Fig. 5-1

Who’s Cool???

Organic Molecules

Organic molecules are found in living things.

The chemistry of carbon accounts for the chemistry of organic molecules.

Organic molecules are macromolecules.

2-3

2-4

Hydrocarbon chains can have functional groups that cause the macromolecule to behave in a certain way.

(insert text art from top right column of page 31)

2-5

Macromolecules (polymers) are formed from smaller building blocks called monomers.

Polymer Monomer

carbohydrate monosaccharides

protein amino acid

nucleic acid nucleotide

Fig. 5-2a

Dehydration removes a watermolecule, forming a new bond

Short polymer Unlinked monomer

Longer polymer

Dehydration reaction in the synthesis of a polymer

HO

HO

HO

H2O

H

HH

4321

1 2 3

(a)

Fig. 5-2b

Hydrolysis adds a watermolecule, breaking a bond

Hydrolysis of a polymer

HO

HO HO

H2O

H

H

H321

1 2 3 4

(b)

Carbohydrates

Fig. 5-3

Dihydroxyacetone

Ribulose

Ket

ose

sA

ldo

ses

Fructose

Glyceraldehyde

Ribose

Glucose Galactose

Hexoses (C6H12O6)Pentoses (C5H10O5)Trioses (C3H6O3)

Fig. 5-4

(a) Linear and ring forms (b) Abbreviated ring structure

Glucose as a Monomer

Fig. 5-5

(b) Dehydration reaction in the synthesis of sucrose

Glucose Fructose Sucrose

MaltoseGlucoseGlucose

(a) Dehydration reaction in the synthesis of maltose

1–4glycosidic

linkage

1–2glycosidic

linkage

Fig. 5-6

(b) Glycogen: an animal polysaccharide

Starch

GlycogenAmylose

Chloroplast

(a) Starch: a plant polysaccharide

Amylopectin

Mitochondria Glycogen granules

0.5 µm

1 µm

Starch vs Glycogen

Fig. 45-12-5

Homeostasis:Blood glucose level

(about 90 mg/100 mL)

Glucagon

STIMULUS:Blood glucose level

falls.

Alpha cells of pancreasrelease glucagon.

Liver breaksdown glycogenand releasesglucose.

Blood glucoselevel rises.

STIMULUS:Blood glucose level

rises.

Beta cells ofpancreasrelease insulininto the blood.

Liver takesup glucoseand stores itas glycogen.

Blood glucoselevel declines.

Body cellstake up moreglucose.

Insulin

Fig. 5-7bc

(b) Starch: 1–4 linkage of glucose monomers

(c) Cellulose: 1–4 linkage of glucose monomers

Starch vs Cellulose

Fig. 5-8

Glucosemonomer

Cellulosemolecules

Microfibril

Cellulosemicrofibrilsin a plantcell wall

0.5 µm

10 µm

Cell walls

Table 5-1

Fig. 45-6-2

cAMP Secondmessenger

Adenylylcyclase

G protein-coupledreceptor

ATP

GTP

G protein

Epinephrine

Inhibition ofglycogen synthesis

Promotion ofglycogen breakdown

Proteinkinase A

Fig. 45-10Major endocrine glands:

Adrenalglands

Hypothalamus

Pineal gland

Pituitary gland

Thyroid gland

Parathyroid glands

Pancreas

Kidney

Ovaries

Testes

Organs containingendocrine cells:

Thymus

Heart

Liver

Stomach

Kidney

Smallintestine

Proteins

• Are composed of long chains of amino acids.

• These chains are coded for by the DNA in our nuclei.

