-6-phosphaACG9At5g13110 G6PD2; glucose-6-phosphate 1-dehydrogenase; EncodeAt5g13420 transaldolase; transaldolase, putative, similar toAt5g14260 unknown protein; SET domain-containing protein, lowAt5g35790 G6PD1; glucose-6-phosphate 1-dehydrogenase; EncodeAt5g40760 G6PD6; glucose-6-phosphate 1-dehydrogenase; EncodAt5g41670 phosphogluconate dehydrogenase (decarboxylating)At5g61410 RPE; ribulose-phosphate RPE

copper ion binding / electron transporter; uclacyanin, putative, similar to uclacyanin 3 GI:3395770 from (Arabidopsis thaliana); co

unknown protein; expressed protein, cytochrome c oxidase subunit 5c - Oryza sativa, EMBL:AB027123

ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase complex 14 kDa protein, putative, similar to SP|P48502 Ub

ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48,FMN binding / NADH dehydrogenase (ubiquinone)/ iron ion binding; NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrialoxidoreductase/ ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative oxidoreductase/ ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative electron transporter/ thiol-disulfide exchange intermediate; glutaredoxin family protein, contains INTERPRO Domain IPR002109, GluNADH dehydrogenase (ubiquinone); NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein, contains Pfam profubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase complex 14 kDa protein, putative, similar to SP|P48502 UbEMB1467; NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron transporter/ iron ion binding / oxidoreductase; NADHelectron transporter; electron transfer flavoprotein beta subunit family protein, contains Pfam profile: PF01012 electron transfer flNADH dehydrogenase (ubiquinone)/ electron transporter/ iron ion binding; NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochonelectron carrier/ electron transporter; cytochrome c, putative, similar to cytochrome c (Pumpkin, Winter squash) SWISS-PROT:P00

cytochrome-c oxidase; cytochrome c oxidase subunit Vc family protein / COX5C family protein, contains Pfam profile: PF05799 cy

unknown protein; expressed protein, cytochrome c oxidase subunit 5c - Oryza sativa, EMBL:AB027123

ubiquinol-cytochrome-c reductase; ubiquinol-cytochrome C reductase complex 14 kDa protein, putative, similar to SP|P48502 UbATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48,FMN binding / NADH dehydrogenase (ubiquinone)/ iron ion binding; NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrialelectron transporter; electron transfer flavoprotein beta subunit family protein, contains Pfam profile: PF01012 electron transfer fl

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase

Pentose phosphate pathway DESCRIPTION FROM

ATENSEMBL

ATP binding / damaged DNA binding; DNA mismatch repair MutS family protein, low similarity to SP|Q56239 DNA mismatch repair protein mutS {Thermus aquaticus; contains Pfam profile PF00488: MutS domain V

ATP binding / ATP-dependent peptidase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase; DNA repair protein-related, similar to RadA (Pseudomonas aeruginosa) GI:1881700


EMB1138; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:At3g22330.1); similar to ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare] (GB:BAD21122.1); contains InterPro domain Z

damaged DNA binding; DNA repair protein Rad4 family, low similarity to SP|Q01831 DNA-repair protein complementing XP-C cells (Xeroderma pigmentosum group C complementing protein) {Homo sapiens}; contains Pfam profile PF03835: DNA repair protein Rad4

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.2); similar to DEAD box RNA helicase (DRH1) [Arabidopsis thaliana] (TAIR:At3g01540.1); similar to DEAD box RNA helicase (DRH1) [Ar

ATP binding; structural maintenance of chromosomes (SMC) family protein, similar to SMC-like protein (MIM) (Arabidopsis thaliana) GI:5880614; contains Pfam profile PF02463: RecF/RecN/SMC N terminal domain

ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding; cell division cycle protein 48, putative / CDC48, putative, very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA fa

nuclease; similar to apurinic endonuclease-redox protein / DNA-(apurinic or apyrimidinic site) lyase [Arabidopsis thaliana] (TAIR:At2g41460.1); similar to Hypothetical protein MGC55889 [Danio rerio] (GB:AAH44527.1); contains InterPro domain Endonuclease/exonuclease/phosphatase fam

ATP binding; DNA mismatch repair family protein, similar to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch repai

ATP binding / ATP-dependent helicase/ DNA binding / chromatin binding / helicase/ nucleic acid binding / transcription regulator; chromatin remodeling factor, putative, strong similarity to chromatin remodeling factor CHD3 (PICKLE) (Arabidopsis thaliana) GI:6478518; contains Pfam pr

endonuclease/ nuclease/ nucleic acid binding; similar to repair endonuclease family protein [Arabidopsis thaliana] (TAIR:At5g39770.1); similar to unnamed protein product [Debaryomyces hansenii CBS767] (GB:CAG90230.1); contains InterPro domain ERCC4 domain (InterPro:IPR006166)

unknown protein; adenine-DNA glycosylase-related / MYH-related, similar to MYH (GI:18845094) (Rattus norvegicus); similar to adenine-DNA glycosylase (GI:12656850) (Mus musculus); contains TIGRFAM profile TIGR01084: A/G-specific adenine glycosylase (hits below the trusted cutoff)

ATP binding; DNA mismatch repair protein, putative, similar to SP|P54278 PMS1 protein homolog 2 (DNA mismatch repair protein PMS2) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch rehydrolase; endonuclease/exonuclease/phosphatase family protein, similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/pATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 (Homo sapiens) GI:3523150; contains Pfam profiles PF00270: DEAD

unknown protein; HhH-GPD base excision DNA repair family protein, contains weak similarity to DNA-3-methyladenine glycosylase 1 (EC 3.2.2.21) (3-methyladenine DNA glycosidase 1) (3MEA DNA glycosylase 1) (Swiss-Prot:Q92383) (Schizosaccharomyces pombe); contains Pfam profile

hydrolase/ nuclease; endonuclease/exonuclease/phosphatase family protein, similar to SP|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum}; contains Pfam profile PF03372: Endonuc

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicases GI:3775995, GI:3775987 from (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative (RH9), similar to RNA helicases GI:3775995, GI:3775987 (Arabidopsis thaliana); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal do

ATP binding / damaged DNA binding; similar to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis thaliana] (TAIR:At4g25540.1); similar to hypothetical protein [Neurospora crassa] (GB:XP_332076.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal (InterProATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein RAD54, putative, similar to RAD54 GB:CAA71278 from (Drosophila melanogaster) (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from (Homo sapiens), contains Pfam profile: PF00270 DEAD/DEAH box helicase

unknown protein; similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.2); similar to caldesmon-related [Arabidopsis thaliana] (TAIR:At1g52410.1); similar to hypothetical protein FG09227.1 [Gibberella zeae PH-1] (GB:EAA76462.1)


ATP binding / nucleoside-triphosphatase/ nucleotide binding; sporulation protein-related, similar to hypothetical proteins: GB:P51281 (Chloroplast Porphyra purpurea), GB:BAA16982 (Synechocystis sp), GB:P49540 (Odontella sinensis), GB:AAB82669 (Chloroplast Cyanidium caldarium); similar

endonuclease/ iron ion binding; HhH-GPD base excision DNA repair family protein, similar to DEMETER protein (Arabidopsis thaliana) GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair proteinATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase GB:A57514 GI:897915 from (Rattus norvegicus); contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainmRNA guanylyltransferase/ phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase; mRNA capping enzyme family protein, similar to mRNA capping enzyme (Xenopus laevis) GI:7239232; contains Pfam profiles PF01331: mRNA capping enzyme catalytic domain, PF007

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase DRH1 (Arabidopsis thaliana) GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF0039


ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / transcription factor; DEAD/DEAH box helicase, putative, similar to C-terminal half of transcription-repair coupling factor (TRCF) GB:Q55750 (Synechocystis PCC6803); contains Pfam profile: helicases conserved C-termi

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD/DEAH box helicase, putative, similar to RNA helicase (Rattus norvegicus) GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conser

ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase RH25 (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain

ATP binding / ATP-dependent helicase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; DNA-binding protein, putative, similar to Swiss-Prot:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein)(RIPE3B-binding complex 3B2 P110 subunit) (RIP-1)(Mesocricetus auratus); identical to putative helicase (atpc-2 gene) cDNA NCBI_gi:11191230

DNA-3-methyladenine glycosylase I; methyladenine glycosylase family protein, similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylasetranscription coactivator; DNA repair protein, putative (XRCC1), identical to putative DNA repair protein XRCC1 (Arabidopsis thaliana) GI:11181954; contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domainATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).; contains similarity to helicase-like protein NHL GI:6969265 from (Homo sapiens)ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to CHL1 potential helicase protein (GI:2632247) (Homo sapiens); similar to helicase GB:AAB06962 (Homo sapiens)

ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 36 kDA, putative, similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) (Homo sapiens)


ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; DEAD box RNA helicase, putative, similar to RNA helicase (RH25) (Arabidopsis thaliana) GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domainATP binding / ATP-dependent helicase/ DNA helicase/ helicase/ nucleic acid binding; DNA helicase, putative, strong similarity to DNA Helicase recQl4B (Arabidopsis thaliana) GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00570: HRDC domainATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)unknown protein; similar to UMUC-like DNA repair family protein [Arabidopsis thaliana] (TAIR:At5g44740.2); similar to putative DNA-directed polymerase, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81654.1); contains InterPro domain UMUC-like DNA-repair protein (InterPro:IPR001126)

hydrolase; similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:At1g31530.1); similar to SPCC31H12.08c [Schizosaccharomyces pombe] (GB:CAA21225.1); contains InterPro domain Endonuclease/exonuclease/phosphatase family (InterPro:IPR005135)

EMB1968; ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 37 kDa, putative, Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) (Homo sapiens); contains Pfam domain, PF00004: ATPase, AAA familyATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).;


ATP binding / DNA ligase (ATP); DNA ligase / polydeoxyribonucleotide synthase (ATP), identical to SP|Q42572 DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase (ATP)) {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminus


