Post on 23-Dec-2015
Web Interfaces and Data Web Interfaces and Data PortalsPortals
John Porter
Department of Environmental Sciences
University of Virginia
Roadmap
Goals for web data access The web interface "tool box" Putting the pieces together Content management systems Exercises
Goals for Ecological Databases
Easy to use – no specialized training required
Able to locate/discover data Able to produce data in desired forms
» Data files» Graphs and Maps» Specialized formats
Users can understand and use data
Circa 1994- The World Wide Web
Availability nearly universal » access rapidly increasing
Easy to use – point and click Difficult to update source
documents» Need to edit static text documents
Circa 1994 - Databases
Difficult and specialized interfaces Powerful capabilities
» Query» Update» Output
Suitable for “about 10%” of ecological data management problems (Gorentz, pers. comm.)
Now!
Web+
DatabaseNew Power!
ubiquitous easy to use easy to query and
update
Examples
An early use, in the Internet Movie Database (http://www.imdb.com) links movies with actors and vis versa» Search for a movie» Get a list of actors» Click on actor’s name to get list of movies
they were in
Retrieve customized data via a web form linked to a database
The Web Portal Toolkit
We have all seen (and used) web pages that were linked to databases
But, HOW IS IT DONE?» Actually there are MANY ways to link
databases and web pages using a wide variety of tools
Piece #1 Web Forms<H1>A Simple Form</H1>
<FORM ACTION=“/cgi-bin/test.cgi" METHOD=get >
<H2>Simple input of a string</H2>
<P>Input a sentence:
<INPUT NAME=inputstring SIZE=60> </P>
<INPUT TYPE=SUBMIT>
</FORM>
Tools: Stand-alone Computer Languages
Visual Basic » PC’s only
C & C++ » powerful (but with power comes responsibility)
Pattern Extraction and Regular expression Language – PERL» Strong search and parsing capabilities
JAVA – object oriented Many more (Python, etc.)
Tools: Computer Languages you can Insert in a Web Page
Active Server Pages – ASP» Works primarily with Microsoft products» Insert Microsoft Visual Basic into web
pages PHP
» open source» Works on a wide number of platforms
Specialized languages associated with specific products (e.g., LITE)
Tools: Languages that Run on your Browser
Active X» Microsoft Internet Explorer only
JAVAscript» Lightweight programs
JAVA» Full-featured object-oriented programs
Tools: Relational Databases
Commercial Databases» Oracle» Microsoft SQL Server
Open Source Databases» MySQL» SQLite (lightweight, limited functions)
All provide:» Structured Query Language (SQL)» Application Programming Interfaces (APIs) to
interact with computer languages
Putting the Pieces Together
Web forms Interface» Web authoring tools like DREAMWEAVER
can automate linking web forms to databases
Computer Programs» Stored & run on Web Server» Stored in web page & run on Web Server» Stored on Web Server & run on Server» Stored in web page & run on Client
Database
Client-Server Architecture
WWW Browser
WWW ServerWWW Server
JAVA
Internet
HTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML file
WWW Server Software
CGI-BINScripts
WWW ClientWWW Client
CGI or SCRIPTS
Apache and others» If you see /cgi-bin/ in a web address, it is running a
program stored in the cgi-bin directory of the server
» CGI stands for “Common Gateway Interface” » it defines the ways to communicate information
between the server and the client Microsoft IIS
» Uses the “scripts” directory on the server to store programs
Client-Server Architecture
WWW Browser
WWW ServerWWW Server
Internet
HTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML file
WWW Server Software
WWW ClientWWW Client
Basic configuration for serving static documents
Adding a Database
WWW Browser
WWW ServerWWW Server
Internet
HTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML file
WWW Server Software
CGI-BINScripts
WWW ClientWWW Client
Database
Database Programs in HTML Documents
Usually webmasters do NOT allow users to add programs to the cgi-bin directory» Dangerous – programs run on the server so only
trusted programs should be in cgi-bin
So, instead a general CGI program (such as PHP) is used to read specific database programs that are integrated into a web page
Adding a Database
WWW Browser
WWW ServerWWW Server
Internet
HTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML fileHTML file
WWW Server Software
CGI-BINScripts
WWW ClientWWW Client
Database
Example Program
This example program uses PHP to talk to a MYSQL relational database
The details of each step will differ between databases and languages, but will share many similarities
Here we insert information from a web form into a database and retrieve an observation number for later use.