Fig. 5-UN1

Aminogroup

Carboxylgroup

carbon

Fig. 5-17Nonpolar

Glycine(Gly or G)

Alanine(Ala or A)

Valine(Val or V)

Leucine(Leu or L)

Isoleucine(Ile or I)

Methionine(Met or M)

Phenylalanine(Phe or F)

Trypotphan(Trp or W)

Proline(Pro or P)

Polar

Serine(Ser or S)

Threonine(Thr or T)

Cysteine(Cys or C)

Tyrosine(Tyr or Y)

Asparagine(Asn or N)

Glutamine(Gln or Q)

Electricallycharged

Acidic Basic

Aspartic acid(Asp or D)

Glutamic acid(Glu or E)

Lysine(Lys or K)

Arginine(Arg or R)

Histidine(His or H)

Peptidebond

Fig. 5-18

Amino end(N-terminus)

Peptidebond

Side chains

Backbone

Carboxyl end(C-terminus)

(a)

(b)

Fig. 5-21

PrimaryStructure

SecondaryStructure

TertiaryStructure

pleated sheet

Examples ofamino acidsubunits

+H3N Amino end

helix

QuaternaryStructure

Fig. 5-16

Enzyme(sucrase)

Substrate(sucrose)

Fructose

Glucose

OH

HO

H2O

Check out the shape of this protein!

Fig. 5-21a

Amino acidsubunits

+H3N

Amino end

25

20

15

10

5

1

Primary Structure

Fig. 5-21b

Amino acidsubunits

+H3N Amino end

Carboxyl end125

120

115

110

105

100

95

9085

80

75

20

25

15

10

5

1

Fig. 5-21c

Secondary Structure

pleated sheet

Examples ofamino acidsubunits

helix

Fig. 5-21f

Polypeptidebackbone

Hydrophobicinteractions andvan der Waalsinteractions

Disulfide bridge

Ionic bond

Hydrogenbond

Fig. 5-21e

Tertiary Structure Quaternary Structure

Fig. 5-21g

Polypeptidechain

Chains

HemeIron

Chains

CollagenHemoglobin

Fig. 5-22c

Normal red bloodcells are full ofindividualhemoglobinmolecules, each carrying oxygen.

Fibers of abnormalhemoglobin deformred blood cell intosickle shape.

10 µm 10 µm

Fig. 5-22

Primarystructure

Secondaryand tertiarystructures

Quaternarystructure

Normalhemoglobin(top view)

Primarystructure

Secondaryand tertiarystructures

Quaternarystructure

Function Function

subunit

Molecules donot associatewith oneanother; eachcarries oxygen.

Red bloodcell shape

Normal red bloodcells are full ofindividualhemoglobinmoledules, eachcarrying oxygen.

10 µm

Normal hemoglobin

1 2 3 4 5 6 7

Val His Leu Thr Pro Glu Glu

Red bloodcell shape

subunit

Exposedhydrophobicregion

Sickle-cellhemoglobin

Moleculesinteract withone another andcrystallize intoa fiber; capacityto carry oxygenis greatly reduced.

Fibers of abnormalhemoglobin deformred blood cell intosickle shape.

10 µm

Sickle-cell hemoglobin

GluProThrLeuHisVal Val

1 2 3 4 5 6 7

Fig. 5-26-3

mRNA

Synthesis ofmRNA in thenucleus

DNA

NUCLEUS

mRNA

CYTOPLASM

Movement ofmRNA into cytoplasmvia nuclear pore

Ribosome

AminoacidsPolypeptide

Synthesisof protein

1

2

3

Fig. 5-23

Normal protein Denatured protein

Denaturation

Renaturation

Lipids3 Classes

Triglycerides

Phospholipids

Steroids

Fig. 5-11a

Fatty acid(palmitic acid)

(a) Dehydration reaction in the synthesis of a fat

Glycerol

Triglycerides

• Are used to store energy, insulate, and protect.

• Are composed of long fatty acid chains attached to a glycerol backbone

• Have a lot of bonds in their FACs and therefore store “a whole whack” of energy!