Gene NameAt1g04920 transferase, transferring glycosyl groups; sucrose-At1g06020 kinase/ ribokinase; pfkB-type carbohydrate kinase fAt1g06030 kinase/ ribokinase; pfkB-type carbohydrate kinase fAt1g06730 kinase; pfkB-type carbohydrate kinase family proteiAt1g08110 calmodulin binding / lactoylglutathione lyase; similAt1g12000 6-phosphofructokinase; pyrophosphate--fructose-6-pAt1g12240 ATBETAFRUCT4; beta-fructoBETAFRUCT4, BFRUCT4At1g12780 UDP-glucose 4-epimerase; Encodes a UDP-glucose epiAt1g12900 NAD binding / glyceraldehyde-3-phosphate dehydrogAt1g13440 NAD binding / glyceraldehyde-3-phosphate dehydrogAt1g16300 NAD binding / glyceraldehyde-3-phosphate dehydrogAt1g20950 6-phosphofructokinase; pyrophosphate--fructose-6-At1g22170 catalytic/ intramolecular transferase, phosphotranAt1g22650 beta-fructofuranosidase; beta-fructofuranosidase, putAt1g23190 intramolecular transferase, phosphotransferases /At1g32440 pyruvate kinase; pyruvate kinase, putative, similaAt1g35580 beta-fructofuranosidase; similar to beta-fructofuranoAt1g43670 fructose-bisphosphatase/ phosphoric ester hydrolaseAt1g47840 ATP binding / hexokinase; hexokinase, putative, simAt1g50390 unknown protein; fructokinase-related, similar to fAt1g50460 ATP binding / hexokinase; hexokinase, putative, simAt1g53310 ATPPC1 (PHOSPHOENOLPYRUATPPC1At1g55120 ATFRUCT5 (BETA-FRUCTOFURATFRUCT5At1g59900 AT-E1 ALPHA; oxidoreductaAT-E1At1g62660 hydrolase, hydrolyzing O-glycosyl compounds; beta-fAt1g63180 NAD binding / UDP-glucose 4-epimerase/ catalytic; UAt1g64440 RHD1 (ROOT HAIR DEFECTIVEREB1, RHD1At1g66430 kinase/ ribokinase; pfkB-type carbohydrate kinase fAt1g68750 ATPPC4; phosphoenolpyruvATPPC4, PPC4At1g69200 kinase; pfkB-type carbohydrate kinase family proteiAt1g70730 intramolecular transferase, phosphotransferases /At1g70820 intramolecular transferase, phosphotransferases; At1g72000 beta-fructofuranosidase; beta-fructofuranosidase, putAt1g73370 UDP-glycosyltransferase/ sucrose synthase; sucrose At1g74030 phosphopyruvate hydratase; enolase, putative, simiAt1g76550 6-phosphofructokinase; pyrophosphate--fructose-6-pAt1g78050 catalytic/ intramolecular transferase, phosphotranAt1g79530 NAD binding / glyceraldehyde-3-phosphate dehydrogAt1g79550 PGK (PHOSPHOGLYCERATE KPGKAt2g19860 ATHXK2 (HEXOKINASE 2); ATATHXK2, HXK2At2g22480 6-phosphofructokinase; phosphofructokinase family At2g29560 phosphopyruvate hydratase; enolase, putative, simAt2g31390 kinase/ ribokinase; pfkB-t STHAt2g36190 hydrolase, hydrolyzing O-gATFRUCT6At2g36460 fructose-bisphosphate aldolase; fructose-bisphosphatAt2g36530 LOS2; phosphopyruvate hydLOS2, ENOAt2g36580 pyruvate kinase; pyruvate kinase, putative, similaAt2g42600 ATPPC2 (PHOSPHOENOLPYRUATPPC2At2g45290 transketolase; transketolase, putative, strong simAt3g03250 UGP; UTP-glucose-1-phosphate uridylyltransferase/

Glycolysis and gluconeogenesis DESCRIPTION FROM

ATENSEMBL

At3g04050 pyruvate kinase; pyruvate kinase, putative, similaAt3g04120 GAPC (GLYCERALDEHYDE-3-GAPCAt3g05820 beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profiAt3g06500 beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profiAt3g07690 glycerol-3-phosphate dehydrogenase (NAD+); similar to NAD-dependent glycerol-3-phosphate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:At2g41540.1); similar to NAD-dependent glycerol-3-phosAt3g10370 glycerol-3-phosphate dehydrogenase; mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuAt3g12780 PGK1 (PHOSPHOGLYCERATE KPGK1At3g13784 hydrolase, hydrolyzing O-glycosyl compounds; beta-fructosidase, putative / beta-fructofuranosidase, putative / cell wall invertase, putative, similar to beta-fructofuranosidase GI:402740 from (Arabidopsis thaliaAt3g13790 hydrolase, hydrolyzing O-gBFRUCT1At3g14940 ATPPC3 (PHOSPHOENOLPYRUVATPPC3, PEPC, PPC1At3g19480 amino acid binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, simiAt3g20040 ATP binding / hexokinase; similar to hexokinase, putative [Arabidopsis thaliana] (TAIR:At1g50460.1); similar to putative hexokinase [Oryza sativa (japonica cultivar-group)] (GB:XP_463697.1); contains InterPrAt3g21720 catalytic/ isocitrate lyase; isocitrate lyase, putative, similar to isocitrate lyase GI:167144 from (Brassica napus)At3g22960 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase isozyme A, chloroplast precursor (Ricinus communis) SWISS-PROT:Q43117At3g25960 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954At3g27570 unknown protein; expressed proteinAt3g43190 UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to SP|P49040 Sucrose synthase (At3g49160 pyruvate kinase; pyruvate kinase family protein, similar to SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40) (Cytosolic thyroid hormone binding protein) (CTHBP) {Xenopus laevis}; contains Pfam profAt3g50520 catalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP|P00950 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Saccharomyces cerevisiae}; contains Pfam profile PF00300: phosphoglyAt3g52930 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to SP|O65735|ALF_CICAR Fructose-bisphosphate aldolase, cytoplasmic isozyme {Cicer arietinum}, cytosolic aldolase (FragariaAt3g52990 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806At3g54090 kinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinaseAt3g54690 sugar binding; sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein, similar to SP|Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli}; contains Pfam profiAt3g55440 ATCTIMC (CYTOSOLIC TRIOSATCTIMCAt3g55650 pyruvate kinase; pyruvate kinase, putative, simlar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954At3g55810 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954At3g59480 kinase/ ribokinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinaseAt3g60750 transketolase; transketolase, putative, strong similarity to transketolase 1 (Capsicum annuum) GI:3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, At4g02280 UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to sucrose synthase GI:6682841 fAt4g04040 6-phosphofructokinase; pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP|Q41141 PAt4g09510 beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profiAt4g10260 kinase/ ribokinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinaseAt4g10750 unknown protein; HpcH/HpaI aldolase family protein, similar to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase (Sphingopyxis macrogoltabida) GI:23330203; contains Pfam profile PF03328: HpcH/HpaI aldolaseAt4g10960 NAD binding / UDP-glucose 4-epimerase/ catalytic; UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, similar to UDP-galactose 4-epimerase from ArabidAt4g15530 ATP binding / kinase/ tra DL3805C, PPDK1At4g17260 L-lactate dehydrogenase/ DL4665WAt4g24620 PGI1 (CHLOROPLASTIC PHOSPPGI1At4g26270 6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: PhosphofructokinaseAt4g26390 pyruvate kinase; pyruvate kinase, putative, identical to probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (Arabidopsis thaliana) SWISS-PROT:O65595At4g26520 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, cytoplasmic, identical to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}At4g26530 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, strong similarity to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}At4g29130 ATHXK1 (GLUCOSE INSENSITATHXK1At4g29220 6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: PhosphofructokinaseAt4g32840 6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: PhosphofructokinaseAt4g34200 amino acid binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, siAt4g34240 ALDH3I1; aldehyde dehydALDH3At4g34860 beta-fructofuranosidase; similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:At4g09510.1); similar to beta-fructofuAt4g37840 ATP binding / hexokinase; hexokinase, putative, similar to hexokinase 1 (Spinacia oleracea) Swiss-Prot:Q9SEK3At4g37870 ATP binding / GTP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putatAt4g38970 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) (GI:4827251), Oryza At5g03690 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to PIR|S65073 fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic (Oryza sativa); contains Pfam profile PF0At5g03860 malate synthase; malate synthase, putative, strong similarity to glyoxysomal malate synthase from Brassica napus (SP|P13244)At5g04120 catalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, low similarity to SP|P36623 Phosphoglycerate mutase (EC 5.4.2.1) {Schizosaccharomyces pombe}; contains Pfam profile PF00300: pho

At5g08570 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806At5g11920 hydrolase, hydrolyzing O-glycosyl compounds; glycosyl hydrolase family 32 protein, similar to fructan 1-exohydrolase IIa GI:13940209 from (Cichorium intybus); contains Pfam profile PF00251: Glycosyl hydrolaAt5g17310 UTP-glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase; UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative, strong similarityAt5g17530 intramolecular transferase, phosphotransferases; phosphoglucosamine mutase family protein, low similarity to phosphoglucomutase/phosphomannomutase (Sphingomonas paucimobilis) GI:6103619; containsAt5g20830 SUS1 (SUCROSE SYNTHASE 1SUS1At5g22510 beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profiAt5g22620 catalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, weak similarity to SP|P15259 Phosphoglycerate mutase, muscle form (EC 5.4.2.1 {Homo sapiens}; contains Pfam profile PF00300: phosAt5g37180 UDP-glycosyltransferase/ sucrose synthase; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, similar to sucrose synthase GI:6682841 from (Citrus unshiu)At5g40510 unknown protein; expressed proteinAt5g42740 glucose-6-phosphate isomePGICAt5g47810 6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: PhosphofructokinaseAt5g49190 SUS2 (SUCROSE SYNTHASE 2)SSA, SUS2At5g50850 pyruvate dehydrogenase (aPDH2At5g51820 PGM (PHOSPHOGLUCOMUTASE)PGM, PGMPAt5g51830 kinase/ ribokinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinaseAt5g52920 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase isozyme G, chloroplast precursor (Nicotiana tabacum) SWISS-PROT:Q40546At5g55900 unknown protein; sucrase-related, similar to sucrase (Solanum tuberosum) GI:1200257At5g56350 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954At5g56630 6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: PhosphofructokinaseAt5g61580 6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: PhosphofructokinaseAt5g63680 pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806At5g64620 C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydraAt5g65690 ATP binding / GTP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putatAt5g65750 oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / oxoglutarate dehydrogenase (succinyl-transferring); 2-oxoglutarate dehydrogenase E1 component, putative / oxogluta


ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to BRCA1-binding helicase-like protein BACH1 (GI:13661819) Homo sapiens).; contains similarity to helicase-like protein NHL GI:6969265 from (Homo sapiens)ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; helicase-related, similar to CHL1 potential helicase protein (GI:2632247) (Homo sapiens); similar to helicase GB:AAB06962 (Homo sapiens)

ATP binding / ATP-dependent helicase/ DNA helicase/ helicase/ nucleic acid binding; DNA helicase, putative, strong similarity to DNA Helicase recQl4B (Arabidopsis thaliana) GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00570: HRDC domainATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)unknown protein; similar to UMUC-like DNA repair family protein [Arabidopsis thaliana] (TAIR:At5g44740.2); similar to putative DNA-directed polymerase, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81654.1); contains InterPro domain UMUC-like DNA-repair protein (InterPro:IPR001126)

hydrolase; similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:At1g31530.1); similar to SPCC31H12.08c [Schizosaccharomyces pombe] (GB:CAA21225.1); contains InterPro domain Endonuclease/exonuclease/phosphatase family (InterPro:IPR005135)

EMB1968; ATP binding / ATPase/ DNA binding / nucleoside-triphosphatase/ nucleotide binding; replication factor C 37 kDa, putative, Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) (Homo sapiens); contains Pfam domain, PF00004: ATPase, AAA family

ATP binding / DNA ligase (ATP); DNA ligase / polydeoxyribonucleotide synthase (ATP), identical to SP|Q42572 DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase (ATP)) {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminus

ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding; DNA repair protein, putative, similar to SP|P79051 DNA repair protein rhp16 (RAD16 homolog) {Schizosaccharomyces pombe}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain

Krebs cycleGene Name

At1g01090 PDH-E1 ALPHA (PYRUVATE DPDH-E1At1g21400 3-methyl-2-oxobutanoate dehydrogenase (2-methylproAt1g24180 IAR4; oxidoreductase, act PDH1At1g32480 oxidoreductase; isocitrate/isopropylmalate dehydrogAt1g48030 dihydrolipoyl dehydrogenase; dihydrolipoamide dehyAt1g53240 malate dehydrogenase; malate dehydrogenase (NAD),At1g54340 ICDH (isocitrate dehydrog ICDHAt1g65930 isocitrate dehydrogenase (NADP+)/ oxidoreductase; At1g79750 malic enzyme/ oxidoreductase, acting on NADH or NAt2g05710 RNA binding / aconitate hydratase/ hydro-lyase/ ironAt2g13560 malic enzyme/ oxidoreductase, acting on NADH or NAt2g17130 IDH2 (ISOCITRATE DEHYDROIDH2At2g18450 SDH1-2; Nuclear encoded mSDH1-2At2g19900 malic enzyme/ oxidoreductase, acting on NADH or NAt2g22780 PMDH1; malate dehydrogenase/ oxidoreductase; malaAt2g34590 transketolase; transketol PDH2At2g42790 citrate (SI)-synthase/ transferase, transferring acyAt2g44350 ATCS; citrate (SI)-synthas ATCSAt2g47510 FUM1 (FUMARASE 1); catalFUM1At3g06650 ACLB-1; One of the two geACLB-1At3g13930 acyltransferase/ dihydrolipoyllysine-residue acetylAt3g15020 malate dehydrogenase/ oxidoreductase; malate dehyAt3g16950 LPD1 (LIPOAMIDE DEHYDROGLPD1At3g17240 LPD2 (LIPOAMIDE DEHYDROGLPD2At3g25860 LTA2 (PLASTID E2 SUBUNIT LTA2, PLE2At3g27380 SDH2-1; One of three isof SDH2-1At3g52200 LTA3; acyltransferase/ dihLTA3At3g55410 oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / oxoglutarate dehydrogenase (succinyl-trAt3g58740 citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer; citrate synthase, glyoxAt3g58750 citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer; citrate synthase, glyoxAt3g60100 citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer; citrate synthase, mitocAt4g00570 malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor; malate oxidoreductase, putative, similar toAt4g13430 hydro-lyase/ lyase; aconitase family protein / aconitate hydratase family protein, contains Pfam profile PF00330: Aconitase family At4g26910 acyltransferase/ dihydrolipoyllysine-residue succinyltransferase; 2-oxoacid dehydrogenase family protein, similar to SP|P36957At4g26970 RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase; aconitate hydratase, cytoplasmic, putative / citrate hydAt4g35260 IDH1 (ISOCITRATE DEHYDROIDH1At4g35830 RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase; aconitate hydratase, cytoplasmic / citrate hydro-lyase /At5g03290 isocitrate dehydrogenase (NAD+)/ oxidoreductase; isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative,At5g08300 catalytic/ succinate-CoA ligase (GDP-forming); succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-At5g09660 PMDH2; encodes a microbody NAD-dependent malate dehydrogenaseAt5g11670 malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor; malate oxidoreductase, putative, similar toAt5g14590 isocitrate dehydrogenase (NADP+)/ oxidoreductase; isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativAt5g23250 catalytic/ succinate-CoA ligase (GDP-forming); succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-At5g25880 ATP binding / malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor; malate oxidoreductase, putativAt5g40650 SDH2-2; One of three isof SDH2-2At5g43330 malate dehydrogenase/ oxidoreductase; malate dehydrogenase, cytosolic, putative, strong similarity to cytosolic malate dehyAt5g49460 ACLB-2; One of the two geACLB-2At5g50950 catalytic/ fumarate hydra FUM2At5g55070 acyltransferase/ dihydrolipoyllysine-residue succinyltransferase; 2-oxoacid dehydrogenase family protein, similar to SP|Q01205 At5g56720 malate dehydrogenase/ oxidoreductase; malate dehydrogenase, cytosolic, putative, similar to cytosolic malate dehydrogenase


At5g58330 malate dehydrogenase/ oxidoreductase; malate dehydrogenase (NADP), chloroplast, putative, strong similiarity to chloroplastAt5g66760 SDH1-1; One of two genes SDH1-1

beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profibeta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profiglycerol-3-phosphate dehydrogenase (NAD+); similar to NAD-dependent glycerol-3-phosphate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:At2g41540.1); similar to NAD-dependent glycerol-3-phosglycerol-3-phosphate dehydrogenase; mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shu

hydrolase, hydrolyzing O-glycosyl compounds; beta-fructosidase, putative / beta-fructofuranosidase, putative / cell wall invertase, putative, similar to beta-fructofuranosidase GI:402740 from (Arabidopsis thalia

amino acid binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, simiATP binding / hexokinase; similar to hexokinase, putative [Arabidopsis thaliana] (TAIR:At1g50460.1); similar to putative hexokinase [Oryza sativa (japonica cultivar-group)] (GB:XP_463697.1); contains InterPrcatalytic/ isocitrate lyase; isocitrate lyase, putative, similar to isocitrate lyase GI:167144 from (Brassica napus)pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase isozyme A, chloroplast precursor (Ricinus communis) SWISS-PROT:Q43117pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954

UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to SP|P49040 Sucrose synthase (pyruvate kinase; pyruvate kinase family protein, similar to SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40) (Cytosolic thyroid hormone binding protein) (CTHBP) {Xenopus laevis}; contains Pfam profcatalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP|P00950 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Saccharomyces cerevisiae}; contains Pfam profile PF00300: phosphoglyfructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to SP|O65735|ALF_CICAR Fructose-bisphosphate aldolase, cytoplasmic isozyme {Cicer arietinum}, cytosolic aldolase (Fragariapyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806kinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinasesugar binding; sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein, similar to SP|Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli}; contains Pfam profi

pyruvate kinase; pyruvate kinase, putative, simlar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954kinase/ ribokinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinasetransketolase; transketolase, putative, strong similarity to transketolase 1 (Capsicum annuum) GI:3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to sucrose synthase GI:6682841 f6-phosphofructokinase; pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP|Q41141 Pbeta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profikinase/ ribokinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinaseunknown protein; HpcH/HpaI aldolase family protein, similar to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase (Sphingopyxis macrogoltabida) GI:23330203; contains Pfam profile PF03328: HpcH/HpaI aldolaseNAD binding / UDP-glucose 4-epimerase/ catalytic; UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, similar to UDP-galactose 4-epimerase from Arabid

6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinasepyruvate kinase; pyruvate kinase, putative, identical to probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (Arabidopsis thaliana) SWISS-PROT:O65595fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, cytoplasmic, identical to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, strong similarity to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}

6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinaseamino acid binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, si

beta-fructofuranosidase; similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:At4g09510.1); similar to beta-fructofuATP binding / hexokinase; hexokinase, putative, similar to hexokinase 1 (Spinacia oleracea) Swiss-Prot:Q9SEK3ATP binding / GTP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putatfructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) (GI:4827251), Oryza fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to PIR|S65073 fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic (Oryza sativa); contains Pfam profile PF0malate synthase; malate synthase, putative, strong similarity to glyoxysomal malate synthase from Brassica napus (SP|P13244)catalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, low similarity to SP|P36623 Phosphoglycerate mutase (EC 5.4.2.1) {Schizosaccharomyces pombe}; contains Pfam profile PF00300: pho

pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806hydrolase, hydrolyzing O-glycosyl compounds; glycosyl hydrolase family 32 protein, similar to fructan 1-exohydrolase IIa GI:13940209 from (Cichorium intybus); contains Pfam profile PF00251: Glycosyl hydrolaUTP-glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase; UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative, strong similarityintramolecular transferase, phosphotransferases; phosphoglucosamine mutase family protein, low similarity to phosphoglucomutase/phosphomannomutase (Sphingomonas paucimobilis) GI:6103619; contains

beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam proficatalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, weak similarity to SP|P15259 Phosphoglycerate mutase, muscle form (EC 5.4.2.1 {Homo sapiens}; contains Pfam profile PF00300: phosUDP-glycosyltransferase/ sucrose synthase; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, similar to sucrose synthase GI:6682841 from (Citrus unshiu)

