© 2008 by Justin Miranda; made available under the EPL v1.0 | 18 March 2008 Using Eclipse BIRT in...

Using Eclipse BIRT in

… seriously!

Justin Mirandajustin@openmrs.org

Apologies

PartnersIn Health

Where we work

Rwinkwavu, Rwanda

Inshuti Mu Buzima Rwinkwavu, Rwanda6

What we do

Health Facility

Before After

Health Facilities

Before After

Medication

Housing

Before After

Education

Mountains Beyond Mountains

Real World Challenges

HTTP Packet

Slow Internet

Power SurgesViruses

Power Outage

Power Outages (very common where we work)

Multiple Languages

We work in remote locations …

Paper … lots of it!

What the heck is OpenMRS?

Open Source Medical Record System

Community

Collaboration

Architecture

Buzzword Soup

Tomcat

Eclipse IDE

BIRT RCP Designer

Why did we choose BIRT?

Feature-Rich Design Tool

Multiple Output Types

.pdf .doc .xls .html

… and more

Extensibility

Configurability

Power Outage

Built-in Surge Protection

… that is a joke

So how does OpenMRS use BIRT?

BIRT Runtime Engine API BIRT Design Engine API

Integration

Extension

Open Data Access API

BIRT RCP Designer

Design

Simple Charts

Data Quality Reports

Form Completeness

Complex Reports

Enrollments By Gender and Age

Patient Summary

Clinical Summary

Critical Reports

Patients Lost to Follow-Up(Translation: Patients who have missed multiple visits)

How do we integrate & extend BIRT?

Complex Data Model

Simple Approach

Date Patient Weight Height XRay

Monday Smith 190 lbs. 71 in. null

Tuesday Jones 180 lbs. 74 in. <xml>

Observation

ProblemsHow do I add a new observation type (i.e. Pulse)?What if weight, height, and X-ray observations were taken on different days?How do I store multiple Weights for a patient?

How do I add Pulse?

Date Patient Weight Height XRay … Pulse

Monday Smith 190 lbs. 71 in. <xml> … null

Tuesday Jones 180 lbs. 74 in. <xml> … null

alter table observation add column pulse integer(10);

Concept Dictionary

Date Patient Concept Value

Monday Smith Weight 190

Friday Smith Height 71

Tuesday Jones Weight 180

Tuesday Jones Height 74

Concept DataType Units

Weight Numeric Pounds

Height Numeric Inches

Xray Complex None

Date Patient Weight Height XRay

Monday Smith 190 lbs. 71 in. null

Tuesday Jones 180 lbs. 74 in. <xml>

DataMeta Data

Observation

ObservationConcept

How do I add Pulse?

Date Patient Concept Value

Monday Smith Weight 190

Friday Smith Height 71

Tuesday Jones Weight 180

Tuesday Jones Height 74

Friday Smith Weight 191

Concept DataType Units

Weight Numeric Pounds

Height Numeric Inches

Xray Complex None

Pulse Numeric Beats Per Minute

Observation Concept

How does this make the data model less complex?

SELECT obs.value

FROM patient, obs, concept

WHERE patient.patient_id = obs.patient_id

AND concept.concept_id = obs.concept_id

AND concept.concept_name = ‘WEIGHT’

AND patient.patient_id = ?

ORDER BY obs.obsdatetime DESC LIMIT 1

But OpenMRS makes it simple!

OpenMRSLogic Service

191.0 lbs“LAST WEIGHT”

LogicService.evaluate(patients, “LAST WEIGHT”)

Integrating BIRT

Architecture

OpenMRS uses DEAPI and REAPI

Design Engine API

<xml>ReportDesign(.rptdesign)

OpenMRS BIRT Report Module

<csv>DataSet

(.csv)

Report Engine API

<xml>ReportDoc

(.rptdocument)

Export Dataset

Prepare Dataset

Run Report

4Modify Report

Export Dataset

PatientID LAST CD4 COUNT

LAST WEIGHT

HIV POSITIVE

ENROLLED DATE

1 390 55.0 TRUE 01/01/2008

2 500 59.0 TRUE 02/01/2008

3 203 53.0 TRUE 03/01/2008

4 429 50.0 TRUE 03/07/2008

5 1023 81.0 FALSE 03/10/2008

6 139 49.0 TRUE 03/18/2008

DataSet_03_18_2008.csv

OpenMRS Report Module

Design Engine API

<csv>DataSet

(.csv)

Report Engine API

<xml>ReportDoc

(.rptdocument)

Export Dataset

Prepare Dataset

Run Report

4Modify Report

Prepare Dataset (Design Engine API)

<?xml version="1.0" encoding="UTF-8"?><report> ...

<data-sources> <oda-data-source>

<property name="HOME"> /tmp/birt/reports/datasets

</property> </oda-data-source></data-sources><data-sets> <oda-data-set>

<property name="queryText"> select * from DataSet_03_18_2008.csv </property>

</oda-data-set></datasets>

...</report>

Design Engine API

BirtReportService.prepareDataset()

DataSourceHandle.setProperty()

OdaDataSetHandle.setQueryText()

ReportDesignHandle.save()

OpenMRS Report Module

Design Engine API

<csv>DataSet

(.csv)

Report Engine API

<xml>ReportDoc

(.rptdocument)

Export Dataset

Prepare Dataset

Run Report

4Modify Report

Run Report (Report Engine API)

Extending BIRT

OpenMRS ODA Plugin

Report Designer

SQL Flat FileXMLWeb

Service(SOAP)

OpenMRS(REST)

XMLData

CSVData

OpenMRSLogic

REST API??

Select OpenMRS Data Source

Configure Connection

Create Data Set

OpenMRSLogic

REST API

GET COLUMNS

<Columns> <Column>PATIENT ID</Column> <Column>CD4 COUNT</Column> <Column>WEIGHT</Column> ...</Columns>

Report Designer

SQL Flat FileXMLWeb

Service(SOAP)

OpenMRS(REST)

Get Columns

Select Columns

Report Designer

Execute Query

OpenMRS(REST)

OpenMRSLogic

REST API

GET PATIENT ID, LAST WEIGHT, LAST CD4 COUNT FROM PATIENT

<?xml version="1.0" encoding="utf-8"?><dataset entity="PATIENT"> <columns> <column token="PATIENT ID"/> <column token="LAST WEIGHT"/> <column token="LAST CD4 COUNT"/> </columns> <rows> <row> <value>1</value> <value>180</value> <value>209</value> </row> <row> <value>2</value> <value>200</value> <value>198</value> </row> </rows></dataset>

SQL Flat FileXMLWeb

Service(SOAP)

Preview Data Set

Back to the Real World

Diagnosed with HIV and TB

Started on ARV Regimen

Started on TB Regimen

Started on Food Program

Joseph Jeune

Sept 2003

March 2003

We need your help … join OpenMRS!

justin@openmrs.org

Thank You

Thank you to the Eclipse and BIRT Communities!

Resources

Partners In Health – www.pih.org OpenMRS – www.openmrs.org OpenMRS IRC – irc.freenode.net #openmrs Eclipse BIRT – http://www.eclipse.org/birt BIRT Exchange – http://www.birt-exchange.com BIRT World - http://birtworld.blogspot.com BIRT Newsgroup - news://news.eclipse.org/eclipse.birt

© 2008 by Justin Miranda; made available under the EPL v1.0 | 18 March 2008 Using Eclipse BIRT in...

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