Fig. 5-11b

(b) Fat molecule (triglyceride)

Ester linkage

Fig. 5-12a

(a) Saturated fat

Structuralformula of asaturated fatmolecule

Stearic acid, asaturated fattyacid

Fig. 5-12b

(b) Unsaturated fat

Structural formulaof an unsaturatedfat molecule

Oleic acid, anunsaturatedfatty acid

cis doublebond causesbending

Phospholipids

• Make up the cell membrane and membranous organelles.

• Are composed of two fatty acid chains and a phosphate group attached to a glycerol backbone.

• Have a polar “head” and a non-polar (neutral) “tail”.

Fig. 5-13

(b) Space-filling model(a) (c)Structural formula Phospholipid symbol

Fatty acids

Hydrophilichead

Hydrophobictails

Choline

Phosphate

Glycerol

Hyd

rop

ho

bic

tai

lsH

ydro

ph

ilic

hea

d

Fig. 5-14

Hydrophilichead

Hydrophobictail WATER

WATER

Emulsification

Steroids

• Commonly act as hormones that will “turn on” or “turn off” genes.

• Are made of four fused carbon rings and differ mostly because of their “attachments” (side branches)

• Can travel right through the cell membrane as they are non-polar.

Fig. 5-15

Spot the difference …

Fig. 45-10Major endocrine glands:

Adrenalglands

Hypothalamus

Pineal gland

Pituitary gland

Thyroid gland

Parathyroid glands

Pancreas

Kidney

Ovaries

Testes

Organs containingendocrine cells:

Thymus

Heart

Liver

Stomach

Kidney

Smallintestine

Fig. 45-7-2

Hormone(estradiol)

Hormone-receptorcomplex

Plasmamembrane

Estradiol(estrogen)receptor

DNA

VitellogeninmRNA

for vitellogenin

Nucleic Acids

• Have monomers called nucleotides.

• Nucleotides are composed of a sugar attached to a phosphate group and a nitrogenous base.

Three TypesDNARNAATP

Fig. 5-27ab5' end

5'C

3'C

5'C

3'C

3' end

(a) Polynucleotide, or nucleic acid

(b) Nucleotide

Nucleoside

Nitrogenousbase

3'C

5'C

Phosphategroup Sugar

(pentose)

Fig. 5-27

5 end

Nucleoside

Nitrogenousbase

Phosphategroup Sugar

(pentose)

(b) Nucleotide

(a) Polynucleotide, or nucleic acid

3 end

3C

3C

5C

5C

Nitrogenous bases

Pyrimidines

Cytosine (C) Thymine (T, in DNA) Uracil (U, in RNA)

Purines

Adenine (A) Guanine (G)

Sugars

Deoxyribose (in DNA) Ribose (in RNA)

(c) Nucleoside components: sugars

Fig. 5-27c-1

(c) Nucleotide components: nitrogenous bases

Purines

Guanine (G)Adenine (A)

Cytosine (C) Thymine (T, in DNA) Uracil (U, in RNA)

Nitrogenous bases

Pyrimidines

Fig. 5-27c-2

Ribose (in RNA)Deoxyribose (in DNA)

Sugars

(c) Nucleoside components: sugars

DNA RNA• stays in nucleus.• contains sections called genes which code for proteins (amino acid sequences).• is the genetic material passed on to offspring during reproduction .

• is copied from our DNA.• leaves nucleus to allow proteins to be made in the cytoplasm.• is temporary as it is broken down shortly after being used.

Fig. 8-8

Phosphate groupsRibose

Adenine

ATP

Fig. 8-9

Inorganic phosphate

Energy

Adenosine triphosphate (ATP)

Adenosine diphosphate (ADP)

P P

P P P

P ++

H2O

i

Fig. 9-20

Proteins

Carbohydrates

Aminoacids

Sugars

Fats

Glycerol Fattyacids

Glycolysis

Glucose

Glyceraldehyde-3-

Pyruvate

P

NH3

Acetyl CoA

Citricacidcycle

Oxidativephosphorylation

Fig. 5-UN2

Fig. 5-UN2a

Fig. 5-UN2b