6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase

kinase/ ribokinase; pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinasepyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase isozyme G, chloroplast precursor (Nicotiana tabacum) SWISS-PROT:Q40546unknown protein; sucrase-related, similar to sucrase (Solanum tuberosum) GI:1200257pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q429546-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinasepyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Glycine max) SWISS-PROT:Q42806C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydraATP binding / GTP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putatoxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / oxoglutarate dehydrogenase (succinyl-transferring); 2-oxoglutarate dehydrogenase E1 component, putative / oxogluta


ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)

Beta oxidationGene Name

At4g39850 PXA1 (PEROXISOMAL ABC TRACTS, COMATOSE, PED3, PAt3g05970 LACS6 (LONG-CHAIN ACYL-COA SYNTHETASE 6); catalyAt5g27600 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); catalyAt4g05160 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; EncAt5g63380 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; EncAt4g16760 ACX1 (ACYL-COA OXIDASE 1)ACX1At5g65110 ACX2 (ACYL-COA OXIDASE 2)ACX2At1g06290 ACX3 (ACYL-COA OXIDASE 3)ACX3At3g51840 ACX4 (ACYL-COA OXIDASE 4)ACX4, ATG6At4g29010 AIM1 (ABNORMAL INFLORESCEAIM, AIM1At3g06860 MFP2 (MULTIFUNCTIONAL PROMFP2At2g33150 PED1 (PEROXISOME DEFECTIVPED1At5g48880 PKT2 (PEROXISOMAL 3-KETOPKT1, PKT2At1g04710 acetyl-CoA C-acyltransferase; acetyl-CoA C-acyltransAt3g58740 citrate (SI)-synthase/ transferase, transferring acyAt3g58750 citrate (SI)-synthase/ transferase, transferring acyAt2g42790 citrate (SI)-synthase/ transferase, transferring acyAt5g43280 catalytic/ enoyl-CoA hydratase; enoyl-CoA hydratasAt5g65940 CHY1 (BETA-HYDROXYISOBUCHY1At5g03860 malate synthase; malate synthase, putative, strongAt3g21720 catalytic/ isocitrate lyase; isocitrate lyase, putativAt1g49430 LACS2 (LONG-CHAIN ACYL-COLACS2At4g23850 catalytic; long-chain-fatt LACS4At2g04350 catalytic/ long-chain-fat LACS8At1g01710 acyl-CoA thioesterase/ cyclic nucleotide binding; ac

oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / oxoglutarate dehydrogenase (succinyl-trcitrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer; citrate synthase, glyoxcitrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer; citrate synthase, glyoxcitrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer; citrate synthase, mitocmalic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor; malate oxidoreductase, putative, similar tohydro-lyase/ lyase; aconitase family protein / aconitate hydratase family protein, contains Pfam profile PF00330: Aconitase family acyltransferase/ dihydrolipoyllysine-residue succinyltransferase; 2-oxoacid dehydrogenase family protein, similar to SP|P36957RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase; aconitate hydratase, cytoplasmic, putative / citrate hyd

RNA binding / aconitate hydratase/ hydro-lyase/ iron ion binding / lyase; aconitate hydratase, cytoplasmic / citrate hydro-lyase /isocitrate dehydrogenase (NAD+)/ oxidoreductase; isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative,catalytic/ succinate-CoA ligase (GDP-forming); succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-PMDH2; encodes a microbody NAD-dependent malate dehydrogenasemalic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor; malate oxidoreductase, putative, similar toisocitrate dehydrogenase (NADP+)/ oxidoreductase; isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativcatalytic/ succinate-CoA ligase (GDP-forming); succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-ATP binding / malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor; malate oxidoreductase, putativ

malate dehydrogenase/ oxidoreductase; malate dehydrogenase, cytosolic, putative, strong similarity to cytosolic malate dehy

acyltransferase/ dihydrolipoyllysine-residue succinyltransferase; 2-oxoacid dehydrogenase family protein, similar to SP|Q01205 malate dehydrogenase/ oxidoreductase; malate dehydrogenase, cytosolic, putative, similar to cytosolic malate dehydrogenase


malate dehydrogenase/ oxidoreductase; malate dehydrogenase (NADP), chloroplast, putative, strong similiarity to chloroplast

beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profibeta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profiglycerol-3-phosphate dehydrogenase (NAD+); similar to NAD-dependent glycerol-3-phosphate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:At2g41540.1); similar to NAD-dependent glycerol-3-phosglycerol-3-phosphate dehydrogenase; mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shu

hydrolase, hydrolyzing O-glycosyl compounds; beta-fructosidase, putative / beta-fructofuranosidase, putative / cell wall invertase, putative, similar to beta-fructofuranosidase GI:402740 from (Arabidopsis thalia

amino acid binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, simiATP binding / hexokinase; similar to hexokinase, putative [Arabidopsis thaliana] (TAIR:At1g50460.1); similar to putative hexokinase [Oryza sativa (japonica cultivar-group)] (GB:XP_463697.1); contains InterPr

pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase isozyme A, chloroplast precursor (Ricinus communis) SWISS-PROT:Q43117pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954

UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to SP|P49040 Sucrose synthase (pyruvate kinase; pyruvate kinase family protein, similar to SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40) (Cytosolic thyroid hormone binding protein) (CTHBP) {Xenopus laevis}; contains Pfam profcatalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, similar to SP|P00950 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Saccharomyces cerevisiae}; contains Pfam profile PF00300: phosphoglyfructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to SP|O65735|ALF_CICAR Fructose-bisphosphate aldolase, cytoplasmic isozyme {Cicer arietinum}, cytosolic aldolase (Fragaria

sugar binding; sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein, similar to SP|Q47334 Polysialic acid capsule expression protein kpsF {Escherichia coli}; contains Pfam profi

pyruvate kinase; pyruvate kinase, putative, simlar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q42954

transketolase; transketolase, putative, strong similarity to transketolase 1 (Capsicum annuum) GI:3559814; contains Pfam profiles PF02779: Transketolase, pyridine binding domain, PF02780: Transketolase, UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to sucrose synthase GI:6682841 f6-phosphofructokinase; pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative, strong similarity to SP|Q41141 Pbeta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam profi

unknown protein; HpcH/HpaI aldolase family protein, similar to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase (Sphingopyxis macrogoltabida) GI:23330203; contains Pfam profile PF03328: HpcH/HpaI aldolaseNAD binding / UDP-glucose 4-epimerase/ catalytic; UDP-glucose 4-epimerase, putative / UDP-galactose 4-epimerase, putative / Galactowaldenase, putative, similar to UDP-galactose 4-epimerase from Arabid

6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinasepyruvate kinase; pyruvate kinase, putative, identical to probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (Arabidopsis thaliana) SWISS-PROT:O65595fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, cytoplasmic, identical to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, strong similarity to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}

6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinaseamino acid binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative, si

beta-fructofuranosidase; similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:At4g09510.1); similar to beta-fructofu

ATP binding / GTP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putatfructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, strong similarity to plastidic fructose-bisphosphate aldolase (EC 4.1.2.13) from Nicotiana paniculata (NPALDP1) (GI:4827251), Oryza fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to PIR|S65073 fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic (Oryza sativa); contains Pfam profile PF0

catalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, low similarity to SP|P36623 Phosphoglycerate mutase (EC 5.4.2.1) {Schizosaccharomyces pombe}; contains Pfam profile PF00300: pho

hydrolase, hydrolyzing O-glycosyl compounds; glycosyl hydrolase family 32 protein, similar to fructan 1-exohydrolase IIa GI:13940209 from (Cichorium intybus); contains Pfam profile PF00251: Glycosyl hydrolaUTP-glucose-1-phosphate uridylyltransferase/ nucleotidyltransferase; UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative, strong similarityintramolecular transferase, phosphotransferases; phosphoglucosamine mutase family protein, low similarity to phosphoglucomutase/phosphomannomutase (Sphingomonas paucimobilis) GI:6103619; contains

beta-fructofuranosidase; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative, similar to neutral invertase (Daucus carota) GI:4200165; contains Pfam proficatalytic; phosphoglycerate/bisphosphoglycerate mutase family protein, weak similarity to SP|P15259 Phosphoglycerate mutase, muscle form (EC 5.4.2.1 {Homo sapiens}; contains Pfam profile PF00300: phosUDP-glycosyltransferase/ sucrose synthase; sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, similar to sucrose synthase GI:6682841 from (Citrus unshiu)

6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase

pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase isozyme G, chloroplast precursor (Nicotiana tabacum) SWISS-PROT:Q40546

pyruvate kinase; pyruvate kinase, putative, similar to pyruvate kinase, cytosolic isozyme (Nicotiana tabacum) SWISS-PROT:Q429546-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase6-phosphofructokinase; phosphofructokinase family protein, similar to phosphofructokinase (Amycolatopsis methanolica) GI:17432243; contains Pfam profile PF00365: Phosphofructokinase

C/VIF2 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydraATP binding / GTP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase; phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putatoxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / oxoglutarate dehydrogenase (succinyl-transferring); 2-oxoglutarate dehydrogenase E1 component, putative / oxogluta

ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding; SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein, similar to transcription factor RUSH-1alpha (Oryctolagus cuniculus) GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger)

