Post on 21-Dec-2015
Genomics based approach in Genomics based approach in ArabidopsisArabidopsis
*Arabidopsis genome sequenced in 2000
Rat r-protein sequences
BLAST algorithm search used to find Arabidopsis ribosomal protein
genes
Barakat, A. et al. (2001) Plant Physiology vol. 127, pp. 398-415
249 Total 249 Total genesgenes
80 Total 80 Total putative r-putative r-proteinsproteins
rpl7-2 rpl7-2
rps17-1, rps17-2rps17-1, rps17-2
rps16-1 rps16-1
rps25-1 rps25-1
rps4-1, rps4-1, rpl8-1rpl8-1
rpl14-1rpl14-1
rps30-1rps30-1, , rps15a-2rps15a-2
rpl28-1rpl28-1, rpl31-1, rpl31-1
rps25-2*rps25-2*
rpl4-3*rpl4-3*
rpl39-1rpl39-1
rpp2-1, rpp2-2rpp2-1, rpp2-2
rpl10a-2rpl10a-2
rps12-3rps12-3
rps3-1, rpl27-1rps3-1, rpl27-1
rpl23-2rpl23-2
rpl24-1rpl24-1
rps14-1, rpl40-1rps14-1, rpl40-1
rpl18a-2, rpl37a-1*rpl18a-2, rpl37a-1*
rps5-1, rpl36-1rps5-1, rpl36-1
rpl23a-1, rpl35-2rpl23a-1, rpl35-2
rps15a-3rps15a-3
rps26-1, rps26-2rps26-1, rps26-2
rpp0-1, rpl41-3rpp0-1, rpl41-3
rps2-3, rpl11-1, rpl38-1rps2-3, rpl11-1, rpl38-1
rpl7-3rpl7-3
rps27-1rps27-1
rps27a-2rps27a-2
rpl7a-1, rpl18-1rpl7a-1, rpl18-1
rpl12-1rpl12-1
rpl35-4, rpl36-3 rpl35-4, rpl36-3 rps23-2, rpl4-4 rps23-2, rpl4-4 rps28-2 rps28-2
rps17-4 rps17-4 rps4-2 rps4-2
rps15-2, rps15-3, rps15-4rps15-2, rps15-3, rps15-4
rps6-2rps6-2
rps9-2rps9-2rps7-3, rps16-3, rps19-2rps7-3, rps16-3, rps19-2
rps8-1, rpl10a-3rps8-1, rpl10a-3rps11-3, rpl13-4rps11-3, rpl13-4
rps21-3, rpl22-3rps21-3, rpl22-3
rps24-2, rpl18-3rps24-2, rpl18-3
rps3-3rps3-3
rps4-3*rps4-3*
rpp2-5, rpl5-2rpp2-5, rpl5-2
rps9-3, rpl5-3*rps9-3, rpl5-3*
rps10-2rps10-2
rpl3-3*rpl3-3*
rps15-5rps15-5
rpl32-2rpl32-2
rpl11-4rpl11-4
rps27-4, rpp1-3rps27-4, rpp1-3
rpl13a-4rpl13a-4
rps10-3rps10-3
rps4-4, rps8-2, rps4-4, rps8-2, rpp3-2rpp3-2
rps30-3, rpl31-3rps30-3, rpl31-3
rps15a-6rps15a-6, rpl12-3, rpl12-3
rps19-3, rps19-3, rps20-3rps20-3
rps15-6*rps15-6*
rps28-3rps28-3
rpl26-2rpl26-2
rps13-2 rps13-2
rpp1-2 rpp1-2
rpl19-3 rpl19-3
rpl9-4rpl9-4
rps18-3rps18-3
rps9-1*rps9-1*
rpl13a-3rpl13a-3
rpl27-3rpl27-3
rpl36a-2rpl36a-2
rpl15-1rpl15-1
rpl15-2rpl15-2
rpl32-1rpl32-1
rpl11-3rpl11-3
rpl14-2, rpl31-2rpl14-2, rpl31-2
rps10-1rps10-1, , rpp3-1rpp3-1
rps30-2rps30-2, , rpl28-3rpl28-3
rps11-2, rps11-2, rps15a-5rps15a-5
rps6-1, rpl39-3rps6-1, rpl39-3
rps3a-2, rps3a-2, rps25-4*rps25-4*
rps29-3, rps29-4*rps29-3, rps29-4*