/* Connecting, selecting database *//* Connecting, selecting database */ $link = mysql_connect("data.vcrlter.virginia.edu", “myID")$link = mysql_connect("data.vcrlter.virginia.edu", “myID") or die("Could not connect");or die("Could not connect"); mysql_select_db("www") or die("Could not select mysql_select_db("www") or die("Could not select database");database");
/* Performing SQL query *//* Performing SQL query */$query = "insert into waiver $query = "insert into waiver (date_req,station,name,isVert,healthtype) (date_req,station,name,isVert,healthtype) values('" . date("Y-m-d") . ','$_REQUEST[station]', values('" . date("Y-m-d") . ','$_REQUEST[station]', ‘$_REQUEST[fullname]','Y', $_REQUEST[health])"; ‘$_REQUEST[fullname]','Y', $_REQUEST[health])";
$result = mysql_query($query) or die("Unable to log waiver $result = mysql_query($query) or die("Unable to log waiver creation, Query failed");creation, Query failed");
$query = "select max(waiver_num) as waiver_num from $query = "select max(waiver_num) as waiver_num from waiver";waiver";$result = mysql_query($query) or die("Unable to get waiver $result = mysql_query($query) or die("Unable to get waiver number, Query failed");number, Query failed");extract(mysql_fetch_assoc($result));extract(mysql_fetch_assoc($result)); mysql_close($link);mysql_close($link);
Open Open connectionconnection
Set up Set up insertinsert
Store result Store result as PHP as PHP variablevariable
SelectSelect databasedatabase
Run Insert Run Insert QueryQuery
Set up querySet up query
Run QueryRun Query
DON’T PANIC!
By now, you may be swamped with new information, so keep in mind:» There are good tutorials or books to walk
you through the intricacies of SQL, PHP, etc.
» Example programs can frequently be adapted for your use
» Some tools for creating database-enabled web pages can automate many of the basic tasks (e.g., Dreamweaver has basic web form and database interfaces)
Web Portals Made Easy –Content Management
Systems
Content Management Systems (CMS)» Store ALL the web content in a database (not just
data and metadata)» Provide pre-written “modules” containing
– Web form-based interfaces– Associated database programs
» These modules are designed to be easy to use by even novice webmasters to provide specific functions on a web page
Examples are PostNuke, SlashDot, OpenCMS, WIKI
A sample web site developed using POSTNUKE
Administration Page for PostNuke Web Site
Content Management Systems
Advantages» Easy to configure and use» Allow input from users (subject to login)» Many pre-existing modules
Disadvantages» Existing modules may not meet your needs» May be difficult to extract content or
transition to other systems
System Requirements for CMS
To use a CMS, you will need» A Relational Database (e.g., Oracle,
MySQL)» A computer language (JAVA, PHP etc.)» A web server
For example, PostNuke, by default, requires PHP and a MySQL database
Web Services
For some applications your “user” is not a person, it’s a program on another computer» E.g., Provide data to run a model or
graphical package, without human intervention
Web pages work fine for people, but are hard for programs to interpret. For this reason Web Services have developed
Features of Web Services
A Web Service provides the following functions: It “advertises” its methods (it tells you what it
can do for you) Once you select a method to invoke, the Web
Service does the required processing (often accessing a database)
It returns the result as a structured eXtensible Markup Language (XML) document, suitable for use with many types of software
Web Services
Web services tools and techniques are still undergoing rapid development and evolution. Here are some tools and standards related to that development:
SOAP – Simple Object Access Protocol» A “envelope” for packaging requests and receiving
results WSDL – Web Services Description Language
» A language for describing web services and their methods
Useful References & Tutorials
PHP – http://www.php.net MySQL – http://mysql.com HTML Forms, Web Services (SOAP,
WSDL), SQL, XML - http://www.w3schools.com/html/
SQL – http://sqlcourse.com Dreamweaver –
http://www.macromedia.com
Exercises
Learn Structured Query Language at: http://www.sqlcourse.com
Learn to Administer a real PostNuke web site at:
http://mareo.org/~jhp7e/ESA04