StressGene Name

At1g01390 UDP-glycosyltransferase/ transferase, transferring At1g01420 UDP-glycosyltransferase/ transferase, transferring At1g02050 acyltransferase; chalcone and stilbene synthase faAt1g02920 ATGSTF7 (GLUTATHIONE S-TRGST11At1g02930 ATGSTF6; glutathione tranATGST1, ERD11At1g02950 ATGSTF4 (GLUTATHIONE S-TRGST31At1g04150 unknown protein; C2 domain-containing protein, cAt1g19540 unknown protein; isoflavone reductase, putative, sAt1g22610 unknown protein; C2 domain-containing protein, cAt1g24110 peroxidase; peroxidase, p PER6At1g51570 unknown protein; C2 domain-containing protein, cAt1g66540 heme binding / iron ion binding / monooxygenase/ oAt1g74720 unknown protein; C2 domain-containing protein, cAt1g75280 unknown protein; isoflavone reductase, putative, ideAt1g75290 unknown protein; isoflavone reductase, putative, siAt1g75300 unknown protein; isoflavone reductase, putative, idAt2g02930 ATGSTF3 (GLUTATHIONE S-TRGST16At2g21730 oxidoreductase/ zinc ion binding; mannitol dehydroAt2g21890 oxidoreductase/ zinc ion CAD3At2g23190 CYP81D7; heme binding / CYP81D7At2g23220 CYP81D6; heme binding / CYP81D6At2g23230 lyase; terpene synthase/cyclase family proteinAt2g23910 cinnamoyl-CoA reductase; cinnamoyl-CoA reductase-At2g37040 PAL1; phenylalanine ammonPAL1At2g39980 transferase; transferase family protein, contains PfAt2g47730 ATGSTF8 (GLUTATHIONE S-TRGST6At3g10340 ammonia ligase/ ammonia-lyase; phenylalanine ammoAt3g28740 heme binding / iron ion binding / monooxygenase/ oAt3g48990 AMP binding / catalytic; AMPBP3At3g49620 DIN11 (DARK INDUCIBLE 11);DIN11At3g49630 iron ion binding / isopenicillin-N synthase/ oxidoreAt3g50210 iron ion binding / isopenicillin-N synthase/ oxidoreAt3g53140 O-methyltransferase; O-diphenol-O-methyl transferaAt3g53260 PAL2; phenylalanine ammoPAL2At4g00040 acyltransferase; chalcone and stilbene synthase famiAt4g01070 UDP-glucosyltransferase/ UDP-glycosyltransferase/ trAt4g02520 ATGSTF2; glutathione tranATPM24At4g05160 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; EncAt4g08790 hydrolase, acting on carbon-nitrogen (but not peptideAt4g15870 ATTS1; lyase; encodes a pATTS1, TS1At4g16330 oxidoreductase, acting onDL4195CAt4g17690 peroxidase; peroxidase, p DL4880W, PER41At4g19010 4-coumarate-CoA ligase; 4-coumarate--CoA ligase faAt4g20080 unknown protein; C2 domain-containing protein, cAt4g22880 LDOX (TANNIN DEFICIENT SELDOXAt4g24520 ATR1 (ARABIDOPSIS CYTOCHATR1At4g30470 cinnamoyl-CoA reductase; cinnamoyl-CoA reductase-At4g33360 unknown protein; terpene cyclase/mutase-related, At4g34850 acyltransferase; chalcone and stilbene synthase famiAt4g35420 unknown protein; dihydroflavonol 4-reductase family


At4g36220 FAH1 (FERULATE-5-HYDROXYLCYP84A1, FAH1At4g36380 ROT3 (ROTUNDIFOLIA 3); oxyCYP90C1, ROT3At4g36770 UDP-glycosyltransferase/ transferase, transferring At4g37330 CYP81D4; heme binding / CYP81D4At4g37340 CYP81D3; heme binding / CYP81D3At4g39230 unknown protein; isoflavone reductase, putative, simAt4g39330 oxidoreductase/ zinc ion binding; similar to mannitAt5g01210 transferase; transferase family protein, contains PfAt5g04230 PAL3 (PHENYL ALANINE AMMPAL3At5g04330 heme binding / iron ion binding / monooxygenase/ oAt5g06850 unknown protein; C2 domain-containing protein, cAt5g08640 FLS (FLAVONOL SYNTHASE)FLS, FLS1At5g12970 unknown protein; C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domainAt5g13930 CHS (CHALCONE SYNTHASE); CHSAt5g36220 CYP81D1 (CYTOCHROME P45CYP81D1, CYP91A1At5g47000 peroxidase; peroxidase, p PER65At5g48060 unknown protein; C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domainAt5g58490 cinnamoyl-CoA reductase; cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311)At5g64370 PYD3; beta-ureidopropionaPYD3At3g47450 ATNOS1; expressed proteinAt5g47910 RBOHD (RESPIRATORY BURSRBOHDAt1g64060 ATRBOH F F; NAD(P)H oxidATRBOH, RBOHAP108At1g20480 4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|Q9S725 from Arabidopsis thaliana and SP|P17814 from Oryza sativa; contains Pfam AMP-binding enzyme domain PF00501At1g20490 4-coumarate-CoA ligase; AMP-dependent synthetase and ligase family protein, similar to SP|Q42524 and SP|Q9S725; contains Pfam AMP-binding enzyme domain PF00501At1g20500 4-coumarate-CoA ligase; 4-coumarate--CoA ligase family / 4-coumaroyl-CoA synthase family, similar to SP|Q42524 and SP|Q9S725; contains Pfam AMP-binding enzyme domain PF00501At1g20510 4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|P14912 and SP|P14913 from Petroselinum crispum; contains Pfam AMP-binding enzyme domain PF00501At1g25460 oxidoreductase; oxidoreductase family protein, similar to dihydroflavonol 4-reductase GI:1332411 from (Rosa hybrida), cinnamoyl CoA reductase from Pinus taeda (gi:17978649), Eucalyptus gunnii (gi:2058311)At1g49390 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP|P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt1g51680 4CL1 (4-COUMARATE:COA LIG4CL1At1g53520 unknown protein; chalcone-flavanone isomerase-related, low similarity to GI:499036 (Vitis vinifera)At1g56650 PAP1 (PRODUCTION OF ANTHOMYB75, PAP1At1g61720 BAN (BANYULS); Negative rBANAt1g62940 4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to gi:112801 from Petroselinum crispum, GB:AAD40664 from (Solanum tuberosum) (J. Biol. Chem. 266 (13), 8551-8559 (1991)); contains Pfam AMP-binding enzyme domain PF00501At1g65060 4CL3; 4-coumarate-CoA liga4CL3At1g66390 PAP2 (PRODUCTION OF ANTHMYB90, PAP2At1g78550 iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (flavonone-3-hydroxylase) (SP|Q06942)(Malus domestica); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt2g18560 UDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile PF00201: UDP-glucoronosyl and UDP-glucosyl transferase; contains similarity to flavonol 3-o-glucosyltransferase 5 from (Manihot esculenta)At2g18570 transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt2g22930 transferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt2g29710 UDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt2g29730 UDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt2g29740 UDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt2g29750 UDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt2g38240 unknown protein; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Citrus unshiu)(gi:4126403), leucoanthocyanidin dioxygenase (Daucus carota)(gi:5924383); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt2g44800 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase SP|Q96330 {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyAt3g19000 iron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyAt3g19010 flavonol synthase/ iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains similarity to flavonol synthase (FLS) from (Solanum tuberosum) SP|Q41452, {Petunia hybrida} SP|Q07512; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyAt3g21230 catalytic; 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (4CL), similar to 4CL2 (gi:12229665) and 4CL1 (gi:12229649) from (Arabidopsis thaliana), 4CL1 (gi:12229631) from Nicotiana tabacumAt3g21240 4CL2; 4-coumarate-CoA lig4CL2At3g29630 transferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt3g51240 F3H (TRANSPARENT TESTA 6)F3H, TT6At3g55120 TT5 (TRANSPARENT TESTA 5)CFI, CHI, TT5At4g00730 ANL2 (ANTHOCYANINLESS 2)AHDP, ANL2

At4g09820 TT8 (TRANSPARENT TESTA 8TT8, BHLH042, BHLH42At4g10490 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (Dianthus caryophyllus)(SP|Q05964), hyoscyamine 6 beta-hydroxylase (Atropa belladonna)(gi:4996123); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt4g22870 unknown protein; leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative, similar to SP|P51091 (Malus domestica); contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamilyAt4g27250 cinnamyl-alcohol dehydrogenase; dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416At4g38620 MYB4; transcription factorMYB4At5g05270 unknown protein; chalcone-flavanone isomerase family protein, contains very low similarity to chalcone-flavonone isomerase (chalcone isomerase), GI:1705761 from Vitis vinifera; contains Pfam profile PF02431: Chalcone-flavanone isomeraseAt5g07990 TT7 (TRANSPARENT TESTA 7)CYP75B1, D501, TT7At5g24530 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavanone 3-hydroxylase (Persea americana)(GI:727410); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt5g35550 TT2 (TRANSPARENT TESTA 2)MYB123, TT2At5g38120 4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to 4CL2, Arabidopsis thaliana (gi:12229665), 4CL1, Nicotiana tabacum (gi:12229631); contains Pfam AMP-binding enzyme domain PF00501At5g42800 DFR (DIHYDROFLAVONOL 4-REDFR, DFRA, TT3At5g43935 flavonol synthase; flavonol synthase, putative, similar to flavonol synthase from Arabidopsis thaliana (SP|Q96330), Matthiola incana (SP|O04395); contains Pfam profile PF03171 2OG-Fe(II) oxygenase superfamilyAt5g54010 transferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt5g54060 transferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseAt5g63380 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.At5g63580 unknown protein; flavonol synthase, putative, similar to SP|Q96330; contains PF03171 2OG-Fe(II) oxygenase superfamilyAt5g63590 flavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1) {Arabidopsis thaliana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyAt5g63595 flavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS1) from Arabidopsis thalianaAt5g63600 unknown protein; flavonol synthase, putative, similar to SP|Q96330; contains Pfam profile PF03171: 2OG-Fe(II) oxygenase superfamilyAt5g66220 chalcone isomerase; chalcone-flavanone isomerase, putative / chalcone isomerase, putative (CHI), similar to SP|P41088At5g24520 TTG1 (TRANSPARENT TESTA GTTG1At5g23260 TT16 (TRANSPARENT TESTA16)TT16At2g37260 TTG2 (TRANSPARENT TESTA GTTG2, WRKY44At2g30490 ATC4H (CINNAMATE-4-HYDRATC4H, CYP73A5At5g04230 PAL3 (PHENYL ALANINE AMMPAL3At3g10340 ammonia ligase/ ammonia-lyase; phenylalanine ammonia-lyase, putative, similar to phenylalanine ammonia-lyase GB:S48726 (Petroselinum crispum)At3g53260 PAL2; phenylalanine ammoPAL2At2g37040 PAL1; phenylalanine ammonPAL1At4g13660 unknown protein; pinoresinol-lariciresinol reductase, putative, similar to pinoresinol-lariciresinol reductase TH1 (Tsuga heterophylla)(GI:7578915); contains isoflavone reductase domain PF02716At5g54160 ATOMT1 (O-METHYLTRANSFERAATOMT1, OMT1At4g25300 iron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), anthocyanidin synthase (Torenia fournieri)(GI:12583673); contains PF03171 2OG-Fe(II) oxygenase superfamily domainAt1g63650 EGL3 (ENHANCER OF GLABRA3ATMYC-2, BHLH002, BHLH2, EGL1, EGL3, MYC146