rpl8-3rpl8-3
rps25-5rps25-5
rpl13a-1,rpl13a-1, rpl29-1, rpl29-2rpl29-1, rpl29-2
rps21-2, rpl36-2rps21-2, rpl36-2rpl23a-2, rps2-4 rpl23a-2, rps2-4 rpl11-2, rpl21-6*rpl11-2, rpl21-6*rps26-3, rpl35a-4, rpl41-7rps26-3, rpl35a-4, rpl41-7rps27a-3rps27a-3rpl38-2, rpl37a-3, rps13-1rpl38-2, rpl37a-3, rps13-1rps27-2, rps27-3*rps27-2, rps27-3*rpl17-2rpl17-2
rps7-2, rps19-1, rpl39-2rps7-2, rps19-1, rpl39-2rps3a-1, rps24-1rps3a-1, rps24-1rpsa-2, rps16-2, rpl23-3rpsa-2, rps16-2, rpl23-3rpl41-4rpl41-4rpl18-2, rpl22-2rpl18-2, rpl22-2rpl37a-2, rpl41-5rpl37a-2, rpl41-5rps14-2, rps17-3rps14-2, rps17-3rps5-2, rpp0-2rps5-2, rpp0-2rpp0-3rpp0-3rps28-1rps28-1rpl7-4, rpl18a-3 rpl7-4, rpl18a-3
rpl19-2, rpl19-2, rpl37-3rpl37-3rpl30-3rpl30-3rpl27-2rpl27-2rpl36a-1rpl36a-1rpl5-1, rpl13a-2rpl5-1, rpl13a-2rps21-1*rps21-1*rpp2-3, rpl34-3rpp2-3, rpl34-3rps25-3*rps25-3*rps20-1rps20-1rps29-1, rps29-2rps29-1, rps29-2rps15a-4rps15a-4, rpp2-4, rpp2-4rps20-2rps20-2rpl13-1*rpl13-1*rpl13-2, rpl13-3rpl13-2, rpl13-3rps11-1rps11-1rpl8-2, rpl26-1rpl8-2, rpl26-1rps14-3, rpl40-2rps14-3, rpl40-2rps3-3, rpl12-2rps3-3, rpl12-2rpl24-2rpl24-2rpl35-3rpl35-3
rpl28-2*, rpl28-2*, rpl41-6rpl41-6
rpl10a-1rpl10a-1
rpp1-1,rpp1-1, rpl23-1, rps15-1rpl23-1, rps15-1
rpl19-1, rpl22-1rpl19-1, rpl22-1
rps15a-1, rpl35a-1rps15a-1, rpl35a-1
rpl21-1, rpl21-2*,rpl21-1, rpl21-2*, rpl21-3rpl21-3
rpl10-1rpl10-1
rpl27a-1, rpl14-1rpl27a-1, rpl14-1
rpl35-1, rps23-1rpl35-1, rps23-1
rpl37-1, rps12-1rpl37-1, rps12-1
rpl6-1rpl6-1
rpl27a-2, rps18-1, rpl27a-2, rps18-1, rps27a-1rps27a-1
rpl10-2, rpl10-2, rpl34-1rpl34-1
rpl18a-1rpl18a-1
rpl21-4*rpl21-4*
rpl17-1rpl17-1
rpl19-1,rpl19-1, rpl19-2, rpl19-3rpl19-2, rpl19-3
rps18-2rps18-2
rpl4-2*rpl4-2*
rpl35a-2, rpl30-1rpl35a-2, rpl30-1
rpl3-1rpl3-1
rps7-1rps7-1
rpl37-2rpl37-2
rpl41-1rpl41-1, rpl21-5 , rpl21-5
rps2-1rps2-1
rpl3-2, rps2-2 rpl3-2, rps2-2
rpl10-3, rpl17-2rpl10-3, rpl17-2
rpl27a-3rpl27a-3, , rpl34-2rpl34-2
rpsa-1rpsa-1
rpl6-2rpl6-2, rpl6-3 , rpl6-3
rpl35a-3 rpl35a-3
rpl30-2 rpl30-2
rpl41-2* rpl41-2*
rps12-2* rps12-2*
rpl7-1 rpl7-1
00
1010
2020
3030
4040
5050
6060
7070
8080
9090
100100
110110
120120
130130
140140
cMcM 1 2 33 4 5
538 kb/ 538 kb/ r-proteinr-protein
436 kb/ 436 kb/ r-proteinr-protein
331 kb/ 331 kb/ r-proteinr-protein
605 kb/ 605 kb/ r-proteinr-protein
519 kb/ 519 kb/ r-proteinr-protein