Gene NameAt1g03130 unknown protein; photosystPSAD2At1g14030 [ribulose-bisphosphate ca RBCMTAt1g32060 ATP binding / kinase/ phosphoribulokinase/ uridine kinase; phosphoribulokinase (PRK) / phosphopentokinase, nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}At1g42970 GAPB (GLYCERALDEHYDE-3-GAPBAt1g51420 catalytic/ sucrose-phosphatase; sucrose-phosphatase, putative, similar to sucrose-phosphatase (SPP1) (Arabidopsis thaliana) GI:11127757; contains Pfam profile PF05116: Sucrose-6F-phosphate phosphohydrolaseAt1g56190 phosphoglycerate kinase; phosphoglycerate kinase, putative, similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinaseAt1g67090 ribulose-bisphosphate car ATS1A, RBCS-1AAt2g01140 fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to plastidic aldolase NPALDP1 from Nicotiana paniculata (GI:4827251); contains Pfam profile PF00274 Fructose-bisphosphate aldolase class-IAt2g21170 TIM (TRIOSEPHOSPHATE ISOTIMAt2g21330 fructose-bisphosphate aldolase; similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:At4g38970.2); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741)At2g35840 catalytic/ sucrose-phosphatase; sucrose-phosphatase 1 (SPP1), identical to sucrose-phosphatase (SPP1) (Arabidopsis thaliana) GI:11127757At3g04790 ribose-5-phosphate isomerase; ribose 5-phosphate isomerase-related, similar to ribose-5-phosphate isomerase GI:18654317 from (Spinacia oleracea)At3g26650 GAPA (GLYCERALDEHYDE 3-PGAPAAt3g50820 PSBO-2/PSBO2; oxygen evolving; Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type.At3g51820 prenyltransferase; chlorophyll synthetase, putative, identical to gi:972938 putative chlorophyll synthetase from Arabidopsis thalianaAt3g52340 SPP2 (sucrose-phosphatasSPP2At3g54050 fructose-bisphosphatase/ FBPAt3g54270 catalytic/ sucrose-phosph SPP3At3g55330 calcium ion binding; photosystem II reaction center PsbP family protein, contains Pfam profile PF01789: PsbPAt3g55800 SBPASE; phosphoric ester hydrolase; Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.At3g61470 LHCA2; chlorophyll bindin LHCA2At4g02770 unknown protein; photosystPSAD1At4g05180 calcium ion binding; oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2), identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)At4g10120 transferase, transferring glycosyl groups; sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase, Zea mays, PIR2:JQ1329; contains non-consensus (GC) donor splice site at intron 4At4g12800 unknown protein; photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V, identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) (Arabidopsis thaliana); contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domainsAt4g14690 ELIP2 (EARLY LIGHT-INDUCIELIPAt4g15560 CLA1 (CLOROPLASTOS ALTERCLA1At4g21280 calcium ion binding; similar to oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) [Arabidopsis thaliana] (TAIR:At4g05180.1); similar to chloroplast oxygen-evolving enhancer protein [Manihot esculenta] (GB:AAV74404.1); contains InterPro domain Twin-arginine translocation pathway signal (InterPro:IPR006311); contains InterPro domain Oxygen evolving enhancer 3 (InterPro:IPR008797)At4g21300 unknown protein; pentatricopeptide (PPR) repeat-containing protein, contains INTERPRO:IPR002885 PPR repeatsAt4g27270 FMN binding / oxidoreductase; quinone reductase family protein, similar to 1,4-benzoquinone reductase (Phanerochaete chrysosporium)(GI:4454993); similar to Trp repressor binding protein (Escherichia coli)(SP|P30849); contains flavodoxin domain PF00258At4g28660 unknown protein; photosystem II reaction centre W (PsbW) family protein, contains Pfam profile: PF03912 photosystem II reaction centre W protein, PsbWAt4g32260 hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATP synthase family, contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140At4g37230 calcium ion binding; oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative, similar to Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (SP:P14226) {Pisum sativum}At5g02120 OHP (ONE HELIX PROTEIN); EOHPAt5g11110 unknown protein; similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At1g04920.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At5g20280.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At4g10120.1); similar to sucrose phosphate synthase [Lycopersicon esculentum] (GB:AAU29197.1); similar to sucrose-6-phosphate synthase [Nicotiana tabacum] (GB:AAF06792.1); similar to sucrose-phosphate synthase (EC 2.4.1.14) - spinach (GB:JQ2277); similar to sucrose-phosphate synthase [Solanum tuberosum] (GB:CAA51872.1); similar to sucrose phosphate synthase [Actinidia chinensis] (GB:AAL86360.1); contains InterPro domain Glycosyl transferase, group 1 (InterPro:IPR001296)At5g11450 unknown protein; oxygen-evolving complex-related, 23 kDa polypeptide of water-oxidizing complex of photosystem II, Nicotiana tabacum, EMBL:NT23WOP2BAt5g12860 oxoglutarate:malate antiporter; oxoglutarate/malate translocator, putative, similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364At5g20280 transferase, transferring glycosyl groups; sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase (EC 2.4.1.14) isoform 1 - Citrus unshiu, EMBL:AB005023At5g38410 ribulose-bisphosphate car ATS3B, RBCS-3BAt5g38420 ribulose-bisphosphate car ATS2B, RBCS-2BAt5g38430 ribulose-bisphosphate carboxylase; ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B), identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}At5g54500 FQR1 (FLAVODOXIN-LIKE QUFQR1At5g58800 FMN binding / oxidoreductase; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:At4g27270.1); similar to unknown [Prunus armeniaca] (GB:AAD38143.1); contains InterPro domain Flavodoxin/nitric oxide synthase (InterPro:IPR008254)At5g64380 phosphoric ester hydrolase; fructose-1,6-bisphosphatase family protein, similar to SP|P22418 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Spinacia oleracea}; contains Pfam profile PF00316: fructose-1,6-bisphosphataseAt5g66570 PSBO-1 (OXYGEN-EVOLVING EPSBOAt2g40100 LHCB4.3; chlorophyll bind LHCB4At2g20260 unknown protein; photosystPSAE2At3g08940 LHCB4.2; Lhcb4.2 protein LHCB4At3g47470 CAB4; chlorophyll binding;CAB4At3g54890 LHCA1; chlorophyll A-B binCAB6, LHCA1

Photosynthesis/chloroplast related DESCRIPTION FROM

ATENSEMBL

At4g10340 LHCB5 (LIGHT HARVESTING CLHCB5At4g28750 PSAE1 (PSA E1 KNOCKOUT); PSAE1At5g01530 chlorophyll binding; chlorophyll A-B binding protein CP29 (LHCB4), identical to CP29 (Arabidopsis thaliana) GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding proteinAt5g28450 chlorophyll binding; chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative, strong similarity to SP|P13869 Chlorophyll A-B binding protein, chloroplast precursor (LHCI type II CAB) {Petunia hybrida}; contains Pfam profile: PF00504 chlorophyll A-B binding proteinAt1g19150 LHCA2*1; chlorophyll bindiLHCA2*1At1g68590 structural constituent of ribosome; plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative, similar to SP|P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)At5g17870 unknown protein; plastid-specific ribosomal protein-related, contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from (Spinacia oleracea)AtCg00700 PSBN; PSII low MW proteinPSBNAtCg01060 PSAC; Encodes the PsaC suPSACAtCg00340 PSAB; Encodes the D1 subuPSABAtCg00490 RBCL; large subunit of RU RBCL

unknown protein; C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domain

unknown protein; C2 domain-containing protein, contains INTERPRO:IPR000008 C2 domaincinnamoyl-CoA reductase; cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311)

4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|Q9S725 from Arabidopsis thaliana and SP|P17814 from Oryza sativa; contains Pfam AMP-binding enzyme domain PF005014-coumarate-CoA ligase; AMP-dependent synthetase and ligase family protein, similar to SP|Q42524 and SP|Q9S725; contains Pfam AMP-binding enzyme domain PF005014-coumarate-CoA ligase; 4-coumarate--CoA ligase family / 4-coumaroyl-CoA synthase family, similar to SP|Q42524 and SP|Q9S725; contains Pfam AMP-binding enzyme domain PF005014-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|P14912 and SP|P14913 from Petroselinum crispum; contains Pfam AMP-binding enzyme domain PF00501oxidoreductase; oxidoreductase family protein, similar to dihydroflavonol 4-reductase GI:1332411 from (Rosa hybrida), cinnamoyl CoA reductase from Pinus taeda (gi:17978649), Eucalyptus gunnii (gi:2058311)oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP|P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

unknown protein; chalcone-flavanone isomerase-related, low similarity to GI:499036 (Vitis vinifera)

4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to gi:112801 from Petroselinum crispum, GB:AAD40664 from (Solanum tuberosum) (J. Biol. Chem. 266 (13), 8551-8559 (1991)); contains Pfam AMP-binding enzyme domain PF00501

iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (flavonone-3-hydroxylase) (SP|Q06942)(Malus domestica); contains PF03171 2OG-Fe(II) oxygenase superfamily domainUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile PF00201: UDP-glucoronosyl and UDP-glucosyl transferase; contains similarity to flavonol 3-o-glucosyltransferase 5 from (Manihot esculenta)transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferasetransferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseunknown protein; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Citrus unshiu)(gi:4126403), leucoanthocyanidin dioxygenase (Daucus carota)(gi:5924383); contains PF03171 2OG-Fe(II) oxygenase superfamily domainoxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase SP|Q96330 {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyiron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyflavonol synthase/ iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains similarity to flavonol synthase (FLS) from (Solanum tuberosum) SP|Q41452, {Petunia hybrida} SP|Q07512; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familycatalytic; 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (4CL), similar to 4CL2 (gi:12229665) and 4CL1 (gi:12229649) from (Arabidopsis thaliana), 4CL1 (gi:12229631) from Nicotiana tabacum

transferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (Dianthus caryophyllus)(SP|Q05964), hyoscyamine 6 beta-hydroxylase (Atropa belladonna)(gi:4996123); contains PF03171 2OG-Fe(II) oxygenase superfamily domainunknown protein; leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative, similar to SP|P51091 (Malus domestica); contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamilycinnamyl-alcohol dehydrogenase; dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416

unknown protein; chalcone-flavanone isomerase family protein, contains very low similarity to chalcone-flavonone isomerase (chalcone isomerase), GI:1705761 from Vitis vinifera; contains Pfam profile PF02431: Chalcone-flavanone isomerase

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavanone 3-hydroxylase (Persea americana)(GI:727410); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to 4CL2, Arabidopsis thaliana (gi:12229665), 4CL1, Nicotiana tabacum (gi:12229631); contains Pfam AMP-binding enzyme domain PF00501

flavonol synthase; flavonol synthase, putative, similar to flavonol synthase from Arabidopsis thaliana (SP|Q96330), Matthiola incana (SP|O04395); contains Pfam profile PF03171 2OG-Fe(II) oxygenase superfamilytransferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferasetransferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.unknown protein; flavonol synthase, putative, similar to SP|Q96330; contains PF03171 2OG-Fe(II) oxygenase superfamilyflavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1) {Arabidopsis thaliana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyflavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS1) from Arabidopsis thalianaunknown protein; flavonol synthase, putative, similar to SP|Q96330; contains Pfam profile PF03171: 2OG-Fe(II) oxygenase superfamilychalcone isomerase; chalcone-flavanone isomerase, putative / chalcone isomerase, putative (CHI), similar to SP|P41088

ammonia ligase/ ammonia-lyase; phenylalanine ammonia-lyase, putative, similar to phenylalanine ammonia-lyase GB:S48726 (Petroselinum crispum)

unknown protein; pinoresinol-lariciresinol reductase, putative, similar to pinoresinol-lariciresinol reductase TH1 (Tsuga heterophylla)(GI:7578915); contains isoflavone reductase domain PF02716

iron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), anthocyanidin synthase (Torenia fournieri)(GI:12583673); contains PF03171 2OG-Fe(II) oxygenase superfamily domainATMYC-2, BHLH002, BHLH2, EGL1, EGL3, MYC146

ATP binding / kinase/ phosphoribulokinase/ uridine kinase; phosphoribulokinase (PRK) / phosphopentokinase, nearly identical to SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}

catalytic/ sucrose-phosphatase; sucrose-phosphatase, putative, similar to sucrose-phosphatase (SPP1) (Arabidopsis thaliana) GI:11127757; contains Pfam profile PF05116: Sucrose-6F-phosphate phosphohydrolasephosphoglycerate kinase; phosphoglycerate kinase, putative, similar to SP|P41758 Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii}; contains Pfam profile PF00162: phosphoglycerate kinase

fructose-bisphosphate aldolase; fructose-bisphosphate aldolase, putative, similar to plastidic aldolase NPALDP1 from Nicotiana paniculata (GI:4827251); contains Pfam profile PF00274 Fructose-bisphosphate aldolase class-I

fructose-bisphosphate aldolase; similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:At4g38970.2); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741)catalytic/ sucrose-phosphatase; sucrose-phosphatase 1 (SPP1), identical to sucrose-phosphatase (SPP1) (Arabidopsis thaliana) GI:11127757ribose-5-phosphate isomerase; ribose 5-phosphate isomerase-related, similar to ribose-5-phosphate isomerase GI:18654317 from (Spinacia oleracea)

PSBO-2/PSBO2; oxygen evolving; Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type.prenyltransferase; chlorophyll synthetase, putative, identical to gi:972938 putative chlorophyll synthetase from Arabidopsis thaliana

calcium ion binding; photosystem II reaction center PsbP family protein, contains Pfam profile PF01789: PsbPSBPASE; phosphoric ester hydrolase; Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.

calcium ion binding; oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2), identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)transferase, transferring glycosyl groups; sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase, Zea mays, PIR2:JQ1329; contains non-consensus (GC) donor splice site at intron 4unknown protein; photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V, identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) (Arabidopsis thaliana); contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains

calcium ion binding; similar to oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) [Arabidopsis thaliana] (TAIR:At4g05180.1); similar to chloroplast oxygen-evolving enhancer protein [Manihot esculenta] (GB:AAV74404.1); contains InterPro domain Twin-arginine translocation pathway signal (InterPro:IPR006311); contains InterPro domain Oxygen evolving enhancer 3 (InterPro:IPR008797)unknown protein; pentatricopeptide (PPR) repeat-containing protein, contains INTERPRO:IPR002885 PPR repeatsFMN binding / oxidoreductase; quinone reductase family protein, similar to 1,4-benzoquinone reductase (Phanerochaete chrysosporium)(GI:4454993); similar to Trp repressor binding protein (Escherichia coli)(SP|P30849); contains flavodoxin domain PF00258unknown protein; photosystem II reaction centre W (PsbW) family protein, contains Pfam profile: PF03912 photosystem II reaction centre W protein, PsbWhydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATP synthase family, contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140calcium ion binding; oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative, similar to Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (SP:P14226) {Pisum sativum}

unknown protein; similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At1g04920.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At5g20280.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At4g10120.1); similar to sucrose phosphate synthase [Lycopersicon esculentum] (GB:AAU29197.1); similar to sucrose-6-phosphate synthase [Nicotiana tabacum] (GB:AAF06792.1); similar to sucrose-phosphate synthase (EC 2.4.1.14) - spinach (GB:JQ2277); similar to sucrose-phosphate synthase [Solanum tuberosum] (GB:CAA51872.1); similar to sucrose phosphate synthase [Actinidia chinensis] (GB:AAL86360.1); contains InterPro domain Glycosyl transferase, group 1 (InterPro:IPR001296)unknown protein; oxygen-evolving complex-related, 23 kDa polypeptide of water-oxidizing complex of photosystem II, Nicotiana tabacum, EMBL:NT23WOP2Boxoglutarate:malate antiporter; oxoglutarate/malate translocator, putative, similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364transferase, transferring glycosyl groups; sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase (EC 2.4.1.14) isoform 1 - Citrus unshiu, EMBL:AB005023

ribulose-bisphosphate carboxylase; ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B), identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}

FMN binding / oxidoreductase; similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:At4g27270.1); similar to unknown [Prunus armeniaca] (GB:AAD38143.1); contains InterPro domain Flavodoxin/nitric oxide synthase (InterPro:IPR008254)phosphoric ester hydrolase; fructose-1,6-bisphosphatase family protein, similar to SP|P22418 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Spinacia oleracea}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase

chlorophyll binding; chlorophyll A-B binding protein CP29 (LHCB4), identical to CP29 (Arabidopsis thaliana) GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding proteinchlorophyll binding; chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative, strong similarity to SP|P13869 Chlorophyll A-B binding protein, chloroplast precursor (LHCI type II CAB) {Petunia hybrida}; contains Pfam profile: PF00504 chlorophyll A-B binding protein

structural constituent of ribosome; plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative, similar to SP|P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)unknown protein; plastid-specific ribosomal protein-related, contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from (Spinacia oleracea)

cinnamoyl-CoA reductase; cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311)

4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|Q9S725 from Arabidopsis thaliana and SP|P17814 from Oryza sativa; contains Pfam AMP-binding enzyme domain PF005014-coumarate-CoA ligase; AMP-dependent synthetase and ligase family protein, similar to SP|Q42524 and SP|Q9S725; contains Pfam AMP-binding enzyme domain PF005014-coumarate-CoA ligase; 4-coumarate--CoA ligase family / 4-coumaroyl-CoA synthase family, similar to SP|Q42524 and SP|Q9S725; contains Pfam AMP-binding enzyme domain PF005014-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|P14912 and SP|P14913 from Petroselinum crispum; contains Pfam AMP-binding enzyme domain PF00501oxidoreductase; oxidoreductase family protein, similar to dihydroflavonol 4-reductase GI:1332411 from (Rosa hybrida), cinnamoyl CoA reductase from Pinus taeda (gi:17978649), Eucalyptus gunnii (gi:2058311)oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP|P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain


iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (flavonone-3-hydroxylase) (SP|Q06942)(Malus domestica); contains PF03171 2OG-Fe(II) oxygenase superfamily domainUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile PF00201: UDP-glucoronosyl and UDP-glucosyl transferase; contains similarity to flavonol 3-o-glucosyltransferase 5 from (Manihot esculenta)transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferasetransferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferaseunknown protein; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Citrus unshiu)(gi:4126403), leucoanthocyanidin dioxygenase (Daucus carota)(gi:5924383); contains PF03171 2OG-Fe(II) oxygenase superfamily domainoxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase SP|Q96330 {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyiron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyflavonol synthase/ iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains similarity to flavonol synthase (FLS) from (Solanum tuberosum) SP|Q41452, {Petunia hybrida} SP|Q07512; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familycatalytic; 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (4CL), similar to 4CL2 (gi:12229665) and 4CL1 (gi:12229649) from (Arabidopsis thaliana), 4CL1 (gi:12229631) from Nicotiana tabacum

transferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (Dianthus caryophyllus)(SP|Q05964), hyoscyamine 6 beta-hydroxylase (Atropa belladonna)(gi:4996123); contains PF03171 2OG-Fe(II) oxygenase superfamily domainunknown protein; leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative, similar to SP|P51091 (Malus domestica); contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamilycinnamyl-alcohol dehydrogenase; dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416




flavonol synthase; flavonol synthase, putative, similar to flavonol synthase from Arabidopsis thaliana (SP|Q96330), Matthiola incana (SP|O04395); contains Pfam profile PF03171 2OG-Fe(II) oxygenase superfamilytransferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferasetransferase, transferring glycosyl groups; glycosyltransferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.

flavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1) {Arabidopsis thaliana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyflavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS1) from Arabidopsis thalianaunknown protein; flavonol synthase, putative, similar to SP|Q96330; contains Pfam profile PF03171: 2OG-Fe(II) oxygenase superfamily

ammonia ligase/ ammonia-lyase; phenylalanine ammonia-lyase, putative, similar to phenylalanine ammonia-lyase GB:S48726 (Petroselinum crispum)

unknown protein; pinoresinol-lariciresinol reductase, putative, similar to pinoresinol-lariciresinol reductase TH1 (Tsuga heterophylla)(GI:7578915); contains isoflavone reductase domain PF02716

iron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), anthocyanidin synthase (Torenia fournieri)(GI:12583673); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

fructose-bisphosphate aldolase; similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:At4g38970.2); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741)catalytic/ sucrose-phosphatase; sucrose-phosphatase 1 (SPP1), identical to sucrose-phosphatase (SPP1) (Arabidopsis thaliana) GI:11127757ribose-5-phosphate isomerase; ribose 5-phosphate isomerase-related, similar to ribose-5-phosphate isomerase GI:18654317 from (Spinacia oleracea)

PSBO-2/PSBO2; oxygen evolving; Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type.prenyltransferase; chlorophyll synthetase, putative, identical to gi:972938 putative chlorophyll synthetase from Arabidopsis thaliana

SBPASE; phosphoric ester hydrolase; Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.

calcium ion binding; oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2), identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)transferase, transferring glycosyl groups; sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase, Zea mays, PIR2:JQ1329; contains non-consensus (GC) donor splice site at intron 4unknown protein; photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V, identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) (Arabidopsis thaliana); contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains

calcium ion binding; similar to oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2) [Arabidopsis thaliana] (TAIR:At4g05180.1); similar to chloroplast oxygen-evolving enhancer protein [Manihot esculenta] (GB:AAV74404.1); contains InterPro domain Twin-arginine translocation pathway signal (InterPro:IPR006311); contains InterPro domain Oxygen evolving enhancer 3 (InterPro:IPR008797)

FMN binding / oxidoreductase; quinone reductase family protein, similar to 1,4-benzoquinone reductase (Phanerochaete chrysosporium)(GI:4454993); similar to Trp repressor binding protein (Escherichia coli)(SP|P30849); contains flavodoxin domain PF00258unknown protein; photosystem II reaction centre W (PsbW) family protein, contains Pfam profile: PF03912 photosystem II reaction centre W protein, PsbWhydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATP synthase family, contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140calcium ion binding; oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative, similar to Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (SP:P14226) {Pisum sativum}

unknown protein; similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At1g04920.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At5g20280.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At4g10120.1); similar to sucrose phosphate synthase [Lycopersicon esculentum] (GB:AAU29197.1); similar to sucrose-6-phosphate synthase [Nicotiana tabacum] (GB:AAF06792.1); similar to sucrose-phosphate synthase (EC 2.4.1.14) - spinach (GB:JQ2277); similar to sucrose-phosphate synthase [Solanum tuberosum] (GB:CAA51872.1); similar to sucrose phosphate synthase [Actinidia chinensis] (GB:AAL86360.1); contains InterPro domain Glycosyl transferase, group 1 (InterPro:IPR001296)unknown protein; oxygen-evolving complex-related, 23 kDa polypeptide of water-oxidizing complex of photosystem II, Nicotiana tabacum, EMBL:NT23WOP2Boxoglutarate:malate antiporter; oxoglutarate/malate translocator, putative, similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364transferase, transferring glycosyl groups; sucrose-phosphate synthase, putative, similar to sucrose-phosphate synthase (EC 2.4.1.14) isoform 1 - Citrus unshiu, EMBL:AB005023

chlorophyll binding; chlorophyll A-B binding protein CP29 (LHCB4), identical to CP29 (Arabidopsis thaliana) GI:298036; contains Pfam profile: PF00504 chlorophyll A-B binding proteinchlorophyll binding; chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative, strong similarity to SP|P13869 Chlorophyll A-B binding protein, chloroplast precursor (LHCI type II CAB) {Petunia hybrida}; contains Pfam profile: PF00504 chlorophyll A-B binding protein

structural constituent of ribosome; plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative, similar to SP|P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)unknown protein; plastid-specific ribosomal protein-related, contains similarity to plastid-specific ribosomal protein 6 precursor GI:7578927 from (Spinacia oleracea)

4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|Q9S725 from Arabidopsis thaliana and SP|P17814 from Oryza sativa; contains Pfam AMP-binding enzyme domain PF00501

4-coumarate-CoA ligase; 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP|P14912 and SP|P14913 from Petroselinum crispum; contains Pfam AMP-binding enzyme domain PF00501oxidoreductase; oxidoreductase family protein, similar to dihydroflavonol 4-reductase GI:1332411 from (Rosa hybrida), cinnamoyl CoA reductase from Pinus taeda (gi:17978649), Eucalyptus gunnii (gi:2058311)oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP|P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain


iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (flavonone-3-hydroxylase) (SP|Q06942)(Malus domestica); contains PF03171 2OG-Fe(II) oxygenase superfamily domainUDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile PF00201: UDP-glucoronosyl and UDP-glucosyl transferase; contains similarity to flavonol 3-o-glucosyltransferase 5 from (Manihot esculenta)

unknown protein; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Citrus unshiu)(gi:4126403), leucoanthocyanidin dioxygenase (Daucus carota)(gi:5924383); contains PF03171 2OG-Fe(II) oxygenase superfamily domainoxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase SP|Q96330 {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyiron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyflavonol synthase/ iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains similarity to flavonol synthase (FLS) from (Solanum tuberosum) SP|Q41452, {Petunia hybrida} SP|Q07512; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familycatalytic; 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (4CL), similar to 4CL2 (gi:12229665) and 4CL1 (gi:12229649) from (Arabidopsis thaliana), 4CL1 (gi:12229631) from Nicotiana tabacum

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to naringenin,2-oxoglutarate 3-dioxygenase (Dianthus caryophyllus)(SP|Q05964), hyoscyamine 6 beta-hydroxylase (Atropa belladonna)(gi:4996123); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

cinnamyl-alcohol dehydrogenase; dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family, similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416




flavonol synthase; flavonol synthase, putative, similar to flavonol synthase from Arabidopsis thaliana (SP|Q96330), Matthiola incana (SP|O04395); contains Pfam profile PF03171 2OG-Fe(II) oxygenase superfamily

4-coumarate-CoA ligase/ fatty-acyl-CoA synthase; Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.

flavonol synthase; flavonol synthase, putative, similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1) {Arabidopsis thaliana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family


fructose-bisphosphate aldolase; similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:At4g38970.2); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741)

PSBO-2/PSBO2; oxygen evolving; Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type.

SBPASE; phosphoric ester hydrolase; Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.

calcium ion binding; oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ2), identical to SP|Q41932 Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Arabidopsis thaliana}; similar to SP|P12301 Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) {Spinacia oleracea}; contains Pfam profile PF05757: Oxygen evolving enhancer protein 3 (PsbQ)

unknown protein; photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V, identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) (Arabidopsis thaliana); contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains


FMN binding / oxidoreductase; quinone reductase family protein, similar to 1,4-benzoquinone reductase (Phanerochaete chrysosporium)(GI:4454993); similar to Trp repressor binding protein (Escherichia coli)(SP|P30849); contains flavodoxin domain PF00258

hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances; ATP synthase family, contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140calcium ion binding; oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative, similar to Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (SP:P14226) {Pisum sativum}

unknown protein; similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At1g04920.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At5g20280.1); similar to sucrose-phosphate synthase, putative [Arabidopsis thaliana] (TAIR:At4g10120.1); similar to sucrose phosphate synthase [Lycopersicon esculentum] (GB:AAU29197.1); similar to sucrose-6-phosphate synthase [Nicotiana tabacum] (GB:AAF06792.1); similar to sucrose-phosphate synthase (EC 2.4.1.14) - spinach (GB:JQ2277); similar to sucrose-phosphate synthase [Solanum tuberosum] (GB:CAA51872.1); similar to sucrose phosphate synthase [Actinidia chinensis] (GB:AAL86360.1); contains InterPro domain Glycosyl transferase, group 1 (InterPro:IPR001296)

chlorophyll binding; chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative, strong similarity to SP|P13869 Chlorophyll A-B binding protein, chloroplast precursor (LHCI type II CAB) {Petunia hybrida}; contains Pfam profile: PF00504 chlorophyll A-B binding protein

structural constituent of ribosome; plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative, similar to SP|P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP|P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain


UDP-glycosyltransferase/ transferase, transferring glycosyl groups; UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile PF00201: UDP-glucoronosyl and UDP-glucosyl transferase; contains similarity to flavonol 3-o-glucosyltransferase 5 from (Manihot esculenta)

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase SP|Q96330 {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyiron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyflavonol synthase/ iron ion binding / isopenicillin-N synthase; oxidoreductase, 2OG-Fe(II) oxygenase family protein, contains similarity to flavonol synthase (FLS) from (Solanum tuberosum) SP|Q41452, {Petunia hybrida} SP|Q07512; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family

PSBO-2/PSBO2; oxygen evolving; Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type.


unknown protein; photosystem I reaction center subunit XI, chloroplast (PSI-L) / PSI subunit V, identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI-L) (PSI subunit V) (Swiss-Prot:Q9SUI4) (Arabidopsis thaliana); contains Pfam profile PF02605: photosystem I reaction center subunit XI; contains 2 transmembrane domains


calcium ion binding; oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative, similar to Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (SP:P14226) {Pisum sativum}



phosphoric ester hydrolase; fructose-1,6-bisphosphatase family protein, similar to SP|P22418 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Spinacia oleracea}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase

chlorophyll binding; chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative, strong similarity to SP|P13869 Chlorophyll A-B binding protein, chloroplast precursor (LHCI type II CAB) {Petunia hybrida}; contains Pfam profile: PF00504 chlorophyll A-B binding protein

structural constituent of ribosome; plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative, similar to SP|P82412 Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) {Spinacia oleracea}; contains Pfam profile PF04839: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase GI:311658 from (Petunia hybrida), leucoanthocyanidin dioxygenase (Malus domestica)(SP|P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain

oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase SP|Q96330 {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase familyiron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family



calcium ion binding; oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative, similar to Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (SP:P14226) {Pisum sativum}


iron ion binding / isopenicillin-N synthase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to SP|P24397 Hyoscyamine 6-dioxygenase (EC 1.14.11.11) (Hyoscyamine 6-beta- hydroxylase) {Hyoscyamus niger}, SP|Q05965 Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone- 3-hydroxylase) (F3H) (FHT) {Matthiola incana}; contains Pfam profile PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family

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